Wall clock time and date at job start Mon Mar 30 2020 02:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99945 * 2 1 4 4 H 1.48495 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46755 * 299.99815 * 3 2 1 6 6 H 1.48503 * 109.46981 * 59.99560 * 3 2 1 7 7 C 1.37871 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99517 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00450 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.47254 * 179.97438 * 9 7 2 11 11 N 1.31786 * 119.09109 * 269.98071 * 10 9 7 12 12 C 1.32491 * 120.95675 * 179.72700 * 11 10 9 13 13 C 1.38236 * 119.17944 * 0.56860 * 12 11 10 14 14 C 1.50699 * 120.82262 * 179.71877 * 13 12 11 15 15 C 1.53000 * 117.50321 * 59.72280 * 14 13 12 16 16 C 1.52997 * 117.50247 * 351.09380 * 14 13 12 17 17 C 1.39373 * 118.34704 * 359.44485 * 13 12 11 18 18 O 1.35523 * 120.50983 * 180.25223 * 17 13 12 19 19 N 1.31766 * 119.09060 * 89.99594 * 10 9 7 20 20 H 0.97002 * 120.00111 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46726 * 60.00287 * 9 7 2 22 22 H 1.08996 * 109.46910 * 299.99980 * 9 7 2 23 23 H 1.08002 * 120.40899 * 180.30732 * 12 11 10 24 24 H 1.09002 * 115.55636 * 205.40680 * 14 13 12 25 25 H 1.08990 * 117.49990 * 145.01584 * 15 14 13 26 26 H 1.09004 * 117.49237 * 359.97438 * 15 14 13 27 27 H 1.08999 * 117.49685 * 0.02562 * 16 14 13 28 28 H 1.08999 * 117.52022 * 214.97066 * 16 14 13 29 29 H 0.96700 * 113.99709 * 90.00088 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 2.6464 -4.1319 -1.1511 12 6 3.5110 -5.1349 -1.1942 13 6 3.9698 -5.6806 -0.0099 14 6 4.9487 -6.8264 -0.0158 15 6 6.2994 -6.5982 -0.6972 16 6 5.2493 -7.4919 -1.3602 17 6 3.5091 -5.1410 1.1897 18 8 3.9341 -5.6389 2.3763 19 7 2.6467 -4.1315 1.1520 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 3.8498 -5.5241 -2.1430 24 1 4.9324 -7.4633 0.8686 25 1 7.1717 -7.0850 -0.2612 26 1 6.4798 -5.6193 -1.1417 27 1 4.7394 -7.1007 -2.2406 28 1 5.4311 -8.5666 -1.3607 29 1 4.7293 -5.2097 2.7207 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260484378.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:32 Heat of formation + Delta-G solvation = 0.929813 kcal Electronic energy + Delta-G solvation = -14193.359805 eV Core-core repulsion = 11695.650921 eV Total energy + Delta-G solvation = -2497.708884 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.26246 -38.73716 -38.23193 -35.43471 -34.08787 -32.78141 -30.06149 -26.43103 -25.32538 -23.84007 -23.17744 -21.71949 -19.79783 -19.04379 -18.61791 -17.33362 -16.74497 -16.39746 -15.87505 -15.17450 -14.99823 -14.57561 -14.12490 -13.69987 -13.49312 -13.01330 -12.76640 -12.63725 -12.34168 -12.17268 -12.07087 -11.62162 -11.51522 -11.45329 -11.21566 -10.64772 -10.21531 -9.74651 -8.25493 -6.37832 -0.16207 0.07388 1.39479 1.40850 1.53657 2.31333 2.43048 2.65795 3.06333 3.10100 3.18437 3.46508 3.53570 3.86081 4.03771 4.18691 4.31711 4.53193 4.68351 4.82693 5.03536 5.16547 5.23123 5.27599 5.31711 5.36575 5.63746 6.00418 6.07976 6.50413 6.67413 7.22988 7.28744 8.86387 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.042207 B = 0.006662 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.242427 B = 4202.183564 C = 4293.930063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.047 0.953 9 C 0.087 3.913 10 C 0.354 3.646 11 N -0.542 5.542 12 C 0.148 3.852 13 C -0.182 4.182 14 C -0.118 4.118 15 C -0.158 4.158 16 C -0.164 4.164 17 C 0.347 3.653 18 O -0.476 6.476 19 N -0.565 5.565 20 H 0.269 0.731 21 H 0.028 0.972 22 H 0.021 0.979 23 H 0.200 0.800 24 H 0.127 0.873 25 H 0.121 0.879 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.121 0.879 29 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.541 -13.539 -1.169 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.065 0.935 9 C 0.049 3.951 10 C 0.088 3.912 11 N -0.257 5.257 12 C -0.016 4.016 13 C -0.187 4.187 14 C -0.137 4.137 15 C -0.195 4.195 16 C -0.201 4.201 17 C 0.159 3.841 18 O -0.286 6.286 19 N -0.290 5.290 20 H 0.078 0.922 21 H 0.046 0.954 22 H 0.039 0.961 23 H 0.217 0.783 24 H 0.145 0.855 25 H 0.139 0.861 26 H 0.107 0.893 27 H 0.119 0.881 28 H 0.139 0.861 29 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 12.311 -13.096 -1.157 18.011 hybrid contribution 0.781 0.591 0.375 1.048 sum 13.092 -12.505 -0.782 18.121 Atomic orbital electron populations 1.70069 1.07569 1.28278 1.50460 1.25893 0.95905 1.03066 0.94135 0.85259 0.78498 0.78152 0.78240 1.19317 1.19631 1.19825 1.21014 0.92535 0.90577 1.52212 0.93477 1.17903 0.91604 0.88390 0.97239 1.23441 0.92891 0.92809 0.82017 1.68362 1.14006 1.13002 1.30327 1.23688 0.89279 0.89148 0.99528 1.21155 1.02568 1.01943 0.93046 1.20699 0.96137 0.97115 0.99743 1.23148 0.92040 1.01644 1.02693 1.23217 1.02103 1.00358 0.94376 1.19575 0.89935 0.87878 0.86671 1.84606 1.50405 1.59513 1.34050 1.67858 1.15155 1.13224 1.32747 0.92174 0.95433 0.96108 0.78323 0.85526 0.86096 0.89295 0.88080 0.86063 0.71553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.27 13.29 21.45 0.28 -55.98 15 2 C 0.01 0.52 5.46 84.65 0.46 0.98 15 3 Si 0.97 45.03 29.54 68.60 2.03 47.06 15 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 7 C -0.52 -31.31 9.09 25.60 0.23 -31.08 15 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 15 9 C 0.09 5.03 5.41 29.10 0.16 5.18 15 10 C 0.35 17.63 6.83 138.76 0.95 18.58 15 11 N -0.54 -23.90 10.33 -188.04 -1.94 -25.84 15 12 C 0.15 4.84 10.56 84.59 0.89 5.73 15 13 C -0.18 -5.40 5.65 -19.59 -0.11 -5.51 15 14 C -0.12 -2.32 5.80 -11.54 -0.07 -2.38 15 15 C -0.16 -2.36 10.18 30.60 0.31 -2.05 15 16 C -0.16 -2.35 9.88 30.60 0.30 -2.05 15 17 C 0.35 12.46 7.81 84.82 0.66 13.12 15 18 O -0.48 -13.47 12.89 -88.26 -1.14 -14.61 15 19 N -0.57 -26.19 10.36 -300.68 -3.12 -29.30 15 20 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 21 H 0.03 1.66 8.14 -2.39 -0.02 1.64 15 22 H 0.02 1.27 8.14 -2.39 -0.02 1.25 15 23 H 0.20 4.69 6.16 -2.91 -0.02 4.67 15 24 H 0.13 2.32 7.86 -2.39 -0.02 2.30 15 25 H 0.12 1.29 8.14 -2.39 -0.02 1.27 15 26 H 0.09 1.50 8.14 -2.38 -0.02 1.48 15 27 H 0.10 1.41 6.27 -2.39 -0.01 1.40 15 28 H 0.12 1.26 8.14 -2.39 -0.02 1.24 15 29 H 0.42 7.56 9.06 -74.06 -0.67 6.89 15 Total: -1.00 -73.32 260.51 0.42 -72.90 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 0.51 Total: 5.24 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 3.79 Total: 0.54 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -4.77 Total: -111.13 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -1.14 Total: -14.61 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -73.32 0.42 -72.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484378.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.834 kcal (2) G-P(sol) polarization free energy of solvation -73.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds