Wall clock time and date at job start Mon Mar 30 2020 02:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.64900 * 2 1 4 4 C 1.54671 * 110.72961 * 236.83028 * 2 1 3 5 5 C 1.51753 * 101.97089 * 216.16017 * 4 2 1 6 6 C 1.37934 * 131.82126 * 195.89607 * 5 4 2 7 7 C 1.38434 * 120.23906 * 179.71535 * 6 5 4 8 8 O 1.35686 * 120.32142 * 179.70881 * 7 6 5 9 9 C 1.41354 * 119.35618 * 359.44154 * 7 6 5 10 10 C 1.41145 * 120.13045 * 180.47878 * 9 7 6 11 11 H 1.07999 * 119.99761 * 331.38508 * 10 9 7 12 12 C 1.39915 * 119.99622 * 151.39193 * 10 9 7 13 13 N 1.30874 * 120.00008 * 161.19509 * 12 10 9 14 14 Si 1.86803 * 120.00159 * 341.18849 * 12 10 9 15 15 H 1.48503 * 109.46854 * 90.99565 * 14 12 10 16 16 H 1.48501 * 109.46921 * 210.99364 * 14 12 10 17 17 H 1.48500 * 109.47225 * 330.99652 * 14 12 10 18 18 C 1.40444 * 119.73090 * 0.49567 * 9 7 6 19 19 C 1.38494 * 120.12527 * 359.91094 * 18 9 7 20 20 O 1.36267 * 129.62072 * 179.10207 * 19 18 9 21 21 H 1.09004 * 109.47096 * 183.17257 * 1 2 3 22 22 H 1.09005 * 109.47194 * 303.16391 * 1 2 3 23 23 H 1.09000 * 109.47313 * 63.16741 * 1 2 3 24 24 H 1.09005 * 110.92807 * 97.99317 * 4 2 1 25 25 H 1.08992 * 110.93372 * 334.33719 * 4 2 1 26 26 H 1.08003 * 119.88212 * 359.46673 * 6 5 4 27 27 H 0.96701 * 114.00414 * 274.87679 * 8 7 6 28 28 H 0.97002 * 120.00478 * 179.97438 * 13 12 10 29 29 H 1.07998 * 119.93720 * 179.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0775 -0.7915 -1.2109 5 6 3.3098 -1.4536 -0.6229 6 6 4.3996 -2.0582 -1.2141 7 6 5.4111 -2.5897 -0.4326 8 8 6.4810 -3.1900 -1.0122 9 6 5.3212 -2.4960 0.9750 10 6 6.3480 -3.0234 1.7872 11 1 6.9354 -3.8604 1.4394 12 6 6.6047 -2.4621 3.0428 13 7 7.2735 -3.1418 3.9392 14 14 5.9929 -0.7423 3.4398 15 1 4.6429 -0.8264 4.0526 16 1 6.9289 -0.0914 4.3914 17 1 5.9207 0.0580 2.1910 18 6 4.2059 -1.8764 1.5620 19 6 3.1992 -1.3576 0.7647 20 8 2.0388 -0.7394 1.1226 21 1 -0.3633 -1.0261 0.0569 22 1 -0.3634 0.5622 0.8603 23 1 -0.3634 0.4639 -0.9170 24 1 2.3477 -0.1193 -2.0254 25 1 1.3571 -1.5374 -1.5464 26 1 4.4621 -2.1206 -2.2905 27 1 6.3403 -4.1223 -1.2273 28 1 7.4518 -2.7525 4.8096 29 1 4.1336 -1.8033 2.6370 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261216367.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:18 Heat of formation + Delta-G solvation = -64.056297 kcal Electronic energy + Delta-G solvation = -14738.231316 eV Core-core repulsion = 12205.411671 eV Total energy + Delta-G solvation = -2532.819644 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.14690 -37.61897 -34.86140 -33.53140 -32.45472 -30.65767 -28.08533 -27.20485 -23.88915 -21.73339 -21.02549 -20.39265 -17.75513 -17.03155 -16.18946 -16.08797 -14.74305 -14.58276 -14.18621 -13.63607 -13.26291 -12.81868 -12.63108 -12.46898 -12.03421 -11.82004 -11.54928 -11.49801 -10.99601 -10.71350 -10.66969 -10.40738 -9.90634 -9.80205 -9.33109 -8.89838 -7.75966 -7.05959 -7.00517 -4.54835 2.41004 2.50111 3.12564 3.18684 3.31235 3.94697 3.96923 4.32399 5.01192 5.08152 5.14366 5.32007 5.51959 5.67332 5.67976 5.86284 6.02543 6.04918 6.18139 6.30982 6.56769 6.64494 6.89798 7.06488 7.27306 7.38290 7.53931 7.75929 8.07883 8.27020 8.37931 8.67084 8.98778 9.95430 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.030169 B = 0.011440 C = 0.008771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.867983 B = 2446.970328 C = 3191.469085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 H 0.075 0.925 4 C -0.081 4.081 5 C -0.293 4.293 6 C -0.057 4.057 7 C -0.026 4.026 8 O -0.486 6.486 9 C 0.099 3.901 10 C -0.420 4.420 11 H 0.098 0.902 12 C 0.084 3.916 13 N -0.796 5.796 14 Si 0.915 3.085 15 H -0.265 1.265 16 H -0.289 1.289 17 H -0.247 1.247 18 C -0.252 4.252 19 C 0.136 3.864 20 O -0.316 6.316 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.356 0.644 28 H 0.288 0.712 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.170 4.230 -5.578 10.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.018 3.982 3 H 0.093 0.907 4 C -0.119 4.119 5 C -0.295 4.295 6 C -0.076 4.076 7 C -0.072 4.072 8 O -0.292 6.292 9 C 0.095 3.905 10 C -0.447 4.447 11 H 0.116 0.884 12 C -0.137 4.137 13 N -0.419 5.419 14 Si 0.742 3.258 15 H -0.191 1.191 16 H -0.217 1.217 17 H -0.170 1.170 18 C -0.272 4.272 19 C 0.092 3.908 20 O -0.231 6.231 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.120 0.880 27 H 0.208 0.792 28 H 0.099 0.901 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.865 4.724 -5.055 10.475 hybrid contribution -0.384 0.207 0.105 0.449 sum -8.250 4.931 -4.949 10.811 Atomic orbital electron populations 1.21845 0.93238 1.03013 1.02186 1.23190 0.94655 0.95344 0.85002 0.90728 1.21448 0.95376 0.98015 0.97019 1.19821 0.99671 1.16942 0.93045 1.20035 0.91696 0.98041 0.97857 1.18250 0.90690 1.08356 0.89870 1.84824 1.36876 1.26550 1.80937 1.17594 0.91560 0.89945 0.91433 1.19363 1.13379 1.14205 0.97725 0.88418 1.26234 0.92630 1.00226 0.94585 1.69705 1.29869 1.37420 1.04888 0.86288 0.78009 0.81782 0.79757 1.19148 1.21687 1.16994 1.20038 0.94512 1.14513 0.98145 1.19286 0.85384 0.93149 0.92973 1.86749 1.35970 1.63020 1.37350 0.91674 0.91959 0.90990 0.91226 0.91253 0.88016 0.79200 0.90122 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.58 37.16 0.36 -1.45 15 2 C 0.07 1.23 4.25 -25.85 -0.11 1.12 15 3 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 4 C -0.08 -1.37 6.64 -26.48 -0.18 -1.54 15 5 C -0.29 -6.33 6.28 -103.73 -0.65 -6.98 15 6 C -0.06 -1.25 9.95 -39.62 -0.39 -1.65 15 7 C -0.03 -0.64 6.75 -38.33 -0.26 -0.89 15 8 O -0.49 -10.81 12.84 -18.76 -0.24 -11.05 15 9 C 0.10 2.58 5.14 -106.78 -0.55 2.03 15 10 C -0.42 -11.49 9.20 -37.85 -0.35 -11.83 15 11 H 0.10 2.77 7.87 -52.49 -0.41 2.35 15 12 C 0.08 2.23 5.40 -17.33 -0.09 2.13 15 13 N -0.80 -21.12 13.93 55.55 0.77 -20.34 15 14 Si 0.92 21.61 24.55 -169.99 -4.17 17.43 15 15 H -0.27 -6.18 6.47 56.52 0.37 -5.81 15 16 H -0.29 -6.46 7.11 56.52 0.40 -6.06 15 17 H -0.25 -6.07 7.04 56.52 0.40 -5.67 15 18 C -0.25 -6.46 7.29 -38.66 -0.28 -6.74 15 19 C 0.14 3.23 7.01 -39.00 -0.27 2.96 15 20 O -0.32 -6.78 10.81 -20.59 -0.22 -7.01 15 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.07 0.70 8.14 -51.93 -0.42 0.27 15 24 H 0.07 1.03 8.14 -51.93 -0.42 0.60 15 25 H 0.07 1.07 7.92 -51.93 -0.41 0.65 15 26 H 0.10 1.94 8.06 -52.48 -0.42 1.52 15 27 H 0.36 6.21 9.06 45.56 0.41 6.62 15 28 H 0.29 6.90 8.30 -40.82 -0.34 6.56 15 29 H 0.11 2.86 4.46 -52.49 -0.23 2.63 15 LS Contribution 246.61 15.07 3.72 3.72 Total: -1.00 -29.71 246.61 -5.28 -34.99 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -2.36 Total: 5.11 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -2.78 Total: -22.85 kcal Atomic # 7 Polarization: -21.12 SS G_CDS: 0.77 Total: -20.34 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.46 Total: -18.06 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.17 Total: 17.43 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.71 -5.28 -34.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216367.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.066 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds