Wall clock time and date at job start Mon Mar 30 2020 03:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28739 * 124.01756 * 2 1 4 4 C 1.33351 * 110.97863 * 179.89893 * 3 2 1 5 5 C 1.40967 * 127.39804 * 179.97438 * 4 3 2 6 6 H 1.07998 * 119.99552 * 186.03947 * 5 4 3 7 7 C 1.40084 * 120.00209 * 6.03220 * 5 4 3 8 8 N 1.30750 * 120.00028 * 184.16599 * 7 5 4 9 9 Si 1.86805 * 119.99799 * 4.16878 * 7 5 4 10 10 H 1.48496 * 109.46840 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47191 * 299.99961 * 9 7 5 12 12 H 1.48503 * 109.47137 * 59.99986 * 9 7 5 13 13 C 1.45899 * 105.20273 * 0.24075 * 4 3 2 14 14 C 1.33334 * 124.02221 * 179.97438 * 2 1 3 15 15 C 1.50538 * 130.57308 * 0.31287 * 14 2 1 16 16 C 1.53198 * 109.19673 * 159.53462 * 15 14 2 17 17 C 1.53201 * 110.82583 * 52.51715 * 16 15 14 18 18 C 1.46125 * 132.63844 * 180.76458 * 13 4 3 19 19 O 1.21364 * 122.44988 * 347.89414 * 18 13 4 20 20 H 1.08997 * 109.47122 * 90.02969 * 1 2 3 21 21 H 1.09005 * 109.46707 * 210.02878 * 1 2 3 22 22 H 1.08998 * 109.47204 * 330.02772 * 1 2 3 23 23 H 0.97000 * 120.00391 * 354.83893 * 8 7 5 24 24 H 1.08995 * 109.51570 * 279.45471 * 15 14 2 25 25 H 1.09001 * 109.51280 * 39.56601 * 15 14 2 26 26 H 1.08993 * 109.20663 * 172.86859 * 16 15 14 27 27 H 1.09004 * 109.20881 * 292.22149 * 16 15 14 28 28 H 1.08994 * 109.67764 * 55.14685 * 17 16 15 29 29 H 1.09003 * 109.67322 * 175.65264 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1852 1.0671 0.0000 4 6 3.4844 0.7662 0.0022 5 6 4.5711 1.6641 0.0024 6 1 5.5799 1.2908 -0.0941 7 6 4.3425 3.0405 0.1276 8 7 5.3422 3.8793 0.0461 9 14 2.6095 3.6774 0.4111 10 1 2.6365 5.1589 0.5087 11 1 1.7412 3.2713 -0.7230 12 1 2.0733 3.1084 1.6736 13 6 3.5395 -0.6917 -0.0022 14 6 2.2110 -1.1051 0.0005 15 6 1.8112 -2.5564 -0.0051 16 6 2.9864 -3.4008 -0.5078 17 6 4.2603 -3.0870 0.2833 18 6 4.6509 -1.6403 0.0119 19 8 5.7995 -1.3005 -0.1836 20 1 -0.3633 -0.0005 -1.0276 21 1 -0.3633 -0.8898 0.5143 22 1 -0.3633 0.8902 0.5134 23 1 6.2503 3.5461 -0.0259 24 1 1.5472 -2.8652 1.0063 25 1 0.9539 -2.6953 -0.6638 26 1 2.7440 -4.4572 -0.3930 27 1 3.1579 -3.1849 -1.5625 28 1 4.0737 -3.2231 1.3485 29 1 5.0636 -3.7508 -0.0364 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261076632.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:06 Heat of formation + Delta-G solvation = -16.243226 kcal Electronic energy + Delta-G solvation = -14950.458570 eV Core-core repulsion = 12452.005007 eV Total energy + Delta-G solvation = -2498.453563 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.79072 -39.63974 -36.58244 -35.81881 -33.81218 -30.75746 -29.40708 -29.19466 -25.83492 -23.53503 -22.95131 -21.39820 -19.76680 -18.93593 -17.67387 -16.94552 -16.32509 -15.75831 -15.66527 -15.27925 -15.22612 -14.88847 -14.35144 -13.82955 -13.72381 -13.36627 -13.34284 -12.66623 -12.43300 -12.36612 -11.93800 -11.80008 -11.68576 -11.27864 -10.63521 -10.14631 -9.88183 -9.38376 -9.31451 -6.68680 0.58191 1.31341 1.42484 1.80206 1.82377 2.20256 2.32048 2.45207 3.23400 3.48356 3.76116 3.92598 4.10381 4.14791 4.46249 4.47723 4.62261 4.66718 4.74904 4.82688 4.87179 5.04772 5.15687 5.27701 5.35086 5.41350 5.48983 6.10404 6.34007 6.49321 6.83289 7.04155 7.73062 8.00361 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.030197 B = 0.012894 C = 0.009199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.025336 B = 2170.957874 C = 3043.117415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.282 5.282 3 N -0.461 5.461 4 C 0.209 3.791 5 C -0.513 4.513 6 H 0.044 0.956 7 C 0.010 3.990 8 N -0.849 5.849 9 Si 1.161 2.839 10 H -0.299 1.299 11 H -0.262 1.262 12 H -0.281 1.281 13 C -0.421 4.421 14 C 0.095 3.905 15 C -0.042 4.042 16 C -0.098 4.098 17 C -0.146 4.146 18 C 0.407 3.593 19 O -0.551 6.551 20 H 0.093 0.907 21 H 0.130 0.870 22 H 0.086 0.914 23 H 0.272 0.728 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.128 0.872 27 H 0.053 0.947 28 H 0.113 0.887 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.880 -15.206 1.074 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.058 5.058 3 N -0.299 5.299 4 C 0.066 3.934 5 C -0.551 4.551 6 H 0.062 0.938 7 C -0.203 4.203 8 N -0.476 5.476 9 Si 0.986 3.014 10 H -0.228 1.228 11 H -0.188 1.188 12 H -0.208 1.208 13 C -0.433 4.433 14 C -0.046 4.046 15 C -0.080 4.080 16 C -0.135 4.135 17 C -0.184 4.184 18 C 0.294 3.706 19 O -0.434 6.434 20 H 0.111 0.889 21 H 0.149 0.851 22 H 0.105 0.895 23 H 0.082 0.918 24 H 0.135 0.865 25 H 0.135 0.865 26 H 0.146 0.854 27 H 0.072 0.928 28 H 0.131 0.869 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.038 -12.732 1.098 20.506 hybrid contribution 2.631 -1.302 -0.266 2.947 sum -13.407 -14.033 0.832 19.426 Atomic orbital electron populations 1.22455 0.72107 1.06510 1.05290 1.44869 1.08539 1.01993 1.50380 1.73380 1.02956 1.11548 1.41982 1.20226 0.90205 0.91779 0.91218 1.19809 0.92562 0.93414 1.49281 0.93773 1.28570 1.09821 0.93068 0.88876 1.70628 1.01428 1.38598 1.36932 0.82171 0.68316 0.71874 0.79089 1.22780 1.18797 1.20774 1.21969 0.95772 0.93916 1.31670 1.22560 0.89648 0.92775 0.99572 1.20477 0.99780 0.82586 1.05184 1.21486 0.91255 1.01961 0.98828 1.22316 1.00857 0.91308 1.03913 1.22494 0.85860 0.92237 0.70029 1.90430 1.25023 1.84322 1.43670 0.88867 0.85131 0.89519 0.91788 0.86454 0.86522 0.85354 0.92785 0.86887 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.67 11.11 127.77 1.42 3.09 15 2 N -0.28 -10.76 3.64 -354.24 -1.29 -12.05 15 3 N -0.46 -23.49 7.35 -49.06 -0.36 -23.85 15 4 C 0.21 12.24 6.67 41.57 0.28 12.52 15 5 C -0.51 -33.71 9.85 23.39 0.23 -33.48 15 6 H 0.04 3.19 7.56 -2.91 -0.02 3.17 15 7 C 0.01 0.59 5.52 85.30 0.47 1.06 15 8 N -0.85 -53.48 13.65 21.85 0.30 -53.18 15 9 Si 1.16 59.03 25.95 68.60 1.78 60.81 15 10 H -0.30 -14.40 7.11 99.48 0.71 -13.69 15 11 H -0.26 -12.88 6.77 99.48 0.67 -12.21 15 12 H -0.28 -13.90 7.11 99.48 0.71 -13.20 15 13 C -0.42 -20.71 6.36 -19.03 -0.12 -20.83 15 14 C 0.09 3.37 6.82 42.49 0.29 3.66 15 15 C -0.04 -0.80 5.79 29.86 0.17 -0.62 15 16 C -0.10 -1.88 5.80 30.73 0.18 -1.71 15 17 C -0.15 -4.09 6.17 30.43 0.19 -3.90 15 18 C 0.41 18.89 7.08 28.25 0.20 19.09 15 19 O -0.55 -31.42 17.47 -3.29 -0.06 -31.48 15 20 H 0.09 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.13 1.60 7.85 -2.38 -0.02 1.58 15 22 H 0.09 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.27 17.17 8.72 -92.71 -0.81 16.36 15 24 H 0.12 1.55 8.14 -2.39 -0.02 1.53 15 25 H 0.12 1.38 8.14 -2.39 -0.02 1.36 15 26 H 0.13 1.25 8.14 -2.39 -0.02 1.23 15 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 15 28 H 0.11 2.65 8.14 -2.39 -0.02 2.63 15 29 H 0.09 2.39 8.14 -2.39 -0.02 2.37 15 Total: -1.00 -89.64 249.46 4.76 -84.88 By element: Atomic # 1 Polarization: -5.10 SS G_CDS: 1.08 Total: -4.02 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 3.31 Total: -21.12 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -1.35 Total: -89.08 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.06 Total: -31.48 kcal Atomic # 14 Polarization: 59.03 SS G_CDS: 1.78 Total: 60.81 kcal Total: -89.64 4.76 -84.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076632.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.634 kcal (2) G-P(sol) polarization free energy of solvation -89.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds