Wall clock time and date at job start Mon Mar 30 2020 03:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28739 * 124.01756 * 2 1 4 4 C 1.33351 * 110.97863 * 179.89893 * 3 2 1 5 5 C 1.40967 * 127.39804 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99552 * 186.03947 * 5 4 3 7 7 C 1.40084 * 120.00209 * 6.03220 * 5 4 3 8 8 N 1.30750 * 120.00028 * 184.16599 * 7 5 4 9 9 Si 1.86805 * 119.99799 * 4.16878 * 7 5 4 10 10 H 1.48496 * 109.46840 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47191 * 299.99961 * 9 7 5 12 12 H 1.48503 * 109.47137 * 59.99986 * 9 7 5 13 13 C 1.45899 * 105.20273 * 0.24075 * 4 3 2 14 14 C 1.33334 * 124.02221 * 179.97438 * 2 1 3 15 15 C 1.50538 * 130.57308 * 0.31287 * 14 2 1 16 16 C 1.53198 * 109.19673 * 159.53462 * 15 14 2 17 17 C 1.53201 * 110.82583 * 52.51715 * 16 15 14 18 18 C 1.46125 * 132.63844 * 180.76458 * 13 4 3 19 19 O 1.21364 * 122.44988 * 347.89414 * 18 13 4 20 20 H 1.08997 * 109.47122 * 90.02969 * 1 2 3 21 21 H 1.09005 * 109.46707 * 210.02878 * 1 2 3 22 22 H 1.08998 * 109.47204 * 330.02772 * 1 2 3 23 23 H 0.97000 * 120.00391 * 354.83893 * 8 7 5 24 24 H 1.08995 * 109.51570 * 279.45471 * 15 14 2 25 25 H 1.09001 * 109.51280 * 39.56601 * 15 14 2 26 26 H 1.08993 * 109.20663 * 172.86859 * 16 15 14 27 27 H 1.09004 * 109.20881 * 292.22149 * 16 15 14 28 28 H 1.08994 * 109.67764 * 55.14685 * 17 16 15 29 29 H 1.09003 * 109.67322 * 175.65264 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1852 1.0671 0.0000 4 6 3.4844 0.7662 0.0022 5 6 4.5711 1.6641 0.0024 6 1 5.5799 1.2908 -0.0941 7 6 4.3425 3.0405 0.1276 8 7 5.3422 3.8793 0.0461 9 14 2.6095 3.6774 0.4111 10 1 2.6365 5.1589 0.5087 11 1 1.7412 3.2713 -0.7230 12 1 2.0733 3.1084 1.6736 13 6 3.5395 -0.6917 -0.0022 14 6 2.2110 -1.1051 0.0005 15 6 1.8112 -2.5564 -0.0051 16 6 2.9864 -3.4008 -0.5078 17 6 4.2603 -3.0870 0.2833 18 6 4.6509 -1.6403 0.0119 19 8 5.7995 -1.3005 -0.1836 20 1 -0.3633 -0.0005 -1.0276 21 1 -0.3633 -0.8898 0.5143 22 1 -0.3633 0.8902 0.5134 23 1 6.2503 3.5461 -0.0259 24 1 1.5472 -2.8652 1.0063 25 1 0.9539 -2.6953 -0.6638 26 1 2.7440 -4.4572 -0.3930 27 1 3.1579 -3.1849 -1.5625 28 1 4.0737 -3.2231 1.3485 29 1 5.0636 -3.7508 -0.0364 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261076632.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:06 Heat of formation + Delta-G solvation = 10.494558 kcal Electronic energy + Delta-G solvation = -14949.299132 eV Core-core repulsion = 12452.005007 eV Total energy + Delta-G solvation = -2497.294125 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.05210 -37.88536 -35.15593 -33.81730 -32.04188 -29.26393 -27.76481 -27.60863 -24.15210 -22.15762 -21.31947 -19.47729 -17.98907 -17.20724 -16.05641 -15.43004 -14.75039 -14.19738 -13.85381 -13.66428 -13.48176 -13.41507 -12.63979 -12.47841 -12.25898 -11.95410 -11.76682 -11.12299 -10.86117 -10.76556 -10.58163 -10.39982 -9.50944 -9.16319 -8.82963 -8.26779 -7.97459 -7.58909 -7.08756 -4.48204 2.23233 3.30562 3.36072 3.64077 3.71958 4.02770 4.22640 4.43339 4.81648 4.99559 5.12416 5.18223 5.23489 5.43236 5.51630 5.63024 5.68592 5.73789 5.84735 5.88234 6.06350 6.29962 6.47863 6.71934 6.97223 7.23184 7.77606 7.93366 8.42661 8.57177 8.78123 8.96553 9.64958 10.25912 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.030197 B = 0.012894 C = 0.009199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.025336 B = 2170.957874 C = 3043.117415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.274 5.274 3 N -0.450 5.450 4 C 0.243 3.757 5 C -0.471 4.471 6 H 0.092 0.908 7 C 0.046 3.954 8 N -0.822 5.822 9 Si 1.113 2.887 10 H -0.310 1.310 11 H -0.267 1.267 12 H -0.284 1.284 13 C -0.363 4.363 14 C 0.055 3.945 15 C -0.044 4.044 16 C -0.101 4.101 17 C -0.160 4.160 18 C 0.424 3.576 19 O -0.489 6.489 20 H 0.070 0.930 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.283 0.717 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.412 -11.620 0.670 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.050 5.050 3 N -0.288 5.288 4 C 0.103 3.897 5 C -0.508 4.508 6 H 0.110 0.890 7 C -0.173 4.173 8 N -0.448 5.448 9 Si 0.943 3.057 10 H -0.240 1.240 11 H -0.193 1.193 12 H -0.211 1.211 13 C -0.377 4.377 14 C -0.084 4.084 15 C -0.082 4.082 16 C -0.139 4.139 17 C -0.198 4.198 18 C 0.306 3.694 19 O -0.368 6.368 20 H 0.088 0.912 21 H 0.097 0.903 22 H 0.104 0.896 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.528 -9.128 0.697 14.721 hybrid contribution 1.376 -2.182 -0.129 2.583 sum -10.151 -11.310 0.569 15.208 Atomic orbital electron populations 1.21843 0.76540 1.03800 1.02900 1.44227 1.06079 1.02815 1.51875 1.73577 1.03651 1.08655 1.42962 1.20090 0.89594 0.89628 0.90433 1.19994 0.93485 0.91869 1.45454 0.89030 1.27384 1.07133 0.93163 0.89660 1.70573 1.01728 1.38697 1.33764 0.82752 0.71980 0.71853 0.79162 1.23956 1.19334 1.21104 1.21400 0.92163 0.94940 1.29197 1.21631 0.91972 0.89907 1.04893 1.20048 0.98302 0.88199 1.01696 1.21381 0.93358 0.98826 1.00378 1.22318 0.98492 0.97252 1.01775 1.21276 0.87149 0.88672 0.72264 1.90463 1.22814 1.82554 1.41015 0.91184 0.90286 0.89552 0.90536 0.90392 0.90972 0.90980 0.91464 0.89379 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.27 11.11 59.85 0.66 1.94 15 2 N -0.27 -5.71 3.64 -63.32 -0.23 -5.94 15 3 N -0.45 -11.60 7.35 33.14 0.24 -11.36 15 4 C 0.24 6.84 6.67 -83.11 -0.55 6.28 15 5 C -0.47 -14.28 9.85 -37.86 -0.37 -14.65 15 6 H 0.09 2.96 7.56 -52.49 -0.40 2.56 15 7 C 0.05 1.36 5.52 -17.32 -0.10 1.26 15 8 N -0.82 -24.18 13.65 55.55 0.76 -23.42 15 9 Si 1.11 28.22 25.95 -169.99 -4.41 23.81 15 10 H -0.31 -7.62 7.11 56.52 0.40 -7.21 15 11 H -0.27 -6.68 6.77 56.52 0.38 -6.30 15 12 H -0.28 -7.14 7.11 56.52 0.40 -6.74 15 13 C -0.36 -8.91 6.36 -103.34 -0.66 -9.56 15 14 C 0.05 1.08 6.82 -81.69 -0.56 0.52 15 15 C -0.04 -0.58 5.79 -27.86 -0.16 -0.74 15 16 C -0.10 -1.30 5.80 -26.53 -0.15 -1.46 15 17 C -0.16 -2.53 6.17 -26.99 -0.17 -2.69 15 18 C 0.42 9.68 7.08 -30.36 -0.21 9.47 15 19 O -0.49 -13.05 17.47 5.48 0.10 -12.96 15 20 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.08 0.80 7.85 -51.93 -0.41 0.40 15 22 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.28 8.15 8.72 -40.82 -0.36 7.80 15 24 H 0.08 0.89 8.14 -51.93 -0.42 0.46 15 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 15 26 H 0.07 0.68 8.14 -51.93 -0.42 0.25 15 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 28 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 LS Contribution 249.46 15.07 3.76 3.76 Total: -1.00 -35.52 249.46 -5.41 -40.93 By element: Atomic # 1 Polarization: -1.83 SS G_CDS: -3.36 Total: -5.19 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.27 Total: -9.63 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.77 Total: -40.72 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.10 Total: -12.96 kcal Atomic # 14 Polarization: 28.22 SS G_CDS: -4.41 Total: 23.81 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -35.52 -5.41 -40.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076632.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.425 kcal (2) G-P(sol) polarization free energy of solvation -35.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds