Wall clock time and date at job start Mon Mar 30 2020 02:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.64900 * 2 1 4 4 C 1.54671 * 110.72961 * 236.83028 * 2 1 3 5 5 C 1.51753 * 101.97089 * 216.16017 * 4 2 1 6 6 C 1.37934 * 131.82126 * 195.89607 * 5 4 2 7 7 C 1.38434 * 120.23906 * 179.71535 * 6 5 4 8 8 O 1.35686 * 120.32142 * 179.70881 * 7 6 5 9 9 C 1.41354 * 119.35618 * 359.44154 * 7 6 5 10 10 C 1.41145 * 120.13045 * 180.47878 * 9 7 6 11 11 H 1.07999 * 119.99761 * 331.38508 * 10 9 7 12 12 C 1.39915 * 119.99622 * 151.39193 * 10 9 7 13 13 N 1.30874 * 120.00008 * 161.19509 * 12 10 9 14 14 Si 1.86803 * 120.00159 * 341.18849 * 12 10 9 15 15 H 1.48503 * 109.46854 * 90.99565 * 14 12 10 16 16 H 1.48501 * 109.46921 * 210.99364 * 14 12 10 17 17 H 1.48500 * 109.47225 * 330.99652 * 14 12 10 18 18 C 1.40444 * 119.73090 * 0.49567 * 9 7 6 19 19 C 1.38494 * 120.12527 * 359.91094 * 18 9 7 20 20 O 1.36267 * 129.62072 * 179.10207 * 19 18 9 21 21 H 1.09004 * 109.47096 * 183.17257 * 1 2 3 22 22 H 1.09005 * 109.47194 * 303.16391 * 1 2 3 23 23 H 1.09000 * 109.47313 * 63.16741 * 1 2 3 24 24 H 1.09005 * 110.92807 * 97.99317 * 4 2 1 25 25 H 1.08992 * 110.93372 * 334.33719 * 4 2 1 26 26 H 1.08003 * 119.88212 * 359.46673 * 6 5 4 27 27 H 0.96701 * 114.00414 * 274.87679 * 8 7 6 28 28 H 0.97002 * 120.00478 * 179.97438 * 13 12 10 29 29 H 1.07998 * 119.93720 * 179.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0775 -0.7915 -1.2109 5 6 3.3098 -1.4536 -0.6229 6 6 4.3996 -2.0582 -1.2141 7 6 5.4111 -2.5897 -0.4326 8 8 6.4810 -3.1900 -1.0122 9 6 5.3212 -2.4960 0.9750 10 6 6.3480 -3.0234 1.7872 11 1 6.9354 -3.8604 1.4394 12 6 6.6047 -2.4621 3.0428 13 7 7.2735 -3.1418 3.9392 14 14 5.9929 -0.7423 3.4398 15 1 4.6429 -0.8264 4.0526 16 1 6.9289 -0.0914 4.3914 17 1 5.9207 0.0580 2.1910 18 6 4.2059 -1.8764 1.5620 19 6 3.1992 -1.3576 0.7647 20 8 2.0388 -0.7394 1.1226 21 1 -0.3633 -1.0261 0.0569 22 1 -0.3634 0.5622 0.8603 23 1 -0.3634 0.4639 -0.9170 24 1 2.3477 -0.1193 -2.0254 25 1 1.3571 -1.5374 -1.5464 26 1 4.4621 -2.1206 -2.2905 27 1 6.3403 -4.1223 -1.2273 28 1 7.4518 -2.7525 4.8096 29 1 4.1336 -1.8033 2.6370 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261216367.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:18 Heat of formation + Delta-G solvation = -85.529243 kcal Electronic energy + Delta-G solvation = -14739.162452 eV Core-core repulsion = 12205.411671 eV Total energy + Delta-G solvation = -2533.750781 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.77550 -39.38603 -36.67280 -35.40222 -33.90455 -32.31599 -29.81307 -28.79080 -25.59248 -23.44631 -22.49216 -22.14234 -19.57205 -18.83106 -17.97581 -17.64551 -16.47599 -16.24551 -15.99729 -15.29138 -15.03656 -14.49176 -13.97287 -13.80703 -13.65940 -13.31531 -13.19043 -13.02800 -12.80130 -12.36013 -12.21886 -11.95664 -11.77661 -11.58080 -11.08757 -10.71918 -9.61257 -9.01702 -8.80594 -6.55310 0.56532 0.65100 1.21053 1.30178 1.40058 2.05044 2.35069 2.56142 3.22279 3.60436 3.77222 3.96456 4.10205 4.19795 4.44314 4.60043 4.66562 4.78634 4.85763 4.90410 5.01186 5.19815 5.24184 5.29365 5.45437 5.65784 5.70882 5.89493 6.11994 6.40241 6.53689 6.68187 7.28035 8.05808 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.030169 B = 0.011440 C = 0.008771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.867983 B = 2446.970328 C = 3191.469085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.062 3.938 3 H 0.086 0.914 4 C -0.077 4.077 5 C -0.278 4.278 6 C -0.057 4.057 7 C -0.036 4.036 8 O -0.496 6.496 9 C 0.079 3.921 10 C -0.459 4.459 11 H 0.070 0.930 12 C 0.054 3.946 13 N -0.832 5.832 14 Si 0.963 3.037 15 H -0.265 1.265 16 H -0.268 1.268 17 H -0.264 1.264 18 C -0.271 4.271 19 C 0.120 3.880 20 O -0.333 6.333 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.107 0.893 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.138 0.862 27 H 0.379 0.621 28 H 0.297 0.703 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.498 5.907 -7.637 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.006 3.994 3 H 0.104 0.896 4 C -0.114 4.114 5 C -0.280 4.280 6 C -0.076 4.076 7 C -0.082 4.082 8 O -0.305 6.305 9 C 0.076 3.924 10 C -0.487 4.487 11 H 0.088 0.912 12 C -0.163 4.163 13 N -0.457 5.457 14 Si 0.787 3.213 15 H -0.191 1.191 16 H -0.194 1.194 17 H -0.189 1.189 18 C -0.291 4.291 19 C 0.075 3.925 20 O -0.249 6.249 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.126 0.874 24 H 0.119 0.881 25 H 0.110 0.890 26 H 0.156 0.844 27 H 0.233 0.767 28 H 0.108 0.892 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.200 6.393 -7.116 13.984 hybrid contribution 0.161 -0.291 0.520 0.617 sum -10.040 6.103 -6.596 13.474 Atomic orbital electron populations 1.21873 0.89925 1.03387 1.04362 1.23695 0.97248 0.95213 0.83207 0.89619 1.21624 0.93198 0.98778 0.97765 1.20523 1.00607 1.14200 0.92646 1.20352 0.90829 0.96869 0.99545 1.18487 0.91522 1.08636 0.89515 1.84734 1.36869 1.28285 1.80568 1.17777 0.91444 0.90546 0.92657 1.19300 1.14968 1.15196 0.99248 0.91150 1.26731 0.92805 1.02439 0.94326 1.69710 1.31747 1.38644 1.05627 0.85572 0.78059 0.78607 0.79048 1.19068 1.19365 1.18863 1.20078 0.95465 1.15560 0.98021 1.19461 0.85800 0.93344 0.93874 1.86746 1.34819 1.63272 1.40037 0.92021 0.91375 0.87445 0.88073 0.88994 0.84418 0.76690 0.89188 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.58 71.98 0.69 -2.09 15 2 C 0.06 1.78 4.25 31.16 0.13 1.91 15 3 H 0.09 2.28 8.14 -2.39 -0.02 2.26 15 4 C -0.08 -2.18 6.64 30.75 0.20 -1.98 15 5 C -0.28 -11.12 6.28 -19.29 -0.12 -11.24 15 6 C -0.06 -2.35 9.95 22.24 0.22 -2.13 15 7 C -0.04 -1.73 6.75 23.08 0.16 -1.57 15 8 O -0.50 -21.91 12.84 -90.04 -1.16 -23.07 15 9 C 0.08 4.24 5.14 -21.26 -0.11 4.13 15 10 C -0.46 -26.38 9.20 23.39 0.22 -26.17 15 11 H 0.07 4.27 7.87 -2.91 -0.02 4.24 15 12 C 0.05 2.97 5.40 85.24 0.46 3.43 15 13 N -0.83 -45.96 13.93 21.82 0.30 -45.66 15 14 Si 0.96 45.65 24.55 68.60 1.68 47.34 15 15 H -0.26 -12.33 6.47 99.48 0.64 -11.68 15 16 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 17 H -0.26 -13.11 7.04 99.48 0.70 -12.41 15 18 C -0.27 -14.05 7.29 22.87 0.17 -13.89 15 19 C 0.12 5.53 7.01 22.64 0.16 5.69 15 20 O -0.33 -13.60 10.81 -96.60 -1.04 -14.65 15 21 H 0.06 1.30 8.14 -2.38 -0.02 1.28 15 22 H 0.07 1.30 8.14 -2.38 -0.02 1.28 15 23 H 0.11 1.43 8.14 -2.39 -0.02 1.41 15 24 H 0.10 2.33 8.14 -2.38 -0.02 2.31 15 25 H 0.09 2.28 7.92 -2.39 -0.02 2.27 15 26 H 0.14 4.62 8.06 -2.91 -0.02 4.59 15 27 H 0.38 13.02 9.06 -74.06 -0.67 12.34 15 28 H 0.30 14.70 8.30 -92.71 -0.77 13.93 15 29 H 0.10 5.23 4.46 -2.91 -0.01 5.22 15 Total: -1.00 -66.12 246.61 2.40 -63.73 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.44 Total: 16.22 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 2.17 Total: -43.91 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.30 Total: -45.66 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -2.20 Total: -37.71 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.68 Total: 47.34 kcal Total: -66.12 2.40 -63.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216367.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.803 kcal (2) G-P(sol) polarization free energy of solvation -66.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds