Wall clock time and date at job start Mon Mar 30 2020 02:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86799 * 119.99831 * 2 1 4 4 H 1.48498 * 109.47211 * 270.00505 * 3 2 1 5 5 H 1.48501 * 109.47057 * 30.00253 * 3 2 1 6 6 H 1.48499 * 109.46881 * 150.00320 * 3 2 1 7 7 C 1.38736 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99812 * 163.32096 * 7 2 1 9 9 N 1.36811 * 120.00263 * 343.31404 * 7 2 1 10 10 C 1.47033 * 120.57278 * 334.71975 * 9 7 2 11 11 C 1.53555 * 108.23360 * 225.19169 * 10 9 7 12 12 N 1.47054 * 108.18537 * 303.36452 * 11 10 9 13 13 C 1.40257 * 118.74199 * 44.90904 * 12 11 10 14 14 C 1.38564 * 120.23646 * 163.59368 * 13 12 11 15 15 C 1.38280 * 119.95619 * 179.79187 * 14 13 12 16 16 C 1.38802 * 120.22422 * 0.02562 * 15 14 13 17 17 O 1.35999 * 119.92087 * 180.02562 * 16 15 14 18 18 C 1.38584 * 120.15645 * 0.06395 * 16 15 14 19 19 C 1.38814 * 119.82348 * 359.96461 * 18 16 15 20 20 H 0.97000 * 120.00114 * 5.03598 * 1 2 3 21 21 H 1.09006 * 109.70936 * 344.87962 * 10 9 7 22 22 H 1.09001 * 109.71359 * 105.50618 * 10 9 7 23 23 H 1.08998 * 109.71672 * 63.03788 * 11 10 9 24 24 H 1.09003 * 109.71723 * 183.69026 * 11 10 9 25 25 H 0.97001 * 120.62881 * 224.93490 * 12 11 10 26 26 H 1.07999 * 120.02268 * 359.76720 * 14 13 12 27 27 H 1.08001 * 119.88857 * 179.97438 * 15 14 13 28 28 H 0.96698 * 113.99641 * 270.01991 * 17 16 15 29 29 H 1.08004 * 120.09265 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0100 -1.2015 -0.0005 8 1 3.0559 -1.2211 -0.2690 9 7 1.3691 -2.3615 0.3391 10 6 0.1828 -2.3340 1.2073 11 6 0.3332 -3.4402 2.2616 12 7 0.5172 -4.7200 1.5610 13 6 1.4074 -4.7743 0.4784 14 6 1.8663 -5.9961 0.0131 15 6 2.7404 -6.0432 -1.0573 16 6 3.1610 -4.8698 -1.6681 17 8 4.0204 -4.9233 -2.7207 18 6 2.7078 -3.6439 -1.2072 19 6 1.8307 -3.5917 -0.1325 20 1 -0.4850 0.8368 -0.0737 21 1 0.1100 -1.3642 1.6997 22 1 -0.7127 -2.5127 0.6120 23 1 1.2014 -3.2356 2.8880 24 1 -0.5642 -3.4845 2.8788 25 1 0.0319 -5.5115 1.8420 26 1 1.5419 -6.9111 0.4864 27 1 3.0978 -6.9960 -1.4189 28 1 4.9534 -4.8947 -2.4685 29 1 3.0360 -2.7315 -1.6829 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260472071.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:58 Heat of formation + Delta-G solvation = 5.238983 kcal Electronic energy + Delta-G solvation = -14878.023936 eV Core-core repulsion = 12380.501912 eV Total energy + Delta-G solvation = -2497.522024 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.23924 -37.23796 -34.96247 -33.96059 -31.76570 -29.17066 -28.44526 -26.41324 -23.81149 -22.58989 -21.45798 -19.37390 -17.60779 -16.94075 -16.57219 -15.45634 -15.07952 -14.47910 -13.94451 -13.66023 -13.46234 -13.13163 -12.69389 -12.26301 -11.75511 -11.57579 -11.30071 -11.12554 -10.98309 -10.67734 -10.34430 -10.08640 -9.58241 -9.24924 -8.95476 -8.47615 -7.04240 -6.39461 -6.14505 -3.69113 2.45080 2.55146 3.15276 3.19330 3.23249 4.04673 4.27139 4.64231 4.85172 5.08727 5.31209 5.74622 5.87757 6.00774 6.08384 6.17583 6.44122 6.58826 6.76511 7.02774 7.10226 7.17460 7.30775 7.38608 7.52101 7.64400 7.97803 8.14122 8.50800 8.63026 8.67082 9.31202 9.69047 10.66606 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.028297 B = 0.011221 C = 0.008400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.270542 B = 2494.668805 C = 3332.541190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.024 3.976 3 Si 0.923 3.077 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.296 4.296 8 H 0.091 0.909 9 N -0.454 5.454 10 C 0.132 3.868 11 C 0.104 3.896 12 N -0.760 5.760 13 C 0.103 3.897 14 C -0.133 4.133 15 C -0.215 4.215 16 C 0.101 3.899 17 O -0.508 6.508 18 C -0.208 4.208 19 C 0.177 3.823 20 H 0.269 0.731 21 H 0.097 0.903 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.389 0.611 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.373 0.627 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.205 -5.457 3.332 6.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.179 4.179 3 Si 0.750 3.250 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.424 4.424 8 H 0.108 0.892 9 N -0.145 5.145 10 C 0.007 3.993 11 C -0.022 4.022 12 N -0.396 5.396 13 C 0.000 4.000 14 C -0.157 4.157 15 C -0.238 4.238 16 C 0.056 3.944 17 O -0.316 6.316 18 C -0.234 4.234 19 C 0.062 3.938 20 H 0.079 0.921 21 H 0.115 0.885 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.222 0.778 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.226 0.774 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.413 -4.812 3.235 5.968 hybrid contribution 0.519 0.600 0.257 0.834 sum 1.933 -4.212 3.492 5.803 Atomic orbital electron populations 1.70016 1.05847 1.27760 1.48072 1.25329 0.95552 0.99718 0.97290 0.85966 0.79314 0.81186 0.78574 1.20297 1.20773 1.19466 1.19478 0.94451 0.83278 1.45183 0.89158 1.42426 1.26677 1.01856 1.43499 1.21759 0.88301 0.98085 0.91147 1.21991 0.99846 0.85344 0.95017 1.44268 1.49406 1.10856 1.35069 1.17306 0.98115 0.92630 0.91955 1.19929 1.01462 0.94668 0.99684 1.20394 1.06310 0.96586 1.00490 1.17982 0.95262 0.92039 0.89157 1.84807 1.18655 1.96492 1.31655 1.20451 1.07000 0.97035 0.98949 1.17480 0.98020 0.85299 0.93037 0.92116 0.88506 0.93017 0.93440 0.91159 0.77798 0.87640 0.87771 0.77378 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.42 11.14 55.49 0.62 -22.80 15 2 C 0.02 0.63 4.93 -17.45 -0.09 0.54 15 3 Si 0.92 19.99 29.59 -169.99 -5.03 14.96 15 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 7 C -0.30 -7.80 8.70 -15.15 -0.13 -7.93 15 8 H 0.09 2.35 7.05 -52.48 -0.37 1.98 15 9 N -0.45 -11.54 2.99 -112.25 -0.34 -11.87 15 10 C 0.13 3.04 5.18 -3.46 -0.02 3.02 15 11 C 0.10 1.93 7.28 -3.45 -0.03 1.91 15 12 N -0.76 -14.09 5.84 -57.68 -0.34 -14.42 15 13 C 0.10 2.19 6.53 -83.34 -0.54 1.65 15 14 C -0.13 -2.57 9.93 -39.45 -0.39 -2.96 15 15 C -0.21 -4.19 9.98 -39.36 -0.39 -4.59 15 16 C 0.10 2.13 6.70 -39.25 -0.26 1.87 15 17 O -0.51 -9.44 13.50 -19.74 -0.27 -9.71 15 18 C -0.21 -4.88 9.16 -39.24 -0.36 -5.24 15 19 C 0.18 4.29 6.33 -83.57 -0.53 3.76 15 20 H 0.27 6.79 8.32 -40.82 -0.34 6.45 15 21 H 0.10 2.33 6.35 -51.93 -0.33 2.00 15 22 H 0.05 1.27 8.14 -51.93 -0.42 0.85 15 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.39 5.96 8.90 -40.82 -0.36 5.60 15 26 H 0.11 1.72 8.06 -52.49 -0.42 1.30 15 27 H 0.10 1.80 8.06 -52.49 -0.42 1.37 15 28 H 0.37 4.97 9.06 45.56 0.41 5.38 15 29 H 0.12 2.95 6.81 -52.48 -0.36 2.59 15 LS Contribution 246.15 15.07 3.71 3.71 Total: -1.00 -29.47 246.15 -6.64 -36.11 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -2.26 Total: 12.01 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.74 Total: -7.98 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.05 Total: -49.10 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.27 Total: -9.71 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.47 -6.64 -36.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472071.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.353 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds