Wall clock time and date at job start Mon Mar 30 2020 02:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 N 1.31794 * 119.09517 * 89.99985 * 10 9 7 12 12 C 1.32794 * 120.71651 * 179.97438 * 11 10 9 13 13 O 1.35519 * 120.50877 * 180.02562 * 12 11 10 14 14 C 1.39414 * 118.97512 * 0.02562 * 12 11 10 15 15 C 1.38189 * 118.35305 * 359.97438 * 14 12 11 16 16 C 1.50704 * 120.41165 * 180.02562 * 15 14 12 17 17 C 1.53001 * 117.49851 * 343.61856 * 16 15 14 18 18 C 1.52998 * 117.49316 * 274.99475 * 16 15 14 19 19 N 1.31757 * 119.09088 * 269.72997 * 10 9 7 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 0.96705 * 113.99589 * 90.00475 * 13 12 11 24 24 H 1.08004 * 120.82269 * 179.97438 * 14 12 11 25 25 H 1.08994 * 115.55166 * 129.33190 * 16 15 14 26 26 H 1.09001 * 117.49479 * 359.97438 * 17 16 15 27 27 H 1.08991 * 117.50188 * 145.02242 * 17 16 15 28 28 H 1.08995 * 117.50059 * 214.97826 * 18 16 15 29 29 H 1.09000 * 117.50499 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 7 2.6466 -4.1318 1.1522 12 6 3.5088 -5.1411 1.1897 13 8 3.9338 -5.6390 2.3763 14 6 3.9699 -5.6804 -0.0103 15 6 3.5068 -5.1387 -1.1942 16 6 3.9742 -5.6863 -2.5181 17 6 5.2274 -6.5640 -2.5168 18 6 5.2887 -5.1437 -3.0825 19 7 2.6423 -4.1351 -1.1508 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 3.3855 -6.3574 2.7204 24 1 4.6717 -6.5014 -0.0146 25 1 3.1860 -5.9349 -3.2287 26 1 5.7140 -6.7450 -1.5583 27 1 5.2638 -7.3904 -3.2264 28 1 5.3655 -5.0358 -4.1643 29 1 5.8152 -4.3904 -2.4965 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261088438.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:14 Heat of formation + Delta-G solvation = 0.537073 kcal Electronic energy + Delta-G solvation = -14178.153969 eV Core-core repulsion = 11680.428055 eV Total energy + Delta-G solvation = -2497.725914 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.21965 -38.87508 -38.15136 -35.42009 -33.91354 -32.92044 -30.07678 -26.37155 -25.85547 -23.83665 -23.10957 -21.62199 -19.62305 -18.87426 -18.67127 -17.20256 -16.71167 -16.38364 -16.26635 -15.38030 -15.22598 -14.64363 -13.98043 -13.70329 -13.30280 -12.98214 -12.77643 -12.62990 -12.39205 -12.19718 -12.10065 -11.65322 -11.49604 -11.25564 -10.97267 -10.65298 -10.24213 -10.19283 -8.27099 -6.39092 -0.11063 0.04185 1.37636 1.41522 1.49726 2.35253 2.38507 2.61510 2.76088 3.05293 3.17234 3.39403 3.87936 4.00068 4.03602 4.10487 4.30831 4.41838 4.63009 4.79630 4.98958 5.12946 5.14569 5.25140 5.32392 5.37384 5.61880 6.00133 6.11898 6.53899 6.65129 7.25064 7.27222 8.84443 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.028154 B = 0.007871 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.282099 B = 3556.478609 C = 4069.713132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.529 4.529 8 H 0.042 0.958 9 C 0.089 3.911 10 C 0.366 3.634 11 N -0.574 5.574 12 C 0.348 3.652 13 O -0.478 6.478 14 C -0.249 4.249 15 C 0.205 3.795 16 C -0.134 4.134 17 C -0.136 4.136 18 C -0.164 4.164 19 N -0.545 5.545 20 H 0.270 0.730 21 H 0.024 0.976 22 H 0.029 0.971 23 H 0.426 0.574 24 H 0.188 0.812 25 H 0.131 0.869 26 H 0.108 0.892 27 H 0.133 0.867 28 H 0.121 0.879 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.129 -14.851 -3.409 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.568 4.568 8 H 0.060 0.940 9 C 0.051 3.949 10 C 0.101 3.899 11 N -0.300 5.300 12 C 0.161 3.839 13 O -0.289 6.289 14 C -0.272 4.272 15 C 0.060 3.940 16 C -0.153 4.153 17 C -0.173 4.173 18 C -0.202 4.202 19 N -0.262 5.262 20 H 0.079 0.921 21 H 0.043 0.957 22 H 0.047 0.953 23 H 0.289 0.711 24 H 0.205 0.795 25 H 0.149 0.851 26 H 0.127 0.873 27 H 0.151 0.849 28 H 0.139 0.861 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.787 -13.664 -3.385 17.145 hybrid contribution 0.135 0.127 0.456 0.492 sum 9.921 -13.537 -2.930 17.038 Atomic orbital electron populations 1.70038 1.07431 1.28443 1.50180 1.25832 0.95906 1.02861 0.94024 0.85428 0.78360 0.77821 0.78982 1.19299 1.19580 1.19625 1.20938 0.92354 0.90847 1.52663 0.94016 1.17895 0.91553 0.88091 0.97389 1.23476 0.92154 0.92509 0.81800 1.67843 1.15645 1.13944 1.32614 1.19803 0.88390 0.88699 0.86990 1.84672 1.53572 1.56575 1.34075 1.22873 1.07081 1.05974 0.91276 1.21414 0.88648 0.88150 0.95809 1.20886 0.93865 1.07121 0.93448 1.23263 0.95941 0.93975 1.04130 1.23059 0.96744 0.98097 1.02258 1.68127 1.15118 1.12507 1.30424 0.92078 0.95737 0.95333 0.71149 0.79511 0.85102 0.87333 0.84856 0.86088 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.33 13.29 21.45 0.28 -56.04 15 2 C 0.01 0.77 5.46 84.66 0.46 1.24 15 3 Si 0.97 45.80 29.54 68.60 2.03 47.83 15 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 15 5 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 6 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 7 C -0.53 -32.25 9.09 25.60 0.23 -32.01 15 8 H 0.04 2.56 7.74 -2.91 -0.02 2.54 15 9 C 0.09 5.18 5.41 29.10 0.16 5.33 15 10 C 0.37 18.48 6.83 138.76 0.95 19.43 15 11 N -0.57 -26.78 10.36 -300.69 -3.12 -29.90 15 12 C 0.35 12.48 7.83 84.83 0.66 13.15 15 13 O -0.48 -13.34 13.58 -88.21 -1.20 -14.53 15 14 C -0.25 -7.44 9.39 22.54 0.21 -7.23 15 15 C 0.20 7.03 6.49 42.44 0.28 7.31 15 16 C -0.13 -3.31 6.25 -11.54 -0.07 -3.38 15 17 C -0.14 -2.09 9.82 30.60 0.30 -1.79 15 18 C -0.16 -3.42 10.23 30.60 0.31 -3.11 15 19 N -0.55 -24.75 10.27 -176.23 -1.81 -26.56 15 20 H 0.27 15.34 8.31 -92.71 -0.77 14.57 15 21 H 0.02 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.03 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.43 6.68 9.06 -74.05 -0.67 6.01 15 24 H 0.19 3.74 6.38 -2.91 -0.02 3.72 15 25 H 0.13 3.06 8.14 -2.39 -0.02 3.04 15 26 H 0.11 1.48 6.47 -2.39 -0.02 1.46 15 27 H 0.13 1.29 8.14 -2.39 -0.02 1.27 15 28 H 0.12 2.05 8.14 -2.39 -0.02 2.03 15 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 Total: -1.00 -75.47 261.97 0.19 -75.28 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 0.51 Total: 4.98 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 3.49 Total: -1.06 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -4.64 Total: -112.50 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -1.20 Total: -14.53 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -75.47 0.19 -75.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261088438.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.816 kcal (2) G-P(sol) polarization free energy of solvation -75.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds