Wall clock time and date at job start Mon Mar 30 2020 02:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32339 * 120.44127 * 2 1 4 4 C 1.32298 * 120.71105 * 180.02562 * 3 2 1 5 5 O 1.35460 * 119.16785 * 179.97438 * 4 3 2 6 6 N 1.32305 * 121.66477 * 0.02562 * 4 3 2 7 7 C 1.32396 * 120.75738 * 359.97434 * 6 4 3 8 8 C 1.38461 * 119.06477 * 0.02562 * 7 6 4 9 9 C 1.51079 * 109.86481 * 180.02562 * 8 7 6 10 10 H 1.08997 * 110.38717 * 136.02532 * 9 8 7 11 11 C 1.50695 * 110.30492 * 258.14294 * 9 8 7 12 12 H 1.08004 * 120.00546 * 357.45772 * 11 9 8 13 13 C 1.37885 * 119.99721 * 177.18023 * 11 9 8 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46986 * 90.00256 * 15 13 11 17 17 H 1.48496 * 109.47029 * 210.00273 * 15 13 11 18 18 H 1.48499 * 109.47352 * 330.00102 * 15 13 11 19 19 C 1.54407 * 105.14791 * 17.06102 * 9 8 7 20 20 C 1.51190 * 131.23498 * 180.02562 * 7 6 4 21 21 H 1.09002 * 109.47104 * 269.97782 * 1 2 3 22 22 H 1.08998 * 109.47158 * 29.98174 * 1 2 3 23 23 H 1.09004 * 109.47146 * 149.97650 * 1 2 3 24 24 H 0.96706 * 114.00024 * 89.99830 * 5 4 3 25 25 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 26 26 H 1.08998 * 110.81318 * 92.08981 * 19 9 8 27 27 H 1.09007 * 110.81121 * 215.40676 * 19 9 8 28 28 H 1.08994 * 110.30029 * 43.99195 * 20 7 6 29 29 H 1.09002 * 110.37860 * 281.89035 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1775 1.1410 0.0000 4 6 3.5004 1.1472 -0.0005 5 8 4.1551 2.3331 -0.0010 6 7 4.2003 0.0244 -0.0015 7 6 3.5929 -1.1520 -0.0016 8 6 2.2089 -1.1945 -0.0011 9 6 1.7393 -2.6304 -0.0006 10 1 0.9227 -2.7627 0.7091 11 6 1.3003 -3.0375 -1.3835 12 1 1.3133 -2.3172 -2.1882 13 6 0.8874 -4.3311 -1.6228 14 7 0.8763 -5.2095 -0.6441 15 14 0.3425 -4.8356 -3.3369 16 1 1.5141 -5.3317 -4.1028 17 1 -0.6750 -5.9125 -3.2360 18 1 -0.2448 -3.6637 -4.0346 19 6 2.9684 -3.4567 0.4364 20 6 4.1459 -2.5591 -0.0021 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8901 -0.5135 23 1 -0.3634 -0.8898 -0.5142 24 1 4.3455 2.6777 0.8823 25 1 0.5854 -6.1195 -0.8125 26 1 2.9731 -3.6021 1.5166 27 1 2.9947 -4.4154 -0.0818 28 1 4.9690 -2.6422 0.7076 29 1 4.4803 -2.8352 -1.0022 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261096881.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:35 Heat of formation + Delta-G solvation = -22.241189 kcal Electronic energy + Delta-G solvation = -14804.707468 eV Core-core repulsion = 12305.993815 eV Total energy + Delta-G solvation = -2498.713654 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.41417 -39.11845 -37.21423 -35.47770 -34.07644 -31.38984 -29.58642 -28.61800 -26.18594 -24.08116 -22.97786 -21.30283 -19.65646 -18.99064 -18.35703 -17.11537 -16.74721 -15.83187 -15.31176 -14.89378 -14.68190 -14.19121 -13.88904 -13.61534 -13.35150 -13.09554 -12.98101 -12.81721 -12.72699 -12.47456 -12.10442 -11.83562 -11.43379 -11.37546 -11.11855 -10.45856 -10.09590 -9.73065 -8.12031 -6.24610 -0.06904 0.02408 1.43655 1.47503 1.55142 2.04566 2.43127 2.65905 3.01871 3.17240 3.64073 3.83183 3.95016 4.25149 4.42678 4.57241 4.72760 4.74631 4.87509 4.99172 5.16571 5.22570 5.27012 5.44661 5.54789 5.77096 5.80192 5.99114 6.28140 6.58731 6.79361 7.02366 7.42981 8.93305 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.036680 B = 0.009367 C = 0.008552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.183129 B = 2988.627325 C = 3273.417046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.184 3.816 3 N -0.539 5.539 4 C 0.465 3.535 5 O -0.462 6.462 6 N -0.544 5.544 7 C 0.168 3.832 8 C -0.183 4.183 9 C 0.094 3.906 10 H 0.025 0.975 11 C -0.519 4.519 12 H 0.042 0.958 13 C 0.031 3.969 14 N -0.905 5.905 15 Si 0.946 3.054 16 H -0.278 1.278 17 H -0.281 1.281 18 H -0.275 1.275 19 C -0.097 4.097 20 C -0.057 4.057 21 H 0.099 0.901 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.426 0.574 25 H 0.265 0.735 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 6.251 3.389 7.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.040 3.960 3 N -0.266 5.266 4 C 0.160 3.840 5 O -0.267 6.267 6 N -0.270 5.270 7 C 0.023 3.977 8 C -0.187 4.187 9 C 0.074 3.926 10 H 0.043 0.957 11 C -0.556 4.556 12 H 0.060 0.940 13 C -0.170 4.170 14 N -0.543 5.543 15 Si 0.772 3.228 16 H -0.203 1.203 17 H -0.206 1.206 18 H -0.200 1.200 19 C -0.135 4.135 20 C -0.094 4.094 21 H 0.117 0.883 22 H 0.106 0.894 23 H 0.101 0.899 24 H 0.287 0.713 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.670 7.011 2.841 8.022 hybrid contribution -0.536 -0.870 -0.465 1.123 sum 2.134 6.141 2.375 6.922 Atomic orbital electron populations 1.20783 0.85900 1.04322 1.04435 1.21482 0.98628 0.85789 0.90119 1.67839 1.09246 1.31120 1.18415 1.20168 0.84289 0.85496 0.94074 1.84675 1.75710 1.30381 1.35944 1.67096 1.43380 0.98228 1.18308 1.22469 0.92010 0.93621 0.89611 1.22728 0.96646 0.99326 1.00008 1.18054 0.94462 0.83651 0.96405 0.95655 1.21015 1.44564 0.95752 0.94314 0.94008 1.25477 0.95285 0.96368 0.99825 1.70011 1.47282 1.04414 1.32612 0.85739 0.78201 0.77905 0.80924 1.20335 1.20616 1.19970 1.22198 0.93202 0.99148 0.98966 1.21076 0.99418 0.85671 1.03279 0.88269 0.89360 0.89907 0.71265 0.92531 0.92773 0.90255 0.88299 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.17 10.11 71.24 0.72 -2.45 15 2 C 0.18 7.27 6.82 42.56 0.29 7.56 15 3 N -0.54 -20.95 10.40 -301.54 -3.14 -24.09 15 4 C 0.46 17.62 8.71 180.58 1.57 19.20 15 5 O -0.46 -14.04 13.64 -87.58 -1.19 -15.23 15 6 N -0.54 -21.84 10.47 -301.08 -3.15 -25.00 15 7 C 0.17 6.91 7.37 42.68 0.31 7.23 15 8 C -0.18 -7.82 5.29 -19.62 -0.10 -7.93 15 9 C 0.09 4.34 2.31 -11.69 -0.03 4.32 15 10 H 0.03 1.26 8.14 -2.39 -0.02 1.24 15 11 C -0.52 -26.35 8.36 25.60 0.21 -26.13 15 12 H 0.04 2.20 7.76 -2.91 -0.02 2.18 15 13 C 0.03 1.57 5.10 84.66 0.43 2.01 15 14 N -0.90 -47.25 11.82 21.45 0.25 -47.00 15 15 Si 0.95 40.92 29.54 68.60 2.03 42.94 15 16 H -0.28 -11.86 7.11 99.48 0.71 -11.16 15 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 15 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 19 C -0.10 -4.09 6.19 31.55 0.20 -3.89 15 20 C -0.06 -2.12 6.76 30.49 0.21 -1.91 15 21 H 0.10 2.76 8.14 -2.39 -0.02 2.74 15 22 H 0.09 2.55 8.14 -2.39 -0.02 2.53 15 23 H 0.08 2.96 7.58 -2.38 -0.02 2.94 15 24 H 0.43 7.74 9.06 -74.05 -0.67 7.07 15 25 H 0.27 13.25 8.31 -92.71 -0.77 12.48 15 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 15 27 H 0.08 3.71 6.42 -2.38 -0.02 3.69 15 28 H 0.10 3.11 8.14 -2.39 -0.02 3.09 15 29 H 0.09 3.33 8.14 -2.39 -0.02 3.32 15 Total: -1.00 -59.61 252.20 -0.88 -60.49 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.51 Total: 9.89 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 3.81 Total: -2.01 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -6.03 Total: -96.08 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -1.19 Total: -15.23 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Total: -59.61 -0.88 -60.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096881.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.252 kcal (2) G-P(sol) polarization free energy of solvation -59.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds