Wall clock time and date at job start Mon Mar 30 2020 03:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32017 * 118.93315 * 2 1 4 4 C 1.32579 * 121.28751 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.06860 * 0.02562 * 4 3 2 6 6 C 1.40813 * 118.41696 * 359.97438 * 5 4 3 7 7 C 1.41557 * 120.69937 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00330 * 9.06273 * 7 6 5 9 9 C 1.40120 * 119.99622 * 189.06172 * 7 6 5 10 10 N 1.30670 * 119.99776 * 195.39367 * 9 7 6 11 11 Si 1.86802 * 120.00193 * 15.38963 * 9 7 6 12 12 H 1.48504 * 109.46974 * 270.00335 * 11 9 7 13 13 H 1.48502 * 109.46971 * 29.99982 * 11 9 7 14 14 H 1.48497 * 109.47199 * 150.00107 * 11 9 7 15 15 N 1.31386 * 118.93095 * 180.31993 * 2 1 3 16 16 C 1.51011 * 109.97187 * 179.97438 * 5 4 3 17 17 H 1.08993 * 110.31386 * 101.91692 * 16 5 4 18 18 O 1.42904 * 110.30474 * 224.08324 * 16 5 4 19 19 C 1.54432 * 105.12681 * 342.99746 * 16 5 4 20 20 C 1.51206 * 131.23004 * 180.02562 * 4 3 2 21 21 H 1.09003 * 109.47114 * 89.99694 * 1 2 3 22 22 H 1.08999 * 109.47061 * 209.99897 * 1 2 3 23 23 H 1.09001 * 109.47036 * 329.99841 * 1 2 3 24 24 H 0.97003 * 120.00091 * 354.79916 * 10 9 7 25 25 H 0.96706 * 113.99597 * 179.97438 * 18 16 5 26 26 H 1.09000 * 110.81520 * 267.83878 * 19 16 5 27 27 H 1.08997 * 110.98791 * 144.37797 * 19 16 5 28 28 H 1.09002 * 110.30103 * 315.97361 * 20 4 3 29 29 H 1.09003 * 110.29189 * 78.11719 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1457 1.1554 0.0000 4 6 3.4703 1.2099 -0.0005 5 6 4.1906 0.0310 -0.0016 6 6 3.4831 -1.1865 -0.0015 7 6 4.1724 -2.4229 -0.0021 8 1 5.2422 -2.4449 0.1448 9 6 3.4668 -3.6183 -0.1932 10 7 4.0272 -4.7618 0.0998 11 14 1.7248 -3.5772 -0.8666 12 1 0.7612 -3.4783 0.2589 13 1 1.5666 -2.4005 -1.7585 14 1 1.4620 -4.8201 -1.6356 15 7 2.1426 -1.1499 -0.0064 16 6 5.6706 0.3308 -0.0026 17 1 6.0842 0.1986 0.9971 18 8 6.3470 -0.5139 -0.9359 19 6 5.7822 1.8083 -0.4380 20 6 4.4194 2.3870 -0.0001 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 4.9562 -4.7895 0.3777 25 1 7.3017 -0.3659 -0.9802 26 1 5.9068 1.8854 -1.5181 27 1 6.6002 2.3076 0.0813 28 1 4.0842 3.1432 -0.7100 29 1 4.4931 2.8128 1.0006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058535.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:29 Heat of formation + Delta-G solvation = -54.256405 kcal Electronic energy + Delta-G solvation = -14984.219579 eV Core-core repulsion = 12484.117641 eV Total energy + Delta-G solvation = -2500.101938 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.68991 -38.63664 -36.41888 -35.66160 -33.78166 -32.01253 -29.32597 -28.13757 -27.00416 -23.41737 -22.28526 -21.57354 -20.33594 -18.57072 -18.05841 -16.62088 -15.93623 -15.89951 -15.63245 -15.00306 -14.77100 -14.58481 -13.98502 -13.58917 -13.43676 -13.26602 -12.99653 -12.79225 -12.74622 -12.13512 -12.05742 -11.87296 -11.28970 -10.98110 -10.88318 -10.69950 -9.76412 -9.73520 -9.22302 -6.97388 0.45671 0.66385 1.50707 1.65888 1.93271 2.37116 2.57690 3.14337 3.38538 3.59822 3.63106 3.88147 3.93313 4.20612 4.40013 4.53629 4.63462 4.73788 4.82011 4.85058 4.96147 5.02038 5.17966 5.22990 5.28487 5.36159 5.70078 5.95348 6.22550 6.53323 6.74591 7.07575 7.74650 7.85273 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.025817 B = 0.014803 C = 0.009813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.292281 B = 1891.018815 C = 2852.554719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.320 3.680 3 N -0.614 5.614 4 C 0.155 3.845 5 C -0.329 4.329 6 C 0.260 3.740 7 C -0.471 4.471 8 H 0.076 0.924 9 C 0.021 3.979 10 N -0.809 5.809 11 Si 1.172 2.828 12 H -0.275 1.275 13 H -0.292 1.292 14 H -0.315 1.315 15 N -0.621 5.621 16 C 0.170 3.830 17 H 0.055 0.945 18 O -0.575 6.575 19 C -0.131 4.131 20 C -0.056 4.056 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.285 0.715 25 H 0.384 0.616 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.094 0.906 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 10.529 -0.227 10.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.051 3.949 3 N -0.337 5.337 4 C 0.017 3.983 5 C -0.336 4.336 6 C 0.134 3.866 7 C -0.505 4.505 8 H 0.094 0.906 9 C -0.199 4.199 10 N -0.431 5.431 11 Si 1.001 2.999 12 H -0.201 1.201 13 H -0.220 1.220 14 H -0.246 1.246 15 N -0.347 5.347 16 C 0.111 3.889 17 H 0.073 0.927 18 O -0.382 6.382 19 C -0.168 4.168 20 C -0.094 4.094 21 H 0.108 0.892 22 H 0.098 0.902 23 H 0.116 0.884 24 H 0.096 0.904 25 H 0.233 0.767 26 H 0.099 0.901 27 H 0.136 0.864 28 H 0.113 0.887 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.155 9.312 -0.615 9.404 hybrid contribution 3.154 0.604 0.651 3.277 sum 1.999 9.916 0.037 10.116 Atomic orbital electron populations 1.20557 0.84654 1.04093 1.04048 1.23456 0.98764 0.83655 0.89047 1.67504 1.09295 1.29344 1.27603 1.22315 0.90107 0.96269 0.89652 1.21741 0.97543 0.95104 1.19237 1.18614 0.87764 0.93563 0.86662 1.20798 0.96417 0.91433 1.41849 0.90573 1.28501 1.10234 0.90762 0.90400 1.70600 1.15177 1.28651 1.28711 0.81799 0.69356 0.71818 0.76885 1.20088 1.21962 1.24615 1.67526 1.09221 1.29629 1.28361 1.20736 0.87396 0.89624 0.91182 0.92737 1.86758 1.24900 1.63294 1.63233 1.23024 0.97452 0.93668 1.02703 1.20953 0.91044 0.93497 1.03900 0.89228 0.90195 0.88427 0.90434 0.76745 0.90113 0.86399 0.88718 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.65 10.31 71.24 0.73 -1.91 15 2 C 0.32 15.09 7.64 138.80 1.06 16.15 15 3 N -0.61 -28.23 10.32 -175.84 -1.81 -30.04 15 4 C 0.15 6.75 7.38 42.58 0.31 7.07 15 5 C -0.33 -15.91 5.82 -19.16 -0.11 -16.02 15 6 C 0.26 14.45 6.29 40.25 0.25 14.70 15 7 C -0.47 -27.16 9.12 23.55 0.21 -26.94 15 8 H 0.08 4.50 7.09 -2.91 -0.02 4.48 15 9 C 0.02 1.17 5.52 85.32 0.47 1.64 15 10 N -0.81 -45.18 13.64 21.85 0.30 -44.89 15 11 Si 1.17 58.13 25.99 68.60 1.78 59.91 15 12 H -0.27 -13.10 7.11 99.48 0.71 -12.39 15 13 H -0.29 -14.92 6.51 99.48 0.65 -14.28 15 14 H -0.31 -14.86 7.11 99.48 0.71 -14.15 15 15 N -0.62 -33.10 5.11 -181.44 -0.93 -34.03 15 16 C 0.17 6.41 4.00 30.43 0.12 6.53 15 17 H 0.05 1.97 8.14 -2.39 -0.02 1.95 15 18 O -0.57 -22.41 12.13 -148.98 -1.81 -24.22 15 19 C -0.13 -3.49 6.81 31.56 0.21 -3.27 15 20 C -0.06 -1.68 6.77 30.49 0.21 -1.48 15 21 H 0.09 2.83 8.14 -2.39 -0.02 2.81 15 22 H 0.08 2.70 8.14 -2.39 -0.02 2.68 15 23 H 0.10 2.91 8.14 -2.39 -0.02 2.89 15 24 H 0.28 15.38 8.73 -92.71 -0.81 14.57 15 25 H 0.38 9.97 9.12 -74.05 -0.68 9.29 15 26 H 0.08 2.14 8.11 -2.39 -0.02 2.12 15 27 H 0.12 2.13 8.14 -2.39 -0.02 2.11 15 28 H 0.09 2.52 8.14 -2.39 -0.02 2.50 15 29 H 0.11 2.67 8.14 -2.39 -0.02 2.65 15 Total: -1.00 -70.96 247.59 1.41 -69.54 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.40 Total: 7.25 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 3.48 Total: -3.53 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -2.44 Total: -108.95 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -1.81 Total: -24.22 kcal Atomic # 14 Polarization: 58.13 SS G_CDS: 1.78 Total: 59.91 kcal Total: -70.96 1.41 -69.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058535.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.288 kcal (2) G-P(sol) polarization free energy of solvation -70.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds