Wall clock time and date at job start Mon Mar 30 2020 02:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.50702 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.31815 * 119.11335 * 89.99420 * 10 9 7 12 12 C 1.32323 * 120.76724 * 180.11737 * 11 10 9 13 13 C 1.38744 * 119.02767 * 0.02562 * 12 11 10 14 14 C 1.38027 * 118.56082 * 359.79761 * 13 12 11 15 15 N 1.31749 * 119.11745 * 269.73695 * 10 9 7 16 16 C 1.50561 * 121.32885 * 180.54584 * 14 13 12 17 17 C 1.53031 * 109.64336 * 342.76429 * 16 14 13 18 18 O 1.43192 * 108.63096 * 49.19964 * 17 16 14 19 19 C 1.42827 * 113.25248 * 289.49384 * 18 17 16 20 20 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 22 22 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 23 23 H 1.07989 * 120.48273 * 179.97438 * 12 11 10 24 24 H 1.08996 * 109.44157 * 102.81729 * 16 14 13 25 25 H 1.09002 * 109.43870 * 222.70836 * 16 14 13 26 26 H 1.09006 * 109.61009 * 168.94673 * 17 16 14 27 27 H 1.09001 * 109.61304 * 289.28220 * 17 16 14 28 28 H 1.08993 * 109.36217 * 291.30253 * 19 18 17 29 29 H 1.09001 * 109.35614 * 171.69983 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2300 -3.6447 0.0133 11 7 2.6415 -4.1291 1.1681 12 6 3.5025 -5.1329 1.2129 13 6 3.9701 -5.6723 0.0232 14 6 3.5139 -5.1415 -1.1664 15 7 2.6478 -4.1385 -1.1345 16 6 3.9708 -5.6869 -2.4933 17 6 5.2393 -6.5202 -2.2978 18 8 5.0213 -7.4397 -1.2219 19 6 4.9569 -6.8064 0.0567 20 1 -0.4851 -0.8400 -0.0004 21 1 0.6205 -2.5547 0.8933 22 1 0.6280 -2.5591 -0.8867 23 1 3.8369 -5.5259 2.1615 24 1 3.1865 -6.3140 -2.9172 25 1 4.1805 -4.8605 -3.1724 26 1 5.4591 -7.0721 -3.2118 27 1 6.0752 -5.8633 -2.0573 28 1 5.9420 -6.4207 0.3190 29 1 4.6450 -7.5347 0.8053 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260644708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:38 Heat of formation + Delta-G solvation = -36.692295 kcal Electronic energy + Delta-G solvation = -14394.144853 eV Core-core repulsion = 11894.804552 eV Total energy + Delta-G solvation = -2499.340301 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.40999 -39.50119 -36.02182 -35.35748 -33.90596 -32.14830 -30.49412 -26.80571 -25.97925 -24.93966 -24.04501 -21.67384 -19.16529 -19.06342 -17.80192 -17.32939 -16.43124 -16.07534 -15.98029 -15.64867 -15.07511 -14.88602 -14.48109 -13.96350 -13.79433 -13.59403 -13.00972 -12.80445 -12.53436 -12.40464 -11.95287 -11.87033 -11.47509 -11.11733 -10.74183 -10.64981 -10.23221 -10.00289 -8.78680 -6.50082 -0.17084 0.09304 1.49200 1.58184 1.78864 2.48158 2.67577 2.76666 2.99047 3.04920 3.21742 3.41896 3.62599 3.84148 4.04785 4.15945 4.37053 4.43625 4.48351 4.64280 4.69782 4.83286 4.86535 4.93082 5.07291 5.41518 5.72874 5.97070 6.01138 6.06674 6.41461 7.17652 7.27730 8.61794 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.046911 B = 0.006800 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.736977 B = 4116.912603 C = 4264.108013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.028 4.028 3 Si 1.123 2.877 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.600 4.600 8 H 0.036 0.964 9 C 0.074 3.926 10 C 0.337 3.663 11 N -0.548 5.548 12 C 0.149 3.851 13 C -0.247 4.247 14 C 0.157 3.843 15 N -0.546 5.546 16 C -0.105 4.105 17 C 0.066 3.934 18 O -0.384 6.384 19 C 0.121 3.879 20 H 0.257 0.743 21 H 0.018 0.982 22 H 0.016 0.984 23 H 0.210 0.790 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.137 0.863 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.101 -14.315 -1.990 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.226 4.226 3 Si 0.943 3.057 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.639 4.639 8 H 0.054 0.946 9 C 0.035 3.965 10 C 0.071 3.929 11 N -0.262 5.262 12 C -0.017 4.017 13 C -0.251 4.251 14 C 0.012 3.988 15 N -0.261 5.261 16 C -0.142 4.142 17 C -0.011 4.011 18 O -0.302 6.302 19 C 0.043 3.957 20 H 0.067 0.933 21 H 0.037 0.963 22 H 0.034 0.966 23 H 0.227 0.773 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.155 0.845 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.212 -12.151 -2.039 17.347 hybrid contribution 0.060 -1.803 0.115 1.807 sum 12.272 -13.954 -1.924 18.682 Atomic orbital electron populations 1.70903 1.07643 1.29962 1.47707 1.27499 0.96552 1.06398 0.92132 0.82880 0.74154 0.70782 0.77929 1.19557 1.19899 1.19504 1.21872 0.93601 0.91789 1.56612 0.94593 1.17995 0.92376 0.89969 0.96176 1.23331 0.93158 0.92915 0.83502 1.68322 1.14554 1.12988 1.30341 1.23863 0.89007 0.88927 0.99895 1.22170 1.04524 1.03683 0.94752 1.21961 0.89915 0.89246 0.97674 1.68262 1.14125 1.12526 1.31144 1.21238 1.00730 1.01004 0.91266 1.22823 0.93962 0.92313 0.91966 1.88057 1.93174 1.33498 1.15491 1.21428 0.95864 0.91607 0.86784 0.93341 0.96346 0.96590 0.77298 0.88099 0.88172 0.84489 0.91403 0.88983 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.47 13.65 21.45 0.29 -58.18 15 2 C -0.03 -1.65 5.46 84.66 0.46 -1.19 15 3 Si 1.12 51.73 29.90 68.60 2.05 53.78 15 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 7 C -0.60 -36.71 9.09 25.60 0.23 -36.48 15 8 H 0.04 2.22 7.74 -2.91 -0.02 2.19 15 9 C 0.07 4.26 4.72 29.10 0.14 4.40 15 10 C 0.34 17.05 6.83 138.76 0.95 18.00 15 11 N -0.55 -24.62 10.34 -187.76 -1.94 -26.56 15 12 C 0.15 4.81 10.99 84.74 0.93 5.74 15 13 C -0.25 -7.22 5.80 -19.90 -0.12 -7.33 15 14 C 0.16 5.53 6.68 42.36 0.28 5.81 15 15 N -0.55 -25.20 10.26 -176.46 -1.81 -27.01 15 16 C -0.10 -2.61 6.27 29.81 0.19 -2.43 15 17 C 0.07 1.16 6.84 71.99 0.49 1.65 15 18 O -0.38 -7.82 10.80 -148.98 -1.61 -9.43 15 19 C 0.12 2.24 6.72 71.13 0.48 2.72 15 20 H 0.26 16.45 7.22 -92.71 -0.67 15.78 15 21 H 0.02 1.11 8.00 -2.39 -0.02 1.09 15 22 H 0.02 0.97 8.01 -2.39 -0.02 0.95 15 23 H 0.21 4.42 8.06 -2.92 -0.02 4.39 15 24 H 0.10 2.40 8.14 -2.39 -0.02 2.38 15 25 H 0.10 2.47 8.14 -2.39 -0.02 2.45 15 26 H 0.14 1.53 8.14 -2.38 -0.02 1.52 15 27 H 0.07 1.08 8.08 -2.39 -0.02 1.06 15 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 15 29 H 0.13 1.79 8.14 -2.39 -0.02 1.77 15 Total: -1.00 -77.29 253.51 2.27 -75.02 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 1.25 Total: 1.47 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 4.04 Total: -9.11 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -3.46 Total: -111.74 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -1.61 Total: -9.43 kcal Atomic # 14 Polarization: 51.73 SS G_CDS: 2.05 Total: 53.78 kcal Total: -77.29 2.27 -75.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260644708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.331 kcal (2) G-P(sol) polarization free energy of solvation -77.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds