Wall clock time and date at job start Mon Mar 30 2020 02:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.35742 * 117.00205 * 2 1 4 4 C 1.39443 * 120.12229 * 270.02398 * 3 2 1 5 5 C 1.38878 * 119.01720 * 180.28460 * 4 3 2 6 6 C 1.38501 * 121.22094 * 359.46328 * 5 4 3 7 7 C 1.36514 * 120.58585 * 0.34083 * 6 5 4 8 8 C 1.40798 * 119.71055 * 0.08867 * 7 6 5 9 9 C 1.41174 * 120.14808 * 179.67409 * 8 7 6 10 10 H 1.08008 * 120.00025 * 204.90095 * 9 8 7 11 11 C 1.39922 * 120.00456 * 24.89937 * 9 8 7 12 12 N 1.30875 * 119.99520 * 17.77122 * 11 9 8 13 13 Si 1.86805 * 120.00179 * 197.77408 * 11 9 8 14 14 H 1.48501 * 109.46719 * 89.99916 * 13 11 9 15 15 H 1.48497 * 109.46774 * 209.99998 * 13 11 9 16 16 H 1.48492 * 109.46955 * 329.99854 * 13 11 9 17 17 C 1.51752 * 106.96664 * 179.44923 * 5 4 3 18 18 C 1.54682 * 101.96263 * 344.56961 * 17 5 4 19 19 O 1.36511 * 129.62321 * 0.73351 * 4 3 2 20 20 H 1.09000 * 109.47269 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47465 * 299.99571 * 1 2 3 22 22 H 1.09004 * 109.47652 * 59.99730 * 1 2 3 23 23 H 1.08001 * 119.70530 * 180.37081 * 6 5 4 24 24 H 1.07998 * 120.14519 * 180.10400 * 7 6 5 25 25 H 0.97005 * 119.99540 * 180.02562 * 12 11 9 26 26 H 1.09007 * 110.92902 * 226.41063 * 17 5 4 27 27 H 1.08997 * 110.97089 * 102.75676 * 17 5 4 28 28 H 1.09000 * 110.74199 * 143.69225 * 18 17 5 29 29 H 1.09001 * 110.75362 * 266.86517 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 2.3625 1.8332 -1.2061 5 6 2.9983 3.0676 -1.1794 6 6 3.3097 3.6889 0.0187 7 6 3.0031 3.0954 1.2092 8 6 2.3664 1.8396 1.2194 9 6 2.0513 1.2144 2.4453 10 1 1.9483 0.1403 2.4928 11 6 1.8725 1.9860 3.5987 12 7 1.6502 3.2718 3.4978 13 14 1.9511 1.1810 5.2825 14 1 3.3499 1.2100 5.7802 15 1 1.0745 1.9204 6.2260 16 1 1.4913 -0.2272 5.1798 17 6 3.2225 3.4816 -2.6220 18 6 2.9953 2.1506 -3.3765 19 8 2.1355 1.4185 -2.4868 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 3.7990 4.6517 0.0109 24 1 3.2477 3.5870 2.1392 25 1 1.5266 3.8068 4.2974 26 1 4.2399 3.8440 -2.7695 27 1 2.4951 4.2328 -2.9298 28 1 2.5014 2.3279 -4.3319 29 1 3.9382 1.6237 -3.5228 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261209295.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:04 Heat of formation + Delta-G solvation = -72.566776 kcal Electronic energy + Delta-G solvation = -14880.155647 eV Core-core repulsion = 12346.966960 eV Total energy + Delta-G solvation = -2533.188686 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.57092 -39.21881 -37.45996 -35.33819 -32.72616 -30.61334 -30.17937 -27.81909 -26.58821 -23.63260 -22.79174 -22.03764 -19.46791 -18.12709 -17.49016 -17.35422 -16.96198 -16.21267 -15.96287 -15.59586 -15.04859 -14.28772 -14.09837 -13.73915 -13.51425 -12.96129 -12.94075 -12.83455 -12.52246 -12.45758 -12.17187 -12.01218 -11.51947 -11.41765 -10.94318 -10.56476 -9.30822 -8.77500 -8.69330 -6.41216 0.75448 0.91514 1.38186 1.49630 1.51899 2.18498 2.54100 2.72566 3.17935 3.68160 3.88261 4.06910 4.29526 4.46316 4.52454 4.66821 4.68538 4.75939 4.78948 5.01739 5.03011 5.12043 5.26324 5.27731 5.69858 5.79357 5.97171 6.01445 6.37509 6.48243 6.71813 6.81997 7.23122 8.22854 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.038701 B = 0.009961 C = 0.008315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.312577 B = 2810.307572 C = 3366.739795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.341 6.341 3 C -0.078 4.078 4 C 0.095 3.905 5 C -0.294 4.294 6 C -0.061 4.061 7 C -0.197 4.197 8 C 0.096 3.904 9 C -0.472 4.472 10 H 0.074 0.926 11 C 0.039 3.961 12 N -0.811 5.811 13 Si 0.986 3.014 14 H -0.258 1.258 15 H -0.263 1.263 16 H -0.261 1.261 17 C -0.081 4.081 18 C 0.045 3.955 19 O -0.334 6.334 20 H 0.106 0.894 21 H 0.027 0.973 22 H 0.028 0.972 23 H 0.122 0.878 24 H 0.117 0.883 25 H 0.294 0.706 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 0.812 -4.711 4.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.258 6.258 3 C -0.123 4.123 4 C 0.051 3.949 5 C -0.296 4.296 6 C -0.080 4.080 7 C -0.216 4.216 8 C 0.093 3.907 9 C -0.500 4.500 10 H 0.092 0.908 11 C -0.178 4.178 12 N -0.436 5.436 13 Si 0.806 3.194 14 H -0.183 1.183 15 H -0.187 1.187 16 H -0.185 1.185 17 C -0.118 4.118 18 C -0.030 4.030 19 O -0.250 6.250 20 H 0.124 0.876 21 H 0.046 0.954 22 H 0.047 0.953 23 H 0.140 0.860 24 H 0.135 0.865 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.145 0.855 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.002 0.693 -4.681 4.837 hybrid contribution -0.261 0.068 0.741 0.789 sum 0.741 0.762 -3.940 4.081 Atomic orbital electron populations 1.22891 0.81288 1.02657 0.98884 1.85902 1.19457 1.26291 1.94146 1.18291 1.12328 0.92198 0.89516 1.19970 0.97716 0.93148 0.84113 1.20519 1.15798 0.97039 0.96240 1.19948 0.98505 0.98787 0.90735 1.20925 1.05223 0.98172 0.97325 1.17863 0.89489 0.91906 0.91481 1.19649 1.42374 0.95219 0.92760 0.90768 1.26811 0.90841 0.95058 1.05058 1.69875 1.32007 1.08073 1.33622 0.85136 0.79682 0.79255 0.75287 1.18257 1.18695 1.18532 1.21527 1.03421 0.97562 0.89296 1.24023 0.94634 0.90716 0.93584 1.86799 1.60181 1.63626 1.14373 0.87564 0.95430 0.95297 0.85982 0.86524 0.89522 0.88393 0.89965 0.85460 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 11.13 113.37 1.26 2.89 15 2 O -0.34 -17.97 9.68 -90.64 -0.88 -18.85 15 3 C -0.08 -4.29 5.78 23.23 0.13 -4.16 15 4 C 0.10 4.76 6.96 22.71 0.16 4.92 15 5 C -0.29 -13.16 6.29 -19.31 -0.12 -13.28 15 6 C -0.06 -2.85 9.95 21.93 0.22 -2.63 15 7 C -0.20 -10.41 8.65 22.49 0.19 -10.21 15 8 C 0.10 5.39 5.57 -21.26 -0.12 5.27 15 9 C -0.47 -26.02 8.70 23.40 0.20 -25.82 15 10 H 0.07 4.13 7.64 -2.91 -0.02 4.11 15 11 C 0.04 1.95 5.14 85.24 0.44 2.39 15 12 N -0.81 -41.21 10.97 21.83 0.24 -40.97 15 13 Si 0.99 37.74 29.60 68.60 2.03 39.77 15 14 H -0.26 -9.52 7.11 99.48 0.71 -8.81 15 15 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 16 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 17 C -0.08 -2.62 7.12 30.76 0.22 -2.40 15 18 C 0.04 1.39 8.00 72.56 0.58 1.97 15 19 O -0.33 -14.78 11.13 -99.43 -1.11 -15.88 15 20 H 0.11 3.73 8.14 -2.39 -0.02 3.71 15 21 H 0.03 1.24 8.14 -2.39 -0.02 1.22 15 22 H 0.03 1.21 8.14 -2.38 -0.02 1.19 15 23 H 0.12 4.80 8.06 -2.91 -0.02 4.78 15 24 H 0.12 6.25 6.16 -2.91 -0.02 6.23 15 25 H 0.29 13.28 8.30 -92.70 -0.77 12.52 15 26 H 0.10 2.62 8.14 -2.38 -0.02 2.60 15 27 H 0.08 2.41 8.14 -2.39 -0.02 2.39 15 28 H 0.13 2.94 8.14 -2.39 -0.02 2.92 15 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 15 Total: -1.00 -64.50 253.13 4.60 -59.89 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.15 Total: 17.09 kcal Atomic # 6 Polarization: -44.22 SS G_CDS: 3.17 Total: -41.05 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.24 Total: -40.97 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -1.98 Total: -34.73 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -64.50 4.60 -59.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261209295.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.673 kcal (2) G-P(sol) polarization free energy of solvation -64.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds