Wall clock time and date at job start Mon Mar 30 2020 02:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00202 * 2 1 4 4 H 1.48494 * 109.47058 * 269.17211 * 3 2 1 5 5 H 1.48507 * 109.46703 * 29.16958 * 3 2 1 6 6 H 1.48493 * 109.47442 * 149.16743 * 3 2 1 7 7 C 1.37875 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99697 * 14.93176 * 7 2 1 9 9 C 1.50696 * 120.00224 * 195.19746 * 7 2 1 10 10 C 1.50696 * 110.46077 * 293.85865 * 9 7 2 11 11 C 1.38600 * 120.79888 * 351.56240 * 10 9 7 12 12 N 1.32331 * 119.10658 * 179.71932 * 11 10 9 13 13 C 1.31802 * 120.81627 * 0.56724 * 12 11 10 14 14 N 1.31792 * 121.75279 * 359.71430 * 13 12 11 15 15 C 1.32335 * 120.82083 * 359.97438 * 14 13 12 16 16 C 1.54510 * 110.51214 * 56.46169 * 9 7 2 17 17 C 1.54800 * 103.91336 * 118.60784 * 16 9 7 18 18 O 1.44420 * 104.85738 * 336.12346 * 17 16 9 19 19 C 1.44421 * 105.27467 * 40.45943 * 18 17 16 20 20 H 0.97006 * 119.99889 * 359.97438 * 1 2 3 21 21 H 1.08006 * 120.44532 * 0.02562 * 11 10 9 22 22 H 1.07994 * 119.12133 * 179.72171 * 13 12 11 23 23 H 1.08004 * 120.45013 * 180.02562 * 15 14 13 24 24 H 1.08994 * 110.51325 * 237.29195 * 16 9 7 25 25 H 1.09011 * 110.50879 * 359.97438 * 16 9 7 26 26 H 1.09001 * 110.38998 * 217.24869 * 17 16 9 27 27 H 1.08997 * 110.30062 * 94.95400 * 17 16 9 28 28 H 1.09003 * 110.36971 * 200.65403 * 19 18 17 29 29 H 1.08995 * 110.46801 * 78.36713 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5143 2.0363 -1.3999 5 1 1.4379 2.6577 0.6824 6 1 3.5378 1.4454 0.7175 7 6 2.0046 -1.1940 0.0005 8 1 1.4919 -2.1136 -0.2401 9 6 3.4720 -1.2167 0.3427 10 6 4.2695 -0.4898 -0.7093 11 6 3.6720 -0.0658 -1.8858 12 7 4.4026 0.5745 -2.7844 13 6 5.6844 0.8000 -2.5759 14 7 6.2872 0.4065 -1.4720 15 6 5.6193 -0.2341 -0.5261 16 6 3.7133 -0.5899 1.7341 17 6 4.3286 -1.7448 2.5611 18 8 3.8788 -2.9503 1.9052 19 6 3.9708 -2.6712 0.4912 20 1 -0.4850 0.8401 0.0004 21 1 2.6231 -0.2511 -2.0647 22 1 6.2557 1.3211 -3.3297 23 1 6.1192 -0.5535 0.3764 24 1 4.4111 0.2442 1.6615 25 1 2.7711 -0.2631 2.1744 26 1 3.9641 -1.7128 3.5878 27 1 5.4168 -1.6857 2.5419 28 1 3.3315 -3.3510 -0.0721 29 1 5.0035 -2.7546 0.1527 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261142523.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:31 Heat of formation + Delta-G solvation = 16.139824 kcal Electronic energy + Delta-G solvation = -15422.397839 eV Core-core repulsion = 12925.348511 eV Total energy + Delta-G solvation = -2497.049328 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.73838 -38.60503 -34.36983 -33.17381 -31.99999 -29.80100 -28.44415 -25.55238 -23.62336 -23.44137 -21.95398 -19.66567 -17.47180 -16.97617 -16.55765 -15.60279 -15.14464 -14.71342 -14.25191 -14.03807 -13.25701 -13.10788 -12.99660 -12.55606 -12.01803 -11.53533 -11.42226 -11.09961 -10.80480 -10.26708 -10.16462 -9.96306 -9.80777 -9.41617 -9.08080 -8.74183 -8.59827 -8.47984 -6.36623 -4.35592 1.46930 1.60779 3.10570 3.18226 3.28554 4.17601 4.30725 4.54907 4.65102 4.80101 4.90021 5.27182 5.50757 5.57942 5.59594 5.68949 5.75183 5.89494 6.02744 6.23636 6.33774 6.48993 6.57726 6.65674 6.91236 7.02285 7.34792 7.51524 7.59119 8.22583 8.59011 8.71249 9.24929 10.74012 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.022343 B = 0.018853 C = 0.012542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.886979 B = 1484.807095 C = 2232.005836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.087 3.913 3 Si 0.830 3.170 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.246 1.246 7 C -0.516 4.516 8 H 0.085 0.915 9 C 0.058 3.942 10 C -0.152 4.152 11 C 0.157 3.843 12 N -0.524 5.524 13 C 0.259 3.741 14 N -0.529 5.529 15 C 0.125 3.875 16 C -0.148 4.148 17 C 0.047 3.953 18 O -0.373 6.373 19 C 0.071 3.929 20 H 0.268 0.732 21 H 0.185 0.815 22 H 0.186 0.814 23 H 0.157 0.843 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.962 0.100 0.497 8.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.118 4.118 3 Si 0.657 3.343 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.170 1.170 7 C -0.553 4.553 8 H 0.103 0.897 9 C 0.055 3.945 10 C -0.156 4.156 11 C -0.007 4.007 12 N -0.238 5.238 13 C -0.029 4.029 14 N -0.243 5.243 15 C -0.040 4.040 16 C -0.186 4.186 17 C -0.030 4.030 18 O -0.292 6.292 19 C -0.005 4.005 20 H 0.079 0.921 21 H 0.202 0.798 22 H 0.202 0.798 23 H 0.174 0.826 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.228 0.499 -0.106 9.242 hybrid contribution -0.068 0.946 0.532 1.087 sum 9.160 1.444 0.426 9.283 Atomic orbital electron populations 1.69938 1.06238 1.27454 1.47218 1.24953 0.94422 0.98509 0.93910 0.87891 0.81819 0.84907 0.79672 1.18983 1.21601 1.17046 1.20716 0.89745 0.95740 1.49083 0.89713 1.18792 0.95876 0.90848 0.88943 1.22328 0.95284 0.99102 0.98895 1.23688 1.01259 0.87864 0.87933 1.68487 1.07721 1.14276 1.33321 1.24736 0.88999 0.95472 0.93671 1.68288 1.40834 1.12283 1.02910 1.23037 0.91548 0.92484 0.96904 1.23668 1.01340 0.97056 0.96570 1.23412 0.97020 0.85263 0.97320 1.89048 1.87158 1.34744 1.18234 1.23402 0.98237 0.96554 0.82335 0.92134 0.79796 0.79777 0.82622 0.92084 0.89907 0.89986 0.93638 0.89033 0.94320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.60 13.96 55.43 0.77 -23.83 15 2 C 0.09 2.27 4.47 -17.82 -0.08 2.19 15 3 Si 0.83 19.57 22.51 -169.99 -3.83 15.75 15 4 H -0.26 -6.36 6.45 56.52 0.36 -5.99 15 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 6 H -0.25 -5.48 4.20 56.52 0.24 -5.24 15 7 C -0.52 -12.86 7.30 -34.44 -0.25 -13.12 15 8 H 0.08 2.32 7.78 -52.48 -0.41 1.91 15 9 C 0.06 1.21 0.55 -155.25 -0.09 1.12 15 10 C -0.15 -3.05 2.82 -104.36 -0.29 -3.34 15 11 C 0.16 3.33 6.95 -17.20 -0.12 3.21 15 12 N -0.52 -10.53 10.44 -14.58 -0.15 -10.68 15 13 C 0.26 4.57 12.29 -92.15 -1.13 3.44 15 14 N -0.53 -9.58 10.44 -14.58 -0.15 -9.73 15 15 C 0.13 2.28 9.46 -17.20 -0.16 2.11 15 16 C -0.15 -2.90 4.13 -24.99 -0.10 -3.00 15 17 C 0.05 0.79 7.64 38.11 0.29 1.09 15 18 O -0.37 -7.36 11.65 -35.23 -0.41 -7.77 15 19 C 0.07 1.36 6.66 37.93 0.25 1.62 15 20 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 21 H 0.19 4.19 5.78 -52.48 -0.30 3.89 15 22 H 0.19 2.50 8.06 -52.49 -0.42 2.08 15 23 H 0.16 2.44 7.76 -52.48 -0.41 2.03 15 24 H 0.06 1.13 5.56 -51.93 -0.29 0.84 15 25 H 0.08 1.78 6.72 -51.92 -0.35 1.43 15 26 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 28 H 0.09 1.77 7.68 -51.93 -0.40 1.37 15 29 H 0.04 0.66 7.43 -51.93 -0.39 0.27 15 LS Contribution 230.38 15.07 3.47 3.47 Total: -1.00 -28.50 230.38 -5.13 -33.62 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -3.15 Total: 3.86 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.69 Total: -4.69 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.47 Total: -44.24 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.41 Total: -7.77 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -3.83 Total: 15.75 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.50 -5.13 -33.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142523.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.762 kcal (2) G-P(sol) polarization free energy of solvation -28.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds