Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32016 * 118.92970 * 2 1 4 4 C 1.32578 * 121.28903 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.05976 * 0.02562 * 4 3 2 6 6 C 1.40815 * 118.42705 * 0.02562 * 5 4 3 7 7 C 1.41553 * 120.70533 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99777 * 359.97438 * 7 6 5 9 9 C 1.40109 * 119.99792 * 180.02562 * 7 6 5 10 10 N 1.30671 * 120.00283 * 359.97438 * 9 7 6 11 11 Si 1.86809 * 119.99929 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47037 * 59.99265 * 11 9 7 13 13 H 1.48497 * 109.46920 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46502 * 299.99503 * 11 9 7 15 15 N 1.31379 * 118.92881 * 179.97438 * 2 1 3 16 16 C 1.51017 * 109.97377 * 179.76266 * 5 4 3 17 17 H 1.09007 * 110.30918 * 224.36912 * 16 5 4 18 18 O 1.42895 * 110.31366 * 102.19392 * 16 5 4 19 19 C 1.54258 * 105.20622 * 343.35627 * 16 5 4 20 20 C 1.51199 * 131.24193 * 180.02562 * 4 3 2 21 21 H 1.08993 * 109.47419 * 270.01687 * 1 2 3 22 22 H 1.08998 * 109.46885 * 30.02290 * 1 2 3 23 23 H 1.09003 * 109.46900 * 150.01788 * 1 2 3 24 24 H 0.96994 * 120.00109 * 180.02562 * 10 9 7 25 25 H 0.96698 * 114.00279 * 179.97438 * 18 16 5 26 26 H 1.08997 * 110.60284 * 267.55274 * 19 16 5 27 27 H 1.08999 * 111.12581 * 144.14471 * 19 16 5 28 28 H 1.09004 * 110.29388 * 315.94466 * 20 4 3 29 29 H 1.08999 * 110.29882 * 78.08156 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1457 1.1554 0.0000 4 6 3.4703 1.2100 0.0005 5 6 4.1905 0.0311 0.0005 6 6 3.4831 -1.1865 -0.0006 7 6 4.1724 -2.4229 -0.0012 8 1 5.2523 -2.4390 -0.0012 9 6 3.4537 -3.6256 -0.0028 10 7 2.1472 -3.6060 -0.0033 11 14 4.3634 -5.2572 -0.0029 12 1 5.2146 -5.3494 1.2104 13 1 3.3815 -6.3713 -0.0041 14 1 5.2171 -5.3478 -1.2146 15 7 2.1426 -1.1499 0.0005 16 6 5.6706 0.3308 -0.0048 17 1 6.1842 -0.3118 -0.7200 18 8 6.2171 0.1543 1.3037 19 6 5.7828 1.8081 -0.4343 20 6 4.4194 2.3870 0.0011 21 1 -0.3634 0.0003 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5136 24 1 1.6496 -4.4386 -0.0041 25 1 7.1658 0.3326 1.3611 26 1 5.9089 1.8850 -1.5142 27 1 6.6000 2.3075 0.0861 28 1 4.0851 3.1427 -0.7097 29 1 4.4921 2.8136 1.0015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058534.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = -38.960510 kcal Electronic energy + Delta-G solvation = -14856.070545 eV Core-core repulsion = 12356.631887 eV Total energy + Delta-G solvation = -2499.438658 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.40459 -38.53221 -36.13675 -35.36400 -33.25394 -31.78847 -29.31737 -28.11184 -27.03299 -23.63304 -21.99148 -21.53533 -19.38968 -18.00744 -17.94317 -16.84138 -16.26176 -15.66258 -15.42600 -15.12010 -14.29729 -14.12256 -13.64969 -13.32025 -13.23797 -13.18288 -12.86606 -12.75735 -12.61927 -12.51701 -11.98395 -11.94215 -11.44874 -10.81987 -10.74105 -10.43447 -9.65320 -9.37557 -8.38705 -6.77857 0.66602 0.98949 1.36729 1.50651 1.54773 2.17237 2.77741 3.29939 3.56377 3.76400 3.92583 3.96607 4.09082 4.30886 4.56657 4.71141 4.74714 4.79032 4.86565 4.93925 5.04681 5.08796 5.21248 5.26796 5.36630 5.49461 6.00227 6.06032 6.55029 6.78313 7.08126 7.16813 8.17307 8.32878 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.024867 B = 0.012729 C = 0.008735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.736270 B = 2199.171332 C = 3204.762798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.286 3.714 3 N -0.632 5.632 4 C 0.145 3.855 5 C -0.340 4.340 6 C 0.252 3.748 7 C -0.438 4.438 8 H 0.091 0.909 9 C 0.021 3.979 10 N -0.743 5.743 11 Si 0.993 3.007 12 H -0.259 1.259 13 H -0.263 1.263 14 H -0.254 1.254 15 N -0.547 5.547 16 C 0.174 3.826 17 H 0.051 0.949 18 O -0.579 6.579 19 C -0.130 4.130 20 C -0.055 4.055 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.072 0.928 24 H 0.285 0.715 25 H 0.387 0.613 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.196 3.825 -1.212 7.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.016 3.984 3 N -0.356 5.356 4 C 0.005 3.995 5 C -0.348 4.348 6 C 0.124 3.876 7 C -0.472 4.472 8 H 0.109 0.891 9 C -0.203 4.203 10 N -0.365 5.365 11 Si 0.812 3.188 12 H -0.184 1.184 13 H -0.187 1.187 14 H -0.178 1.178 15 N -0.268 5.268 16 C 0.115 3.885 17 H 0.069 0.931 18 O -0.387 6.387 19 C -0.168 4.168 20 C -0.093 4.093 21 H 0.095 0.905 22 H 0.104 0.896 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.236 0.764 26 H 0.108 0.892 27 H 0.133 0.867 28 H 0.108 0.892 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.392 3.537 -1.084 5.742 hybrid contribution 1.364 -0.652 -0.013 1.511 sum 5.756 2.885 -1.097 6.531 Atomic orbital electron populations 1.20283 0.85653 1.02855 1.02870 1.23740 0.98928 0.84586 0.91165 1.67386 1.09568 1.30561 1.28105 1.22306 0.90167 0.96537 0.90483 1.21817 0.97200 0.95552 1.20253 1.18914 0.88315 0.93061 0.87265 1.19988 0.94858 0.89910 1.42406 0.89096 1.27176 0.95732 1.05085 0.92274 1.70159 1.08563 1.30410 1.27371 0.85104 0.78709 0.74683 0.80283 1.18367 1.18724 1.17751 1.69317 1.08913 1.26833 1.21734 1.20482 0.89006 0.95279 0.83726 0.93099 1.86660 1.28514 1.92706 1.30851 1.22930 0.96943 0.94360 1.02594 1.20896 0.91969 0.93682 1.02786 0.90457 0.89645 0.90914 0.90421 0.76422 0.89235 0.86693 0.89185 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.44 10.31 71.24 0.73 -1.71 15 2 C 0.29 15.37 7.64 138.81 1.06 16.43 15 3 N -0.63 -32.96 10.32 -175.84 -1.81 -34.78 15 4 C 0.15 7.10 7.38 42.58 0.31 7.41 15 5 C -0.34 -17.60 5.77 -19.16 -0.11 -17.71 15 6 C 0.25 14.82 6.58 40.24 0.26 15.09 15 7 C -0.44 -24.51 9.09 23.54 0.21 -24.30 15 8 H 0.09 4.78 7.61 -2.91 -0.02 4.76 15 9 C 0.02 1.09 5.50 85.32 0.47 1.56 15 10 N -0.74 -40.42 11.53 21.85 0.25 -40.17 15 11 Si 0.99 37.99 29.56 68.60 2.03 40.02 15 12 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 13 H -0.26 -9.43 7.11 99.48 0.71 -8.72 15 14 H -0.25 -9.21 7.11 99.48 0.71 -8.51 15 15 N -0.55 -32.46 7.95 -181.44 -1.44 -33.90 15 16 C 0.17 6.89 3.82 30.37 0.12 7.00 15 17 H 0.05 1.97 8.14 -2.38 -0.02 1.95 15 18 O -0.58 -22.00 13.35 -148.98 -1.99 -23.99 15 19 C -0.13 -3.80 6.80 31.49 0.21 -3.59 15 20 C -0.06 -1.95 6.77 30.48 0.21 -1.74 15 21 H 0.08 2.99 8.14 -2.39 -0.02 2.97 15 22 H 0.08 3.13 8.14 -2.39 -0.02 3.11 15 23 H 0.07 3.01 8.14 -2.39 -0.02 2.99 15 24 H 0.28 13.83 8.29 -92.71 -0.77 13.06 15 25 H 0.39 9.39 9.12 -74.06 -0.68 8.71 15 26 H 0.09 2.32 8.14 -2.39 -0.02 2.30 15 27 H 0.11 2.43 8.11 -2.39 -0.02 2.41 15 28 H 0.09 2.79 8.14 -2.39 -0.02 2.77 15 29 H 0.09 2.87 8.14 -2.39 -0.02 2.85 15 Total: -1.00 -73.73 253.79 1.02 -72.71 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.50 Total: 21.67 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 3.48 Total: -1.56 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -3.01 Total: -108.85 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -1.99 Total: -23.99 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -73.73 1.02 -72.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058534.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.752 kcal (2) G-P(sol) polarization free energy of solvation -73.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds