Wall clock time and date at job start Mon Mar 30 2020 03:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30787 * 118.52866 * 2 1 4 4 C 1.32701 * 122.45057 * 180.02562 * 3 2 1 5 5 C 1.40511 * 119.28966 * 0.02562 * 4 3 2 6 6 C 1.40579 * 121.29080 * 180.02562 * 5 4 3 7 7 H 1.07997 * 120.00156 * 151.31839 * 6 5 4 8 8 C 1.40061 * 119.99842 * 331.32352 * 6 5 4 9 9 N 1.30838 * 120.00158 * 162.79282 * 8 6 5 10 10 Si 1.86803 * 120.00209 * 342.79656 * 8 6 5 11 11 H 1.48503 * 109.46992 * 90.22655 * 10 8 6 12 12 H 1.48500 * 109.47352 * 210.23247 * 10 8 6 13 13 H 1.48501 * 109.46620 * 330.23147 * 10 8 6 14 14 C 1.47641 * 117.42291 * 359.77284 * 5 4 3 15 15 O 1.21748 * 121.15368 * 180.26510 * 14 5 4 16 16 N 1.34652 * 118.52789 * 180.02562 * 2 1 3 17 17 C 1.46503 * 119.90460 * 359.95366 * 16 2 1 18 18 C 1.52997 * 117.49848 * 127.74270 * 17 16 2 19 19 C 1.53001 * 60.03184 * 107.50287 * 18 17 16 20 20 H 1.09002 * 109.47194 * 269.97540 * 1 2 3 21 21 H 1.09004 * 109.47088 * 29.97736 * 1 2 3 22 22 H 1.09000 * 109.46866 * 149.97402 * 1 2 3 23 23 H 1.08003 * 120.35080 * 180.02562 * 4 3 2 24 24 H 0.96996 * 120.00131 * 180.02562 * 9 8 6 25 25 H 1.09001 * 115.54085 * 342.07392 * 17 16 2 26 26 H 1.09007 * 117.49078 * 215.00780 * 18 17 16 27 27 H 1.09001 * 117.49977 * 359.97438 * 18 17 16 28 28 H 1.09000 * 117.49493 * 107.49602 * 19 18 17 29 29 H 1.08992 * 117.50038 * 252.52196 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1317 1.1491 0.0000 4 6 3.4556 1.2398 -0.0005 5 6 4.2252 0.0642 -0.0016 6 6 5.6302 0.1114 -0.0016 7 1 6.1974 -0.6910 0.4465 8 6 6.2944 1.1990 -0.5827 9 7 7.5520 1.4241 -0.3007 10 14 5.3847 2.3282 -1.7604 11 1 4.7622 3.4404 -0.9983 12 1 6.3404 2.8820 -2.7529 13 1 4.3280 1.5596 -2.4662 14 6 3.5012 -1.2225 0.0031 15 8 4.1004 -2.2823 0.0072 16 7 2.1501 -1.1830 -0.0005 17 6 1.3832 -2.4313 -0.0001 18 6 1.7204 -3.4680 -1.0735 19 6 2.1232 -3.7158 0.3816 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 3.9363 2.2070 -0.0001 24 1 8.0118 2.1776 -0.7029 25 1 0.3401 -2.3418 0.3034 26 1 0.8990 -4.0607 -1.4763 27 1 2.5126 -3.2212 -1.7804 28 1 1.5668 -4.4715 0.9360 29 1 3.1805 -3.6318 0.6324 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261217222.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:02 Heat of formation + Delta-G solvation = 13.705361 kcal Electronic energy + Delta-G solvation = -14997.646606 eV Core-core repulsion = 12500.491712 eV Total energy + Delta-G solvation = -2497.154895 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.29903 -38.62075 -37.85814 -35.99414 -34.13164 -32.70332 -30.56644 -26.16473 -25.73815 -23.40172 -23.06484 -22.60095 -19.80420 -19.12511 -17.75440 -17.18105 -16.87352 -16.65116 -15.63454 -15.35335 -14.79029 -14.49479 -14.41197 -14.11050 -13.82567 -13.30593 -13.00973 -12.84480 -12.74204 -12.42105 -12.33786 -11.85764 -11.45639 -11.37494 -10.56438 -10.39349 -10.23722 -9.32383 -9.14804 -6.50466 0.07218 1.08949 1.19506 1.35321 1.38765 1.78532 2.00193 2.31318 2.81883 3.26811 3.52693 3.68680 3.87200 3.93011 4.03934 4.27806 4.62428 4.73565 4.75996 4.87425 4.89829 5.00596 5.05679 5.20591 5.35312 5.39807 5.71120 5.88527 6.10125 6.31422 6.40602 7.15327 7.55644 7.91588 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.034741 B = 0.011424 C = 0.009347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.774737 B = 2450.372026 C = 2994.754650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.232 3.768 3 N -0.492 5.492 4 C -0.124 4.124 5 C -0.067 4.067 6 C -0.412 4.412 7 H 0.058 0.942 8 C 0.047 3.953 9 N -0.815 5.815 10 Si 0.980 3.020 11 H -0.248 1.248 12 H -0.263 1.263 13 H -0.270 1.270 14 C 0.494 3.506 15 O -0.571 6.571 16 N -0.486 5.486 17 C 0.034 3.966 18 C -0.171 4.171 19 C -0.198 4.198 20 H 0.097 0.903 21 H 0.091 0.909 22 H 0.100 0.900 23 H 0.136 0.864 24 H 0.306 0.694 25 H 0.189 0.811 26 H 0.145 0.855 27 H 0.058 0.942 28 H 0.130 0.870 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.422 -2.897 -1.795 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 N -0.209 5.209 4 C -0.264 4.264 5 C -0.076 4.076 6 C -0.441 4.441 7 H 0.076 0.924 8 C -0.172 4.172 9 N -0.439 5.439 10 Si 0.802 3.198 11 H -0.173 1.173 12 H -0.189 1.189 13 H -0.195 1.195 14 C 0.291 3.709 15 O -0.454 6.454 16 N -0.206 5.206 17 C -0.068 4.068 18 C -0.209 4.209 19 C -0.235 4.235 20 H 0.115 0.885 21 H 0.110 0.890 22 H 0.119 0.881 23 H 0.153 0.847 24 H 0.117 0.883 25 H 0.206 0.794 26 H 0.163 0.837 27 H 0.077 0.923 28 H 0.148 0.852 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.047 -2.598 -1.782 14.396 hybrid contribution 1.345 -0.252 -0.293 1.399 sum -12.702 -2.849 -2.075 13.182 Atomic orbital electron populations 1.20786 0.82875 1.05226 1.04830 1.22995 0.97427 0.79221 1.03166 1.67009 1.11194 1.24698 1.18033 1.22007 0.88542 0.96356 1.19457 1.20744 0.95067 0.91440 1.00302 1.19114 0.90338 1.04798 1.29818 0.92398 1.26936 0.95624 0.97437 0.97202 1.69637 1.11814 1.27062 1.35358 0.85287 0.77912 0.78405 0.78150 1.17277 1.18883 1.19497 1.19384 0.81922 0.90502 0.79083 1.90511 1.68644 1.31889 1.54390 1.45330 1.06247 1.08505 1.60470 1.22636 0.97847 0.79002 1.07356 1.23246 1.03755 1.01816 0.92091 1.23911 1.03769 0.97249 0.98620 0.88461 0.88989 0.88150 0.84733 0.88272 0.79447 0.83740 0.92308 0.85237 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.80 9.31 71.24 0.66 -1.14 15 2 C 0.23 8.79 7.57 138.17 1.05 9.84 15 3 N -0.49 -22.20 10.18 -184.73 -1.88 -24.08 15 4 C -0.12 -6.31 8.57 85.12 0.73 -5.58 15 5 C -0.07 -3.72 5.32 -19.67 -0.10 -3.82 15 6 C -0.41 -24.50 9.37 23.28 0.22 -24.28 15 7 H 0.06 3.80 8.03 -2.91 -0.02 3.78 15 8 C 0.05 2.53 5.44 85.28 0.46 3.00 15 9 N -0.81 -44.11 13.93 21.85 0.30 -43.80 15 10 Si 0.98 43.94 24.54 68.60 1.68 45.62 15 11 H -0.25 -10.47 6.47 99.48 0.64 -9.82 15 12 H -0.26 -10.59 7.11 99.48 0.71 -9.88 15 13 H -0.27 -12.91 7.00 99.48 0.70 -12.22 15 14 C 0.49 25.58 7.44 86.67 0.64 26.23 15 15 O -0.57 -31.43 12.75 -4.50 -0.06 -31.49 15 16 N -0.49 -19.77 2.94 -610.38 -1.79 -21.57 15 17 C 0.03 1.01 5.79 45.01 0.26 1.27 15 18 C -0.17 -4.85 9.90 30.59 0.30 -4.55 15 19 C -0.20 -6.11 9.64 30.62 0.30 -5.82 15 20 H 0.10 1.80 8.14 -2.39 -0.02 1.78 15 21 H 0.09 1.98 8.14 -2.38 -0.02 1.96 15 22 H 0.10 1.66 6.26 -2.39 -0.01 1.65 15 23 H 0.14 6.81 4.45 -2.91 -0.01 6.79 15 24 H 0.31 14.50 8.30 -92.71 -0.77 13.73 15 25 H 0.19 3.49 6.26 -2.39 -0.01 3.47 15 26 H 0.14 2.71 8.14 -2.38 -0.02 2.69 15 27 H 0.06 2.14 7.81 -2.39 -0.02 2.12 15 28 H 0.13 2.88 8.14 -2.39 -0.02 2.86 15 29 H 0.10 4.18 5.02 -15.00 -0.08 4.11 15 Total: -1.00 -70.98 241.97 3.82 -67.16 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.04 Total: 13.02 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 4.52 Total: -4.86 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -3.37 Total: -89.45 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.06 Total: -31.49 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.68 Total: 45.62 kcal Total: -70.98 3.82 -67.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217222.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.866 kcal (2) G-P(sol) polarization free energy of solvation -70.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds