Wall clock time and date at job start Mon Mar 30 2020 02:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 117.00572 * 2 1 4 4 C 1.38795 * 119.88107 * 359.97438 * 3 2 1 5 5 C 1.38249 * 119.71213 * 179.53954 * 4 3 2 6 6 C 1.37792 * 120.04720 * 359.97438 * 5 4 3 7 7 C 1.38929 * 120.87174 * 0.39290 * 6 5 4 8 8 C 1.38415 * 119.88682 * 179.73071 * 3 2 1 9 9 O 1.36147 * 111.21387 * 178.96620 * 7 6 5 10 10 C 1.43773 * 109.20528 * 19.36694 * 9 7 6 11 11 H 1.09003 * 110.75146 * 213.75638 * 10 9 7 12 12 C 1.50695 * 110.75188 * 90.39754 * 10 9 7 13 13 H 1.08002 * 120.00662 * 241.45876 * 12 10 9 14 14 C 1.37881 * 119.99721 * 61.45656 * 12 10 9 15 15 N 1.31518 * 120.00391 * 179.97438 * 14 12 10 16 16 Si 1.86800 * 119.99991 * 0.02562 * 14 12 10 17 17 H 1.48501 * 109.47469 * 89.99769 * 16 14 12 18 18 H 1.48497 * 109.47096 * 210.00068 * 16 14 12 19 19 H 1.48501 * 109.47090 * 329.99855 * 16 14 12 20 20 C 1.51671 * 132.09860 * 180.90942 * 6 5 4 21 21 H 1.09008 * 109.46430 * 300.00479 * 1 2 3 22 22 H 1.09001 * 109.46866 * 59.99935 * 1 2 3 23 23 H 1.08996 * 109.47315 * 180.02562 * 1 2 3 24 24 H 1.08005 * 120.14225 * 359.56217 * 4 3 2 25 25 H 1.08000 * 119.97614 * 180.02562 * 5 4 3 26 26 H 1.08001 * 119.90427 * 0.24883 * 8 3 2 27 27 H 0.96993 * 120.00369 * 180.02562 * 15 14 12 28 28 H 1.08998 * 110.93704 * 282.54767 * 20 6 5 29 29 H 1.08997 * 110.93111 * 46.22369 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2878 2.3734 -0.0005 5 6 1.9192 3.6032 0.0091 6 6 3.2953 3.6723 0.0197 7 6 4.0671 2.5171 0.0128 8 6 3.4285 1.2804 0.0056 9 8 5.3961 2.8126 0.0026 10 6 5.5833 4.1652 0.4525 11 1 6.4262 4.6294 -0.0596 12 6 5.7743 4.2094 1.9467 13 1 5.0720 4.7484 2.5653 14 6 6.8457 3.5615 2.5241 15 7 7.0128 3.6004 3.8280 16 14 8.0609 2.6297 1.4542 17 1 9.1557 3.5427 1.0381 18 1 8.6290 1.4942 2.2242 19 1 7.3639 2.1115 0.2497 20 6 4.2543 4.8470 0.0495 21 1 -0.3632 0.5140 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 0.2093 2.3174 -0.0081 25 1 1.3334 4.5105 0.0092 26 1 4.0133 0.3724 0.0060 27 1 7.7668 3.1450 4.2342 28 1 4.3359 5.3082 -0.9347 29 1 3.9499 5.5793 0.7972 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087995.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:23 Heat of formation + Delta-G solvation = -61.375925 kcal Electronic energy + Delta-G solvation = -14671.454112 eV Core-core repulsion = 12138.750697 eV Total energy + Delta-G solvation = -2532.703415 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.87679 -40.25212 -37.13012 -34.83561 -33.20957 -31.08218 -30.35703 -28.10000 -26.78051 -23.64535 -22.49657 -22.31163 -19.62380 -18.69187 -17.69810 -17.10689 -16.74112 -16.55054 -16.21085 -15.68954 -15.01727 -14.94327 -14.35046 -13.96294 -13.64587 -13.26711 -13.09373 -12.93568 -12.59027 -12.54543 -12.02955 -11.91641 -11.74568 -11.34618 -11.04761 -10.80461 -9.43771 -8.73387 -8.42837 -6.58129 0.46357 0.51732 1.32906 1.35522 1.61840 2.14646 2.34739 2.75426 2.91968 3.23645 3.75331 3.97328 4.06737 4.20674 4.32346 4.46238 4.47901 4.56652 4.68614 4.78684 4.86552 5.00009 5.21702 5.29252 5.39361 5.45090 5.58149 5.68558 6.05407 6.40715 6.52038 6.59503 7.19220 8.71123 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.037682 B = 0.008992 C = 0.008271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.882436 B = 3112.985462 C = 3384.643192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.153 3.847 4 C -0.241 4.241 5 C -0.035 4.035 6 C -0.218 4.218 7 C 0.137 3.863 8 C -0.217 4.217 9 O -0.329 6.329 10 C 0.160 3.840 11 H 0.091 0.909 12 C -0.548 4.548 13 H 0.044 0.956 14 C 0.032 3.968 15 N -0.931 5.931 16 Si 0.932 3.068 17 H -0.262 1.262 18 H -0.289 1.289 19 H -0.224 1.224 20 C -0.082 4.082 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.121 0.879 24 H 0.165 0.835 25 H 0.154 0.846 26 H 0.119 0.881 27 H 0.270 0.730 28 H 0.099 0.901 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.363 -3.128 -10.257 16.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.108 3.892 4 C -0.259 4.259 5 C -0.053 4.053 6 C -0.219 4.219 7 C 0.091 3.909 8 C -0.236 4.236 9 O -0.243 6.243 10 C 0.106 3.894 11 H 0.108 0.892 12 C -0.585 4.585 13 H 0.062 0.938 14 C -0.169 4.169 15 N -0.569 5.569 16 Si 0.755 3.245 17 H -0.187 1.187 18 H -0.215 1.215 19 H -0.147 1.147 20 C -0.119 4.119 21 H 0.083 0.917 22 H 0.090 0.910 23 H 0.139 0.861 24 H 0.182 0.818 25 H 0.172 0.828 26 H 0.137 0.863 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.985 -3.486 -10.176 16.104 hybrid contribution 0.720 -0.214 0.413 0.857 sum -11.265 -3.701 -9.763 15.359 Atomic orbital electron populations 1.23399 0.75929 1.05669 1.02587 1.86007 1.23928 1.26438 1.88634 1.18418 0.90547 0.85284 0.94963 1.21296 1.01070 0.90781 1.12775 1.20392 0.91474 0.98705 0.94739 1.21066 0.95412 0.94925 1.10509 1.19620 0.85240 0.94134 0.91949 1.19339 0.92670 0.95736 1.15893 1.87153 1.20423 1.36295 1.80474 1.21490 0.96777 0.77435 0.93672 0.89175 1.21507 1.10829 1.34428 0.91753 0.93819 1.25891 0.99428 0.95554 0.96014 1.70044 1.31208 1.43766 1.11919 0.85997 0.78721 0.78792 0.81008 1.18720 1.21503 1.14662 1.21612 0.92148 0.95908 1.02223 0.91749 0.91041 0.86107 0.81776 0.82804 0.86250 0.92083 0.88313 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 15 2 O -0.34 -9.94 10.49 -92.44 -0.97 -10.91 15 3 C 0.15 5.26 6.67 22.45 0.15 5.41 15 4 C -0.24 -6.99 9.04 22.41 0.20 -6.79 15 5 C -0.04 -1.11 10.03 22.17 0.22 -0.89 15 6 C -0.22 -8.67 6.26 -19.49 -0.12 -8.79 15 7 C 0.14 6.20 6.94 22.66 0.16 6.36 15 8 C -0.22 -8.96 10.00 22.54 0.23 -8.74 15 9 O -0.33 -16.20 7.86 -95.22 -0.75 -16.95 15 10 C 0.16 7.61 2.88 30.43 0.09 7.70 15 11 H 0.09 3.97 7.71 -2.39 -0.02 3.95 15 12 C -0.55 -31.62 9.30 25.60 0.24 -31.39 15 13 H 0.04 2.76 7.83 -2.91 -0.02 2.74 15 14 C 0.03 1.89 5.47 84.65 0.46 2.35 15 15 N -0.93 -58.45 13.96 21.45 0.30 -58.15 15 16 Si 0.93 45.39 27.13 68.60 1.86 47.25 15 17 H -0.26 -11.93 7.11 99.48 0.71 -11.22 15 18 H -0.29 -14.04 7.11 99.48 0.71 -13.33 15 19 H -0.22 -10.69 5.38 99.48 0.54 -10.15 15 20 C -0.08 -3.21 6.64 30.74 0.20 -3.01 15 21 H 0.06 1.02 7.66 -2.38 -0.02 1.00 15 22 H 0.07 1.01 7.65 -2.39 -0.02 0.99 15 23 H 0.12 1.48 8.14 -2.39 -0.02 1.46 15 24 H 0.16 3.34 6.29 -2.91 -0.02 3.32 15 25 H 0.15 3.71 8.06 -2.91 -0.02 3.69 15 26 H 0.12 4.88 8.06 -2.91 -0.02 4.86 15 27 H 0.27 15.84 8.31 -92.71 -0.77 15.07 15 28 H 0.10 3.18 8.14 -2.39 -0.02 3.16 15 29 H 0.08 3.19 7.76 -2.39 -0.02 3.17 15 Total: -1.00 -70.77 247.68 4.36 -66.41 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.98 Total: 8.71 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 2.94 Total: -36.36 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.30 Total: -58.15 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -1.72 Total: -27.86 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.86 Total: 47.25 kcal Total: -70.77 4.36 -66.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087995.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.038 kcal (2) G-P(sol) polarization free energy of solvation -70.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds