Wall clock time and date at job start Mon Mar 30 2020 02:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31904 * 120.38998 * 2 1 4 4 C 1.33442 * 120.59312 * 179.97438 * 3 2 1 5 5 C 1.41596 * 119.26529 * 180.10782 * 4 3 2 6 6 H 1.08002 * 120.00223 * 180.02562 * 5 4 3 7 7 C 1.40059 * 120.00206 * 359.97438 * 5 4 3 8 8 N 1.30694 * 119.99957 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00241 * 180.27445 * 7 5 4 10 10 H 1.48497 * 109.47322 * 179.72817 * 9 7 5 11 11 H 1.48498 * 109.47165 * 299.72764 * 9 7 5 12 12 H 1.48501 * 109.47099 * 59.72589 * 9 7 5 13 13 N 1.33402 * 121.46705 * 0.38580 * 4 3 2 14 14 C 1.32153 * 120.71737 * 359.45882 * 13 4 3 15 15 C 1.38609 * 119.11758 * 0.39220 * 14 13 4 16 16 C 1.50504 * 121.47564 * 180.02562 * 15 14 13 17 17 C 1.53054 * 109.63843 * 343.16653 * 16 15 14 18 18 O 1.43187 * 108.58739 * 49.03441 * 17 16 15 19 19 C 1.42794 * 113.29291 * 289.22430 * 18 17 16 20 20 H 1.09003 * 109.46851 * 89.99724 * 1 2 3 21 21 H 1.08994 * 109.47388 * 210.00473 * 1 2 3 22 22 H 1.09006 * 109.47152 * 330.00644 * 1 2 3 23 23 H 0.97005 * 120.00041 * 179.97438 * 8 7 5 24 24 H 1.08996 * 109.44079 * 103.22046 * 16 15 14 25 25 H 1.08999 * 109.43937 * 223.14641 * 16 15 14 26 26 H 1.08992 * 109.61705 * 168.77169 * 17 16 15 27 27 H 1.09006 * 109.61379 * 289.12981 * 17 16 15 28 28 H 1.09001 * 109.36393 * 172.01374 * 19 18 17 29 29 H 1.08998 * 109.36734 * 291.62390 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1743 1.1378 0.0000 4 6 3.5087 1.1425 0.0005 5 6 4.1965 2.3802 0.0028 6 1 5.2764 2.3979 0.0028 7 6 3.4765 3.5816 0.0040 8 7 2.1697 3.5602 0.0035 9 14 4.3839 5.2144 -0.0007 10 1 3.4006 6.3272 -0.0052 11 1 5.2353 5.3111 1.2122 12 1 5.2373 5.3030 -1.2128 13 7 4.2091 0.0072 -0.0066 14 6 3.5966 -1.1638 -0.0037 15 6 2.2110 -1.2003 -0.0014 16 6 1.4592 -2.5041 0.0025 17 6 2.3969 -3.6398 -0.4141 18 8 3.6016 -3.5419 0.3536 19 6 4.4152 -2.4269 -0.0123 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3634 0.8901 0.5138 23 1 1.6711 4.3923 0.0047 24 1 1.0760 -2.6989 1.0041 25 1 0.6272 -2.4452 -0.6992 26 1 1.9173 -4.5994 -0.2218 27 1 2.6282 -3.5525 -1.4758 28 1 5.2363 -2.3301 0.6980 29 1 4.8209 -2.5877 -1.0111 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260729878.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:28 Heat of formation + Delta-G solvation = -32.203548 kcal Electronic energy + Delta-G solvation = -14791.771635 eV Core-core repulsion = 12292.625981 eV Total energy + Delta-G solvation = -2499.145654 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.46342 -39.08936 -35.86967 -35.08956 -33.43028 -31.55115 -29.31436 -28.52586 -26.51607 -24.56691 -22.28270 -21.70843 -19.35722 -18.38074 -17.27105 -16.87472 -16.74444 -15.81648 -15.50123 -15.05944 -14.79248 -14.20603 -13.90365 -13.63949 -13.55548 -13.18719 -12.99921 -12.86198 -12.62138 -12.57889 -12.00615 -11.87882 -11.19377 -10.91224 -10.82446 -10.57248 -9.60716 -9.26889 -8.43520 -6.73878 0.66803 0.90597 1.37994 1.50439 1.51969 2.18726 2.69548 2.92057 3.56830 3.75382 3.90738 4.09114 4.18084 4.27313 4.40438 4.47511 4.65479 4.75606 4.79513 4.84083 4.93418 5.04813 5.10695 5.15409 5.29880 5.50407 5.83341 6.07511 6.16664 6.53288 6.62313 7.15844 8.20127 8.36049 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.045561 B = 0.008824 C = 0.007483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.417575 B = 3172.382563 C = 3741.016521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.156 3.844 3 N -0.537 5.537 4 C 0.362 3.638 5 C -0.443 4.443 6 H 0.087 0.913 7 C 0.025 3.975 8 N -0.747 5.747 9 Si 1.000 3.000 10 H -0.261 1.261 11 H -0.259 1.259 12 H -0.258 1.258 13 N -0.621 5.621 14 C 0.132 3.868 15 C -0.330 4.330 16 C -0.073 4.073 17 C 0.057 3.943 18 O -0.385 6.385 19 C 0.127 3.873 20 H 0.082 0.918 21 H 0.094 0.906 22 H 0.059 0.941 23 H 0.284 0.716 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.130 0.870 27 H 0.055 0.945 28 H 0.109 0.891 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.965 -6.938 -1.333 7.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.002 3.998 3 N -0.255 5.255 4 C 0.123 3.877 5 C -0.478 4.478 6 H 0.105 0.895 7 C -0.198 4.198 8 N -0.370 5.370 9 Si 0.819 3.181 10 H -0.185 1.185 11 H -0.183 1.183 12 H -0.182 1.182 13 N -0.343 5.343 14 C -0.019 4.019 15 C -0.339 4.339 16 C -0.111 4.111 17 C -0.019 4.019 18 O -0.303 6.303 19 C 0.049 3.951 20 H 0.100 0.900 21 H 0.112 0.888 22 H 0.078 0.922 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.148 0.852 27 H 0.074 0.926 28 H 0.127 0.873 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.618 -6.023 -1.196 6.676 hybrid contribution -0.082 0.349 -0.149 0.388 sum -2.700 -5.675 -1.346 6.427 Atomic orbital electron populations 1.20584 0.87495 1.02963 1.02944 1.22334 0.98463 0.88870 0.90091 1.69235 1.08796 1.27549 1.19926 1.20346 0.86413 0.91723 0.89201 1.19636 0.94822 0.88823 1.44545 0.89493 1.27046 0.95772 1.04693 0.92317 1.70202 1.08305 1.30263 1.28193 0.85003 0.78540 0.74391 0.80150 1.18458 1.18314 1.18245 1.68514 1.41439 0.98603 1.25771 1.22142 0.92686 0.95020 0.92024 1.20621 0.94708 0.97528 1.21042 1.20648 0.97929 0.90370 1.02170 1.22864 0.84479 0.99630 0.94920 1.87986 1.34547 1.45313 1.62484 1.21049 0.91526 0.80598 1.01917 0.89990 0.88784 0.92215 0.90524 0.91189 0.89181 0.85229 0.92622 0.87281 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.04 9.51 71.24 0.68 -2.36 15 2 C 0.16 7.60 6.83 42.77 0.29 7.89 15 3 N -0.54 -31.04 7.82 -181.98 -1.42 -32.46 15 4 C 0.36 21.77 7.36 135.17 1.00 22.76 15 5 C -0.44 -25.71 9.38 23.54 0.22 -25.49 15 6 H 0.09 4.88 7.85 -2.91 -0.02 4.85 15 7 C 0.02 1.30 5.50 85.30 0.47 1.77 15 8 N -0.75 -40.51 11.42 21.84 0.25 -40.26 15 9 Si 1.00 38.74 29.56 68.60 2.03 40.77 15 10 H -0.26 -9.31 7.11 99.48 0.71 -8.60 15 11 H -0.26 -9.75 7.11 99.48 0.71 -9.05 15 12 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 13 N -0.62 -34.85 10.27 -182.43 -1.87 -36.73 15 14 C 0.13 6.31 6.72 42.54 0.29 6.59 15 15 C -0.33 -14.70 5.81 -19.62 -0.11 -14.82 15 16 C -0.07 -2.30 4.87 29.80 0.15 -2.15 15 17 C 0.06 1.56 6.84 72.00 0.49 2.05 15 18 O -0.39 -12.99 10.79 -148.98 -1.61 -14.60 15 19 C 0.13 4.75 6.93 71.18 0.49 5.24 15 20 H 0.08 2.71 8.14 -2.39 -0.02 2.69 15 21 H 0.09 2.76 6.97 -2.39 -0.02 2.75 15 22 H 0.06 2.31 8.14 -2.38 -0.02 2.29 15 23 H 0.28 13.71 8.29 -92.70 -0.77 12.94 15 24 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 25 H 0.09 2.40 7.47 -2.39 -0.02 2.39 15 26 H 0.13 2.52 8.14 -2.39 -0.02 2.51 15 27 H 0.06 1.46 8.08 -2.38 -0.02 1.44 15 28 H 0.11 3.96 8.14 -2.39 -0.02 3.94 15 29 H 0.08 2.67 8.14 -2.39 -0.02 2.65 15 Total: -1.00 -70.39 248.43 2.49 -67.90 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 1.16 Total: 13.90 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 3.96 Total: 1.49 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.05 Total: -109.45 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -1.61 Total: -14.60 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -70.39 2.49 -67.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260729878.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.694 kcal (2) G-P(sol) polarization free energy of solvation -70.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds