Wall clock time and date at job start Mon Mar 30 2020 02:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.83110 * 2 1 4 4 C 1.54724 * 110.77677 * 123.38766 * 2 1 3 5 5 C 1.51599 * 101.88550 * 143.39215 * 4 2 1 6 6 C 1.37952 * 107.23200 * 344.73521 * 5 4 2 7 7 C 1.40398 * 118.87541 * 179.37786 * 6 5 4 8 8 O 1.35742 * 119.69034 * 180.27367 * 7 6 5 9 9 C 1.38955 * 120.62496 * 0.27477 * 7 6 5 10 10 C 1.36454 * 120.68307 * 0.06334 * 9 7 6 11 11 C 1.40342 * 132.19934 * 164.67348 * 5 4 2 12 12 C 1.41202 * 120.20927 * 0.62473 * 11 5 4 13 13 H 1.07997 * 119.99597 * 335.13926 * 12 11 5 14 14 C 1.39870 * 119.99979 * 155.14185 * 12 11 5 15 15 N 1.30889 * 120.00455 * 342.28468 * 14 12 11 16 16 Si 1.86799 * 119.99974 * 162.28728 * 14 12 11 17 17 H 1.48499 * 109.47302 * 94.65356 * 16 14 12 18 18 H 1.48496 * 109.47366 * 214.65809 * 16 14 12 19 19 H 1.48500 * 109.47012 * 334.65769 * 16 14 12 20 20 O 1.36232 * 111.34080 * 358.84345 * 6 5 4 21 21 H 1.09001 * 109.47274 * 296.60809 * 1 2 3 22 22 H 1.09000 * 109.47349 * 56.60925 * 1 2 3 23 23 H 1.09001 * 109.46986 * 176.61410 * 1 2 3 24 24 H 1.09003 * 110.94379 * 261.53964 * 4 2 1 25 25 H 1.08999 * 110.94676 * 25.20967 * 4 2 1 26 26 H 0.96698 * 114.00048 * 270.00599 * 8 7 6 27 27 H 1.07998 * 119.65541 * 180.02562 * 9 7 6 28 28 H 1.08009 * 120.17278 * 179.87900 * 10 9 7 29 29 H 0.96998 * 120.00554 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0788 -0.7961 1.2079 5 6 3.3030 -1.4629 0.6121 6 6 3.1948 -1.3649 -0.7597 7 6 4.2174 -1.8984 -1.5602 8 8 4.1306 -1.8061 -2.9117 9 6 5.3176 -2.5199 -0.9822 10 6 5.4250 -2.6251 0.3741 11 6 4.4105 -2.0958 1.1973 12 6 4.5077 -2.2022 2.6020 13 1 3.9938 -1.4931 3.2340 14 6 5.2697 -3.2258 3.1747 15 7 5.6023 -4.2717 2.4614 16 14 5.8126 -3.1003 4.9576 17 1 4.8390 -3.8135 5.8229 18 1 7.1550 -3.7163 5.1109 19 1 5.8752 -1.6713 5.3566 20 8 2.0400 -0.7398 -1.1226 21 1 -0.3634 0.4603 0.9188 22 1 -0.3634 0.5656 -0.8580 23 1 -0.3633 -1.0259 -0.0607 24 1 2.3571 -0.1266 2.0218 25 1 1.3559 -1.5384 1.5463 26 1 3.6813 -2.5539 -3.3289 27 1 6.0954 -2.9244 -1.6129 28 1 6.2828 -3.1116 0.8146 29 1 6.1310 -4.9814 2.8585 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261278781.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:02 Heat of formation + Delta-G solvation = -66.424091 kcal Electronic energy + Delta-G solvation = -14730.061045 eV Core-core repulsion = 12197.138726 eV Total energy + Delta-G solvation = -2532.922319 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.96456 -37.07893 -35.65296 -33.14749 -31.97879 -30.01949 -28.57837 -25.98038 -24.49661 -21.32132 -20.76019 -20.21089 -17.56235 -16.97199 -16.08415 -15.68541 -14.96846 -14.34260 -14.12812 -13.45630 -12.98887 -12.54040 -12.25077 -12.18171 -11.81266 -11.71582 -11.45300 -11.22672 -10.99445 -10.73636 -10.44024 -10.25714 -9.89974 -9.74989 -9.34890 -9.08318 -7.42531 -6.92455 -6.84669 -4.47356 2.59432 2.84814 3.00428 3.02769 3.09480 3.83078 4.15172 4.43825 5.21140 5.35472 5.40933 5.50275 5.71119 5.83146 5.94818 6.17617 6.26290 6.35214 6.58181 6.63714 6.88487 6.92763 7.01170 7.21377 7.49076 7.71608 7.84160 7.96960 8.15821 8.41855 8.65565 8.74186 9.00905 10.03805 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.029685 B = 0.010289 C = 0.007883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.014978 B = 2720.648033 C = 3550.991847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 H 0.072 0.928 4 C -0.077 4.077 5 C -0.273 4.273 6 C 0.107 3.893 7 C -0.053 4.053 8 O -0.497 6.497 9 C -0.092 4.092 10 C -0.169 4.169 11 C 0.147 3.853 12 C -0.451 4.451 13 H 0.080 0.920 14 C 0.076 3.924 15 N -0.785 5.785 16 Si 0.910 3.090 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.259 1.259 20 O -0.314 6.314 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.351 0.649 27 H 0.103 0.897 28 H 0.127 0.873 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.902 2.667 0.201 4.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.090 0.910 4 C -0.114 4.114 5 C -0.275 4.275 6 C 0.062 3.938 7 C -0.098 4.098 8 O -0.303 6.303 9 C -0.111 4.111 10 C -0.189 4.189 11 C 0.144 3.856 12 C -0.480 4.480 13 H 0.098 0.902 14 C -0.143 4.143 15 N -0.410 5.410 16 Si 0.734 3.266 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.183 1.183 20 O -0.229 6.229 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.201 0.799 27 H 0.121 0.879 28 H 0.144 0.856 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.599 2.985 0.111 4.677 hybrid contribution 0.018 -0.566 0.863 1.032 sum -3.581 2.420 0.974 4.430 Atomic orbital electron populations 1.21821 0.93491 1.02826 1.01952 1.23246 0.94412 0.95280 0.85524 0.91020 1.21370 0.95537 0.97821 0.96644 1.20359 0.98996 1.16401 0.91789 1.19699 0.85332 0.95367 0.93409 1.17346 0.96110 1.15600 0.80774 1.84885 1.80455 1.47154 1.17775 1.20401 0.96280 0.98829 0.95618 1.20920 1.00621 1.05973 0.91352 1.16884 0.87745 0.87530 0.93426 1.19539 1.25781 1.10826 0.91820 0.90152 1.25963 0.93682 0.93989 1.00690 1.69849 1.27546 1.05200 1.38390 0.86269 0.78748 0.79929 0.81684 1.19451 1.19866 1.18296 1.86728 1.36195 1.62761 1.37209 0.91060 0.92238 0.91801 0.91185 0.91307 0.79858 0.87853 0.85577 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.59 37.16 0.36 -1.70 15 2 C 0.07 1.33 4.27 -25.83 -0.11 1.22 15 3 H 0.07 1.26 8.14 -51.93 -0.42 0.83 15 4 C -0.08 -1.57 6.41 -26.53 -0.17 -1.74 15 5 C -0.27 -6.81 6.13 -103.49 -0.63 -7.44 15 6 C 0.11 2.65 6.97 -38.87 -0.27 2.38 15 7 C -0.05 -1.31 6.75 -38.50 -0.26 -1.57 15 8 O -0.50 -11.08 13.48 -18.95 -0.26 -11.34 15 9 C -0.09 -2.24 9.87 -39.96 -0.39 -2.64 15 10 C -0.17 -4.37 8.65 -39.19 -0.34 -4.71 15 11 C 0.15 3.88 5.56 -106.95 -0.59 3.29 15 12 C -0.45 -11.56 8.87 -37.85 -0.34 -11.90 15 13 H 0.08 1.97 7.87 -52.49 -0.41 1.56 15 14 C 0.08 1.83 5.14 -17.34 -0.09 1.74 15 15 N -0.79 -19.53 10.97 55.54 0.61 -18.92 15 16 Si 0.91 17.89 29.59 -169.99 -5.03 12.86 15 17 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 18 H -0.27 -5.27 7.11 56.52 0.40 -4.86 15 19 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 20 O -0.31 -7.15 10.82 -20.49 -0.22 -7.37 15 21 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 25 H 0.07 1.36 7.92 -51.93 -0.41 0.95 15 26 H 0.35 6.21 9.06 45.56 0.41 6.63 15 27 H 0.10 2.25 8.06 -52.49 -0.42 1.82 15 28 H 0.13 3.28 6.19 -52.48 -0.33 2.95 15 29 H 0.28 6.36 8.30 -40.82 -0.34 6.02 15 LS Contribution 252.50 15.07 3.81 3.81 Total: -1.00 -29.07 252.50 -6.34 -35.41 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -2.41 Total: 8.60 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -2.84 Total: -23.05 kcal Atomic # 7 Polarization: -19.53 SS G_CDS: 0.61 Total: -18.92 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.48 Total: -18.70 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.07 -6.34 -35.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278781.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.014 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds