Wall clock time and date at job start Mon Mar 30 2020 02:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86795 * 120.00134 * 2 1 4 4 H 1.48495 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47155 * 299.99967 * 3 2 1 6 6 H 1.48502 * 109.47367 * 59.99951 * 3 2 1 7 7 C 1.40017 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.39923 * 120.00191 * 359.97438 * 7 2 1 10 10 C 1.40023 * 126.14915 * 359.69293 * 9 7 2 11 11 C 1.38394 * 106.71862 * 180.26135 * 10 9 7 12 12 C 1.37748 * 108.72163 * 0.25317 * 11 10 9 13 13 N 1.36133 * 108.20918 * 359.58385 * 12 11 10 14 14 H 0.97000 * 125.68039 * 180.41560 * 13 12 11 15 15 C 1.50508 * 124.06104 * 179.07867 * 12 11 10 16 16 C 1.53884 * 109.47209 * 287.74462 * 15 12 11 17 17 C 1.53291 * 108.43023 * 41.35829 * 16 15 12 18 18 C 1.49594 * 112.93412 * 43.21471 * 17 16 15 19 19 O 1.21300 * 120.16464 * 93.30206 * 18 17 16 20 20 N 1.35239 * 119.66898 * 273.32760 * 18 17 16 21 21 H 0.96998 * 120.00267 * 359.97438 * 1 2 3 22 22 H 1.07993 * 126.64336 * 0.22825 * 10 9 7 23 23 H 1.08994 * 109.47242 * 47.74232 * 15 12 11 24 24 H 1.08998 * 109.46746 * 167.74716 * 15 12 11 25 25 H 1.09000 * 109.64378 * 281.67931 * 16 15 12 26 26 H 1.08998 * 109.82471 * 161.14729 * 16 15 12 27 27 H 1.09006 * 108.78982 * 282.32029 * 17 16 15 28 28 H 1.09005 * 108.70068 * 164.04473 * 17 16 15 29 29 H 0.97006 * 122.19776 * 193.92449 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7028 1.3463 -0.0006 5 1 1.8841 2.3964 -1.2126 6 1 1.8842 2.3964 1.2125 7 6 2.0089 -1.2126 -0.0005 8 1 3.0890 -1.2126 -0.0010 9 6 1.3093 -2.4244 -0.0005 10 6 -0.0829 -2.5744 0.0060 11 6 -0.3367 -3.9348 0.0094 12 6 0.8646 -4.6087 0.0108 13 7 1.8683 -3.6891 -0.0010 14 1 2.8177 -3.8878 -0.0086 15 6 0.9899 -6.1084 0.0345 16 6 0.6031 -6.6335 1.4283 17 6 -0.6264 -5.8578 1.9144 18 6 -1.6597 -5.6755 0.8481 19 8 -2.5697 -6.4702 0.7389 20 7 -1.5740 -4.6207 0.0062 21 1 -0.4850 0.8400 0.0004 22 1 -0.8165 -1.7819 0.0086 23 1 0.3254 -6.5404 -0.7137 24 1 2.0191 -6.3905 -0.1873 25 1 1.4308 -6.4794 2.1206 26 1 0.3668 -7.6960 1.3706 27 1 -0.3065 -4.8765 2.2648 28 1 -1.0739 -6.3989 2.7481 29 1 -2.3125 -4.3518 -0.5624 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261246553.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:00 Heat of formation + Delta-G solvation = -11.004825 kcal Electronic energy + Delta-G solvation = -14807.784634 eV Core-core repulsion = 12309.558225 eV Total energy + Delta-G solvation = -2498.226409 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.18589 -38.30066 -34.76653 -33.48568 -33.28040 -28.89535 -28.35093 -27.09763 -24.12620 -22.17231 -19.73560 -19.52807 -18.42602 -17.16664 -16.50316 -15.61404 -14.88761 -14.60136 -14.29843 -13.87779 -13.34145 -12.55184 -12.34917 -12.25927 -11.97001 -11.69513 -11.31889 -11.14462 -10.95877 -10.58804 -10.46765 -10.26666 -9.90101 -9.50823 -9.28011 -8.97962 -6.97467 -6.75222 -6.58246 -4.24072 2.90216 3.02837 3.07537 3.11282 3.62892 3.90725 4.08262 4.38596 4.79472 5.26265 5.35608 5.36329 5.40989 5.78558 5.99964 6.09429 6.20037 6.31571 6.51149 6.52361 6.96359 7.07878 7.42589 7.50564 7.73484 8.07393 8.10018 8.19392 8.73582 8.80010 9.02047 9.08871 9.30274 10.29445 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.051027 B = 0.008040 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.596943 B = 3481.846296 C = 3831.197560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.073 3.927 3 Si 0.922 3.078 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.453 4.453 8 H 0.072 0.928 9 C 0.227 3.773 10 C -0.280 4.280 11 C 0.065 3.935 12 C -0.122 4.122 13 N -0.580 5.580 14 H 0.394 0.606 15 C -0.032 4.032 16 C -0.099 4.099 17 C -0.136 4.136 18 C 0.526 3.474 19 O -0.574 6.574 20 N -0.645 5.645 21 H 0.275 0.725 22 H 0.160 0.840 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.105 -4.004 1.482 5.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.143 4.143 3 Si 0.747 3.253 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.488 4.488 8 H 0.090 0.910 9 C 0.115 3.885 10 C -0.304 4.304 11 C -0.035 4.035 12 C -0.231 4.231 13 N -0.182 5.182 14 H 0.228 0.772 15 C -0.070 4.070 16 C -0.138 4.138 17 C -0.177 4.177 18 C 0.315 3.685 19 O -0.454 6.454 20 N -0.292 5.292 21 H 0.087 0.913 22 H 0.177 0.823 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.625 -4.400 1.531 5.348 hybrid contribution 0.542 0.922 -0.247 1.097 sum 3.167 -3.479 1.284 4.876 Atomic orbital electron populations 1.69748 1.07204 1.28094 1.37581 1.25616 0.94840 1.00705 0.93174 0.86048 0.80143 0.80721 0.78416 1.18868 1.20032 1.20017 1.18456 0.93933 0.88795 1.47612 0.91018 1.18062 0.91088 0.82334 0.97042 1.21339 0.95158 0.92149 1.21800 1.17225 0.81974 0.92509 1.11796 1.19458 0.87725 0.89580 1.26330 1.41637 1.06108 1.05822 1.64661 0.77172 1.19855 1.00505 0.90696 0.95975 1.21760 0.96040 0.98457 0.97512 1.21420 0.95707 1.03499 0.97031 1.20489 0.85973 0.80266 0.81759 1.90640 1.37816 1.43581 1.73369 1.43395 1.14904 1.30054 1.40807 0.91347 0.82312 0.92077 0.92473 0.91280 0.91925 0.88939 0.90114 0.76032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.05 10.24 55.55 0.57 -19.48 15 2 C 0.07 1.77 5.50 -17.29 -0.10 1.67 15 3 Si 0.92 18.18 29.56 -169.99 -5.03 13.15 15 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 5 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 6 H -0.27 -5.38 7.11 56.52 0.40 -4.97 15 7 C -0.45 -11.29 9.44 -38.28 -0.36 -11.65 15 8 H 0.07 1.68 7.85 -52.48 -0.41 1.27 15 9 C 0.23 5.66 6.89 -83.66 -0.58 5.08 15 10 C -0.28 -7.14 9.78 -38.86 -0.38 -7.52 15 11 C 0.06 1.47 5.73 -83.53 -0.48 0.99 15 12 C -0.12 -2.55 6.07 -80.96 -0.49 -3.04 15 13 N -0.58 -12.41 6.15 -6.22 -0.04 -12.44 15 14 H 0.39 7.21 8.96 -40.82 -0.37 6.84 15 15 C -0.03 -0.55 5.67 -27.52 -0.16 -0.70 15 16 C -0.10 -1.53 6.32 -26.12 -0.16 -1.69 15 17 C -0.14 -2.40 5.18 -28.26 -0.15 -2.54 15 18 C 0.53 10.71 6.54 -11.31 -0.07 10.64 15 19 O -0.57 -12.94 17.95 5.54 0.10 -12.84 15 20 N -0.65 -13.35 5.74 -10.10 -0.06 -13.41 15 21 H 0.28 6.33 8.30 -40.82 -0.34 5.99 15 22 H 0.16 4.30 5.70 -52.49 -0.30 4.00 15 23 H 0.06 1.09 7.86 -51.93 -0.41 0.69 15 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.07 0.96 8.14 -51.93 -0.42 0.53 15 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15 27 H 0.09 1.75 7.01 -51.93 -0.36 1.39 15 28 H 0.08 1.27 8.14 -51.93 -0.42 0.84 15 29 H 0.40 7.75 8.96 -40.82 -0.37 7.39 15 LS Contribution 245.28 15.07 3.70 3.70 Total: -1.00 -28.25 245.28 -6.72 -34.97 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -3.04 Total: 15.13 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.92 Total: -8.77 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.47 Total: -45.33 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.10 Total: -12.84 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.25 -6.72 -34.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261246553.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.961 kcal (2) G-P(sol) polarization free energy of solvation -28.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds