Wall clock time and date at job start Mon Mar 30 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.68688 * 2 1 4 4 C 1.54726 * 110.77410 * 236.71655 * 2 1 3 5 5 C 1.51590 * 101.89881 * 216.31740 * 4 2 1 6 6 C 1.38051 * 107.17551 * 15.60232 * 5 4 2 7 7 C 1.40407 * 118.85661 * 180.67900 * 6 5 4 8 8 O 1.35733 * 119.68312 * 179.64998 * 7 6 5 9 9 C 1.39175 * 120.56245 * 359.69303 * 7 6 5 10 10 C 1.36462 * 120.71787 * 359.92348 * 9 7 6 11 11 C 1.40346 * 132.20496 * 195.65340 * 5 4 2 12 12 C 1.41197 * 120.20818 * 359.33596 * 11 5 4 13 13 H 1.08003 * 120.00002 * 334.62061 * 12 11 5 14 14 C 1.39875 * 120.00118 * 154.61657 * 12 11 5 15 15 N 1.30894 * 120.00088 * 342.97223 * 14 12 11 16 16 Si 1.86797 * 120.00074 * 162.97254 * 14 12 11 17 17 H 1.48502 * 109.47175 * 90.00306 * 16 14 12 18 18 H 1.48505 * 109.47097 * 210.00066 * 16 14 12 19 19 H 1.48502 * 109.46916 * 330.00223 * 16 14 12 20 20 O 1.36228 * 111.36807 * 0.67659 * 6 5 4 21 21 H 1.08999 * 109.46891 * 183.28253 * 1 2 3 22 22 H 1.09002 * 109.47033 * 303.27444 * 1 2 3 23 23 H 1.08992 * 109.47101 * 63.28293 * 1 2 3 24 24 H 1.08997 * 110.94859 * 334.48299 * 4 2 1 25 25 H 1.09004 * 110.94944 * 98.15649 * 4 2 1 26 26 H 0.96700 * 114.00383 * 90.00070 * 8 7 6 27 27 H 1.07998 * 119.62524 * 179.91807 * 9 7 6 28 28 H 1.07992 * 120.17210 * 180.15057 * 10 9 7 29 29 H 0.96996 * 120.00158 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0788 -0.7939 -1.2094 5 6 3.3072 -1.4560 -0.6172 6 6 3.1975 -1.3647 0.7560 7 6 4.2238 -1.8945 1.5544 8 8 4.1366 -1.8075 2.9062 9 6 5.3294 -2.5068 0.9716 10 6 5.4369 -2.6056 -0.3852 11 6 4.4184 -2.0794 -1.2056 12 6 4.5156 -2.1793 -2.6107 13 1 3.6210 -2.1701 -3.2159 14 6 5.7703 -2.2900 -3.2190 15 7 6.8510 -1.9721 -2.5525 16 14 5.9036 -2.8915 -4.9824 17 1 5.8334 -1.7320 -5.9076 18 1 7.1976 -3.5958 -5.1687 19 1 4.7856 -3.8249 -5.2728 20 8 2.0438 -0.7391 1.1212 21 1 -0.3633 -1.0260 0.0588 22 1 -0.3633 0.5638 0.8592 23 1 -0.3633 0.4620 -0.9179 24 1 1.3582 -1.5392 -1.5457 25 1 2.3521 -0.1234 -2.0242 26 1 3.6922 -2.5596 3.3209 27 1 6.1106 -2.9079 1.6002 28 1 6.2975 -3.0846 -0.8280 29 1 7.7211 -2.0493 -2.9741 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261278779.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:00 Heat of formation + Delta-G solvation = -85.646919 kcal Electronic energy + Delta-G solvation = -14729.199749 eV Core-core repulsion = 12195.443865 eV Total energy + Delta-G solvation = -2533.755884 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.69378 -38.85587 -37.48622 -34.98434 -33.52113 -31.70523 -30.44529 -27.60895 -26.30025 -23.08108 -22.39024 -22.03775 -19.37805 -18.76877 -17.75725 -17.48781 -16.70691 -16.02372 -15.90017 -15.15850 -14.67376 -14.01449 -13.95482 -13.62426 -13.46410 -13.21970 -13.18128 -12.85314 -12.59411 -12.39295 -12.06469 -11.86126 -11.71111 -11.45527 -11.18359 -10.86773 -9.30563 -8.78244 -8.68142 -6.40243 0.75609 0.93655 1.39859 1.47620 1.55473 2.18844 2.47286 2.64850 3.47489 3.73983 3.89731 3.95988 4.13915 4.42882 4.46819 4.73511 4.81727 4.87910 4.99796 5.02777 5.15765 5.20458 5.28605 5.36772 5.66603 5.84989 5.91807 6.08157 6.32698 6.54803 6.80702 6.84635 7.24635 8.25902 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.029712 B = 0.010289 C = 0.007875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.142241 B = 2720.627455 C = 3554.860913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.068 3.932 3 H 0.078 0.922 4 C -0.075 4.075 5 C -0.294 4.294 6 C 0.092 3.908 7 C -0.063 4.063 8 O -0.502 6.502 9 C -0.095 4.095 10 C -0.190 4.190 11 C 0.117 3.883 12 C -0.479 4.479 13 H 0.083 0.917 14 C 0.037 3.963 15 N -0.817 5.817 16 Si 0.986 3.014 17 H -0.261 1.261 18 H -0.266 1.266 19 H -0.257 1.257 20 O -0.324 6.324 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.101 0.899 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.375 0.625 27 H 0.124 0.876 28 H 0.117 0.883 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 0.131 -0.886 6.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.012 3.988 3 H 0.096 0.904 4 C -0.112 4.112 5 C -0.296 4.296 6 C 0.046 3.954 7 C -0.109 4.109 8 O -0.310 6.310 9 C -0.114 4.114 10 C -0.209 4.209 11 C 0.115 3.885 12 C -0.507 4.507 13 H 0.101 0.899 14 C -0.180 4.180 15 N -0.442 5.442 16 Si 0.806 3.194 17 H -0.186 1.186 18 H -0.190 1.190 19 H -0.180 1.180 20 O -0.240 6.240 21 H 0.080 0.920 22 H 0.093 0.907 23 H 0.119 0.881 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.229 0.771 27 H 0.142 0.858 28 H 0.134 0.866 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.978 0.720 -0.777 6.071 hybrid contribution 0.298 -0.626 -0.512 0.862 sum -5.680 0.093 -1.289 5.825 Atomic orbital electron populations 1.21832 0.89671 1.03358 1.04252 1.23583 0.97184 0.94761 0.83273 0.90443 1.21444 0.93839 0.98249 0.97651 1.20850 1.02280 1.13847 0.92626 1.19963 0.86117 0.95652 0.93623 1.17548 0.95721 1.15890 0.81706 1.84788 1.81260 1.48283 1.16703 1.20652 0.96455 0.98959 0.95349 1.20950 1.01840 1.06153 0.91980 1.17273 0.89524 0.87435 0.94296 1.19778 0.94145 1.44871 0.91944 0.89916 1.26852 0.94346 0.91691 1.05083 1.69897 1.00370 1.33226 1.40696 0.85142 0.79065 0.79369 0.75813 1.18562 1.19008 1.18045 1.86691 1.35323 1.62974 1.39018 0.91988 0.90745 0.88079 0.90416 0.90474 0.77136 0.85832 0.86550 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.60 71.98 0.69 -2.71 15 2 C 0.07 2.42 4.26 31.18 0.13 2.55 15 3 H 0.08 2.67 8.14 -2.39 -0.02 2.65 15 4 C -0.07 -3.00 6.41 30.72 0.20 -2.81 15 5 C -0.29 -14.76 6.13 -19.11 -0.12 -14.88 15 6 C 0.09 4.56 6.98 22.75 0.16 4.72 15 7 C -0.06 -3.12 6.76 23.02 0.16 -2.96 15 8 O -0.50 -21.90 13.48 -90.55 -1.22 -23.12 15 9 C -0.10 -4.68 9.88 22.08 0.22 -4.46 15 10 C -0.19 -10.06 8.65 22.52 0.19 -9.87 15 11 C 0.12 6.34 5.56 -21.37 -0.12 6.22 15 12 C -0.48 -24.88 8.87 23.39 0.21 -24.67 15 13 H 0.08 4.09 7.88 -2.91 -0.02 4.07 15 14 C 0.04 1.78 5.15 85.23 0.44 2.21 15 15 N -0.82 -41.35 10.96 21.82 0.24 -41.11 15 16 Si 0.99 36.22 29.59 68.60 2.03 38.25 15 17 H -0.26 -9.23 7.11 99.48 0.71 -8.52 15 18 H -0.27 -9.30 7.11 99.48 0.71 -8.60 15 19 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 20 O -0.32 -14.48 10.82 -96.15 -1.04 -15.52 15 21 H 0.06 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 23 H 0.10 1.98 8.14 -2.39 -0.02 1.96 15 24 H 0.08 2.88 7.93 -2.39 -0.02 2.86 15 25 H 0.08 2.99 8.14 -2.39 -0.02 2.97 15 26 H 0.38 12.50 9.06 -74.06 -0.67 11.83 15 27 H 0.12 5.37 8.06 -2.91 -0.02 5.34 15 28 H 0.12 6.27 6.19 -2.91 -0.02 6.25 15 29 H 0.29 13.26 8.30 -92.71 -0.77 12.49 15 Total: -1.00 -62.80 252.55 2.67 -60.13 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.50 Total: 28.01 kcal Atomic # 6 Polarization: -48.81 SS G_CDS: 2.16 Total: -46.65 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.24 Total: -41.11 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -2.26 Total: -38.64 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Total: -62.80 2.67 -60.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278779.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.516 kcal (2) G-P(sol) polarization free energy of solvation -62.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds