Wall clock time and date at job start Mon Mar 30 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35961 * 116.99390 * 2 1 4 4 C 1.39419 * 120.00847 * 179.97438 * 3 2 1 5 5 C 1.37867 * 120.48971 * 180.02562 * 4 3 2 6 6 C 1.38592 * 120.97683 * 0.30120 * 5 4 3 7 7 C 1.41816 * 118.76138 * 359.39443 * 6 5 4 8 8 C 1.41139 * 120.11346 * 180.53729 * 7 6 5 9 9 H 1.07998 * 120.00582 * 24.86864 * 8 7 6 10 10 C 1.39925 * 119.99757 * 204.86574 * 8 7 6 11 11 N 1.30874 * 119.99872 * 17.97334 * 10 8 7 12 12 Si 1.86798 * 119.99949 * 197.97570 * 10 8 7 13 13 H 1.48500 * 109.47424 * 59.99865 * 12 10 8 14 14 H 1.48502 * 109.47080 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47034 * 299.99699 * 12 10 8 16 16 C 1.37891 * 120.01386 * 359.97186 * 3 2 1 17 17 O 1.36160 * 111.45370 * 179.03591 * 6 5 4 18 18 C 1.43784 * 109.10554 * 18.76930 * 17 6 5 19 19 C 1.51705 * 132.00810 * 180.30758 * 5 4 3 20 20 H 1.08996 * 109.47065 * 299.99983 * 1 2 3 21 21 H 1.09001 * 109.46891 * 60.00361 * 1 2 3 22 22 H 1.09004 * 109.46511 * 180.02562 * 1 2 3 23 23 H 1.08002 * 119.75441 * 0.05911 * 4 3 2 24 24 H 0.97003 * 119.99475 * 180.02562 * 11 10 8 25 25 H 1.07998 * 119.98761 * 359.90686 * 16 3 2 26 26 H 1.08994 * 110.75874 * 214.13785 * 18 17 6 27 27 H 1.08996 * 110.75843 * 90.93843 * 18 17 6 28 28 H 1.08993 * 110.94734 * 46.50861 * 19 5 4 29 29 H 1.09005 * 110.97475 * 282.82279 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4384 1.2848 0.0005 5 6 4.0745 2.5080 0.0011 6 6 3.3494 3.6890 0.0073 7 6 1.9329 3.6202 0.0001 8 6 1.1663 4.8052 -0.0053 9 1 1.5875 5.7191 -0.3975 10 6 -0.1394 4.7960 0.4976 11 7 -0.5329 3.8227 1.2789 12 14 -1.3210 6.1730 0.0535 13 1 -1.5041 6.2124 -1.4196 14 1 -2.6316 5.9311 0.7084 15 1 -0.7667 7.4700 0.5183 16 6 1.2953 2.3680 -0.0006 17 8 4.1687 4.7763 0.0280 18 6 5.4836 4.3830 -0.4005 19 6 5.5430 2.8887 -0.0043 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 4.0230 0.3767 0.0000 24 1 -1.4382 3.8162 1.6272 25 1 0.2168 2.3114 -0.0026 26 1 6.2484 4.9532 0.1268 27 1 5.5901 4.5014 -1.4787 28 1 6.0927 2.3103 -0.7468 29 1 5.9817 2.7652 0.9859 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261243140.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:14 Heat of formation + Delta-G solvation = -71.717313 kcal Electronic energy + Delta-G solvation = -14796.740188 eV Core-core repulsion = 12263.588337 eV Total energy + Delta-G solvation = -2533.151851 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.44245 -39.88301 -37.10094 -35.39882 -32.96550 -30.80301 -29.35481 -28.32996 -26.77087 -23.97682 -22.36746 -22.03968 -19.22999 -18.08305 -17.89609 -17.29265 -16.75952 -16.48553 -16.30530 -15.56593 -14.75456 -14.13896 -14.07216 -13.63985 -13.57943 -13.17531 -13.01993 -12.90779 -12.58037 -12.25825 -12.22351 -12.12479 -12.07346 -11.21862 -11.12510 -10.67454 -9.42146 -8.76581 -8.31509 -6.35248 0.84118 0.96878 1.36009 1.47034 1.50994 2.19310 2.58734 2.63234 2.98784 3.52563 3.83747 4.12418 4.31222 4.43635 4.48518 4.49282 4.65641 4.73092 4.81035 4.97992 4.98900 5.03467 5.17131 5.37413 5.63850 5.72726 5.88704 6.10764 6.26759 6.61850 6.68921 6.82924 7.08458 8.28298 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.013243 C = 0.008473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.682164 B = 2113.868862 C = 3303.744044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.338 6.338 3 C 0.107 3.893 4 C -0.229 4.229 5 C -0.125 4.125 6 C -0.063 4.063 7 C 0.099 3.901 8 C -0.489 4.489 9 H 0.069 0.931 10 C 0.037 3.963 11 N -0.820 5.820 12 Si 0.983 3.017 13 H -0.260 1.260 14 H -0.261 1.261 15 H -0.263 1.263 16 C -0.248 4.248 17 O -0.335 6.335 18 C 0.044 3.956 19 C -0.095 4.095 20 H 0.042 0.958 21 H 0.044 0.956 22 H 0.127 0.873 23 H 0.122 0.878 24 H 0.291 0.709 25 H 0.131 0.869 26 H 0.123 0.877 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 -2.216 -2.372 4.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.253 6.253 3 C 0.063 3.937 4 C -0.249 4.249 5 C -0.126 4.126 6 C -0.107 4.107 7 C 0.096 3.904 8 C -0.518 4.518 9 H 0.087 0.913 10 C -0.178 4.178 11 N -0.445 5.445 12 Si 0.804 3.196 13 H -0.184 1.184 14 H -0.184 1.184 15 H -0.187 1.187 16 C -0.269 4.269 17 O -0.251 6.251 18 C -0.031 4.031 19 C -0.132 4.132 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.145 0.855 23 H 0.140 0.860 24 H 0.102 0.898 25 H 0.148 0.852 26 H 0.141 0.859 27 H 0.091 0.909 28 H 0.125 0.875 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.809 -2.267 -2.159 4.206 hybrid contribution -0.758 0.591 -0.027 0.961 sum 2.051 -1.676 -2.186 3.434 Atomic orbital electron populations 1.23039 0.77875 1.04280 1.00895 1.85860 1.22284 1.27367 1.89796 1.18852 0.92279 0.83898 0.98688 1.19001 0.90508 0.96349 1.19036 1.20552 0.96241 0.92349 1.03487 1.19965 0.91725 0.85739 1.13293 1.17137 0.88015 0.94190 0.91084 1.19602 0.98630 0.96278 1.37302 0.91292 1.26755 0.99666 0.99720 0.91680 1.69874 1.19752 1.32667 1.22247 0.85240 0.76753 0.77885 0.79763 1.18388 1.18440 1.18737 1.21100 0.99934 0.90361 1.15473 1.86686 1.21300 1.32811 1.84290 1.23952 0.83691 0.94897 1.00545 1.21757 0.91507 0.96138 1.03750 0.93899 0.93745 0.85532 0.86013 0.89837 0.85189 0.85894 0.90908 0.87525 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.22 9.81 113.37 1.11 2.33 15 2 O -0.34 -14.91 10.50 -93.11 -0.98 -15.89 15 3 C 0.11 5.36 6.69 22.47 0.15 5.51 15 4 C -0.23 -10.77 9.98 22.47 0.22 -10.55 15 5 C -0.13 -5.79 6.26 -19.55 -0.12 -5.92 15 6 C -0.06 -3.36 6.82 23.24 0.16 -3.20 15 7 C 0.10 5.68 5.59 -21.13 -0.12 5.56 15 8 C -0.49 -27.96 9.00 23.39 0.21 -27.75 15 9 H 0.07 3.95 7.91 -2.91 -0.02 3.93 15 10 C 0.04 1.91 5.13 85.24 0.44 2.35 15 11 N -0.82 -42.95 10.97 21.83 0.24 -42.71 15 12 Si 0.98 38.99 29.60 68.60 2.03 41.02 15 13 H -0.26 -10.05 7.11 99.48 0.71 -9.35 15 14 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 15 H -0.26 -10.29 7.11 99.48 0.71 -9.59 15 16 C -0.25 -13.54 7.66 22.74 0.17 -13.36 15 17 O -0.33 -16.28 11.06 -95.37 -1.06 -17.34 15 18 C 0.04 1.49 8.00 72.56 0.58 2.07 15 19 C -0.09 -3.19 7.12 30.75 0.22 -2.97 15 20 H 0.04 1.65 7.66 -2.39 -0.02 1.63 15 21 H 0.04 1.59 7.65 -2.39 -0.02 1.57 15 22 H 0.13 3.32 8.14 -2.38 -0.02 3.30 15 23 H 0.12 5.03 8.06 -2.91 -0.02 5.01 15 24 H 0.29 13.60 8.30 -92.71 -0.77 12.83 15 25 H 0.13 7.05 4.36 -2.91 -0.01 7.04 15 26 H 0.12 3.20 8.14 -2.39 -0.02 3.18 15 27 H 0.07 2.23 8.14 -2.39 -0.02 2.21 15 28 H 0.11 2.90 8.14 -2.39 -0.02 2.88 15 29 H 0.09 2.83 8.14 -2.38 -0.02 2.81 15 Total: -1.00 -66.56 250.15 4.42 -62.14 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 1.16 Total: 18.69 kcal Atomic # 6 Polarization: -48.95 SS G_CDS: 3.03 Total: -45.93 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.24 Total: -42.71 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -2.03 Total: -33.22 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -66.56 4.42 -62.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243140.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.577 kcal (2) G-P(sol) polarization free energy of solvation -66.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds