Wall clock time and date at job start Mon Mar 30 2020 02:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.68688 * 2 1 4 4 C 1.54726 * 110.77410 * 236.71655 * 2 1 3 5 5 C 1.51590 * 101.89881 * 216.31740 * 4 2 1 6 6 C 1.38051 * 107.17551 * 15.60232 * 5 4 2 7 7 C 1.40407 * 118.85661 * 180.67900 * 6 5 4 8 8 O 1.35733 * 119.68312 * 179.64998 * 7 6 5 9 9 C 1.39175 * 120.56245 * 359.69303 * 7 6 5 10 10 C 1.36462 * 120.71787 * 359.92348 * 9 7 6 11 11 C 1.40346 * 132.20496 * 195.65340 * 5 4 2 12 12 C 1.41197 * 120.20818 * 359.33596 * 11 5 4 13 13 H 1.08003 * 120.00002 * 334.62061 * 12 11 5 14 14 C 1.39875 * 120.00118 * 154.61657 * 12 11 5 15 15 N 1.30894 * 120.00088 * 342.97223 * 14 12 11 16 16 Si 1.86797 * 120.00074 * 162.97254 * 14 12 11 17 17 H 1.48502 * 109.47175 * 90.00306 * 16 14 12 18 18 H 1.48505 * 109.47097 * 210.00066 * 16 14 12 19 19 H 1.48502 * 109.46916 * 330.00223 * 16 14 12 20 20 O 1.36228 * 111.36807 * 0.67659 * 6 5 4 21 21 H 1.08999 * 109.46891 * 183.28253 * 1 2 3 22 22 H 1.09002 * 109.47033 * 303.27444 * 1 2 3 23 23 H 1.08992 * 109.47101 * 63.28293 * 1 2 3 24 24 H 1.08997 * 110.94859 * 334.48299 * 4 2 1 25 25 H 1.09004 * 110.94944 * 98.15649 * 4 2 1 26 26 H 0.96700 * 114.00383 * 90.00070 * 8 7 6 27 27 H 1.07998 * 119.62524 * 179.91807 * 9 7 6 28 28 H 1.07992 * 120.17210 * 180.15057 * 10 9 7 29 29 H 0.96996 * 120.00158 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0788 -0.7939 -1.2094 5 6 3.3072 -1.4560 -0.6172 6 6 3.1975 -1.3647 0.7560 7 6 4.2238 -1.8945 1.5544 8 8 4.1366 -1.8075 2.9062 9 6 5.3294 -2.5068 0.9716 10 6 5.4369 -2.6056 -0.3852 11 6 4.4184 -2.0794 -1.2056 12 6 4.5156 -2.1793 -2.6107 13 1 3.6210 -2.1701 -3.2159 14 6 5.7703 -2.2900 -3.2190 15 7 6.8510 -1.9721 -2.5525 16 14 5.9036 -2.8915 -4.9824 17 1 5.8334 -1.7320 -5.9076 18 1 7.1976 -3.5958 -5.1687 19 1 4.7856 -3.8249 -5.2728 20 8 2.0438 -0.7391 1.1212 21 1 -0.3633 -1.0260 0.0588 22 1 -0.3633 0.5638 0.8592 23 1 -0.3633 0.4620 -0.9179 24 1 1.3582 -1.5392 -1.5457 25 1 2.3521 -0.1234 -2.0242 26 1 3.6922 -2.5596 3.3209 27 1 6.1106 -2.9079 1.6002 28 1 6.2975 -3.0846 -0.8280 29 1 7.7211 -2.0493 -2.9741 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261278779.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:01 Heat of formation + Delta-G solvation = -66.377144 kcal Electronic energy + Delta-G solvation = -14728.364149 eV Core-core repulsion = 12195.443865 eV Total energy + Delta-G solvation = -2532.920284 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.95118 -37.07139 -35.65355 -33.14150 -31.97760 -30.01091 -28.57558 -25.98232 -24.48684 -21.31914 -20.75572 -20.21036 -17.54526 -16.97545 -16.09378 -15.65105 -15.01073 -14.31177 -14.14651 -13.46146 -12.98572 -12.56036 -12.24983 -12.13830 -11.81701 -11.70609 -11.39166 -11.24936 -11.03591 -10.78255 -10.35912 -10.27162 -9.90348 -9.74673 -9.39614 -9.04041 -7.40620 -6.93418 -6.83719 -4.47513 2.59135 2.84632 3.00465 3.02616 3.09469 3.83183 4.14713 4.44885 5.20287 5.35667 5.43304 5.51263 5.69303 5.83309 5.95344 6.17550 6.26965 6.35395 6.57719 6.64062 6.89439 6.92124 7.01385 7.21511 7.49058 7.72310 7.84232 7.97072 8.16072 8.42193 8.65601 8.74405 9.00777 10.04584 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.029712 B = 0.010289 C = 0.007875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.142241 B = 2720.627455 C = 3554.860913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 H 0.072 0.928 4 C -0.077 4.077 5 C -0.273 4.273 6 C 0.107 3.893 7 C -0.053 4.053 8 O -0.496 6.496 9 C -0.093 4.093 10 C -0.169 4.169 11 C 0.148 3.852 12 C -0.452 4.452 13 H 0.080 0.920 14 C 0.076 3.924 15 N -0.786 5.786 16 Si 0.910 3.090 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.260 1.260 20 O -0.314 6.314 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.350 0.650 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.376 -0.064 -0.109 5.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.090 0.910 4 C -0.114 4.114 5 C -0.276 4.276 6 C 0.062 3.938 7 C -0.099 4.099 8 O -0.302 6.302 9 C -0.112 4.112 10 C -0.188 4.188 11 C 0.145 3.855 12 C -0.480 4.480 13 H 0.098 0.902 14 C -0.143 4.143 15 N -0.410 5.410 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.183 1.183 20 O -0.229 6.229 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.201 0.799 27 H 0.122 0.878 28 H 0.144 0.856 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.930 0.522 -0.026 4.958 hybrid contribution -0.006 -0.603 -0.862 1.052 sum -4.936 -0.082 -0.887 5.016 Atomic orbital electron populations 1.21823 0.93512 1.02743 1.01989 1.23228 0.94308 0.95400 0.85460 0.90963 1.21370 0.95235 0.97949 0.96879 1.20351 1.01299 1.14073 0.91865 1.19714 0.85332 0.95362 0.93402 1.17374 0.95593 1.16126 0.80762 1.84887 1.80793 1.46710 1.17808 1.20454 0.95897 0.99227 0.95578 1.20945 1.01691 1.04945 0.91211 1.16884 0.88592 0.86630 0.93418 1.19530 0.93167 1.43438 0.91909 0.90175 1.25974 0.95279 0.92385 1.00687 1.69852 0.99594 1.32958 1.38609 0.86276 0.78867 0.79868 0.81575 1.19366 1.19931 1.18333 1.86713 1.36203 1.62800 1.37218 0.91878 0.92227 0.91040 0.91655 0.90872 0.79894 0.87833 0.85558 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.60 37.16 0.36 -1.68 15 2 C 0.07 1.36 4.26 -25.82 -0.11 1.25 15 3 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 4 C -0.08 -1.58 6.41 -26.54 -0.17 -1.76 15 5 C -0.27 -6.82 6.13 -103.46 -0.63 -7.45 15 6 C 0.11 2.66 6.98 -38.83 -0.27 2.38 15 7 C -0.05 -1.31 6.76 -38.42 -0.26 -1.57 15 8 O -0.50 -11.06 13.48 -18.92 -0.26 -11.32 15 9 C -0.09 -2.25 9.88 -39.87 -0.39 -2.64 15 10 C -0.17 -4.35 8.65 -39.19 -0.34 -4.69 15 11 C 0.15 3.90 5.56 -106.95 -0.59 3.30 15 12 C -0.45 -11.58 8.87 -37.85 -0.34 -11.92 15 13 H 0.08 1.97 7.88 -52.48 -0.41 1.55 15 14 C 0.08 1.83 5.15 -17.34 -0.09 1.74 15 15 N -0.79 -19.66 10.96 55.54 0.61 -19.05 15 16 Si 0.91 17.90 29.59 -169.99 -5.03 12.87 15 17 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 19 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 20 O -0.31 -7.16 10.82 -20.48 -0.22 -7.38 15 21 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.07 1.25 7.93 -51.93 -0.41 0.84 15 25 H 0.07 1.44 8.14 -51.93 -0.42 1.02 15 26 H 0.35 6.09 9.06 45.56 0.41 6.50 15 27 H 0.10 2.25 8.06 -52.49 -0.42 1.83 15 28 H 0.13 3.28 6.19 -52.49 -0.33 2.96 15 29 H 0.28 6.41 8.30 -40.82 -0.34 6.07 15 LS Contribution 252.55 15.07 3.81 3.81 Total: -1.00 -29.21 252.55 -6.34 -35.55 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -2.41 Total: 8.55 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -2.84 Total: -23.03 kcal Atomic # 7 Polarization: -19.66 SS G_CDS: 0.61 Total: -19.05 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.48 Total: -18.70 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.21 -6.34 -35.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278779.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.823 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds