Wall clock time and date at job start Mon Mar 30 2020 02:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 110.83110 * 2 1 4 4 C 1.54724 * 110.77677 * 123.38766 * 2 1 3 5 5 C 1.51599 * 101.88550 * 143.39215 * 4 2 1 6 6 C 1.37952 * 107.23200 * 344.73521 * 5 4 2 7 7 C 1.40398 * 118.87541 * 179.37786 * 6 5 4 8 8 O 1.35742 * 119.69034 * 180.27367 * 7 6 5 9 9 C 1.38955 * 120.62496 * 0.27477 * 7 6 5 10 10 C 1.36454 * 120.68307 * 0.06334 * 9 7 6 11 11 C 1.40342 * 132.19934 * 164.67348 * 5 4 2 12 12 C 1.41202 * 120.20927 * 0.62473 * 11 5 4 13 13 H 1.07997 * 119.99597 * 335.13926 * 12 11 5 14 14 C 1.39870 * 119.99979 * 155.14185 * 12 11 5 15 15 N 1.30889 * 120.00455 * 342.28468 * 14 12 11 16 16 Si 1.86799 * 119.99974 * 162.28728 * 14 12 11 17 17 H 1.48499 * 109.47302 * 94.65356 * 16 14 12 18 18 H 1.48496 * 109.47366 * 214.65809 * 16 14 12 19 19 H 1.48500 * 109.47012 * 334.65769 * 16 14 12 20 20 O 1.36232 * 111.34080 * 358.84345 * 6 5 4 21 21 H 1.09001 * 109.47274 * 296.60809 * 1 2 3 22 22 H 1.09000 * 109.47349 * 56.60925 * 1 2 3 23 23 H 1.09001 * 109.46986 * 176.61410 * 1 2 3 24 24 H 1.09003 * 110.94379 * 261.53964 * 4 2 1 25 25 H 1.08999 * 110.94676 * 25.20967 * 4 2 1 26 26 H 0.96698 * 114.00048 * 270.00599 * 8 7 6 27 27 H 1.07998 * 119.65541 * 180.02562 * 9 7 6 28 28 H 1.08009 * 120.17278 * 179.87900 * 10 9 7 29 29 H 0.96998 * 120.00554 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0788 -0.7961 1.2079 5 6 3.3030 -1.4629 0.6121 6 6 3.1948 -1.3649 -0.7597 7 6 4.2174 -1.8984 -1.5602 8 8 4.1306 -1.8061 -2.9117 9 6 5.3176 -2.5199 -0.9822 10 6 5.4250 -2.6251 0.3741 11 6 4.4105 -2.0958 1.1973 12 6 4.5077 -2.2022 2.6020 13 1 3.9938 -1.4931 3.2340 14 6 5.2697 -3.2258 3.1747 15 7 5.6023 -4.2717 2.4614 16 14 5.8126 -3.1003 4.9576 17 1 4.8390 -3.8135 5.8229 18 1 7.1550 -3.7163 5.1109 19 1 5.8752 -1.6713 5.3566 20 8 2.0400 -0.7398 -1.1226 21 1 -0.3634 0.4603 0.9188 22 1 -0.3634 0.5656 -0.8580 23 1 -0.3633 -1.0259 -0.0607 24 1 2.3571 -0.1266 2.0218 25 1 1.3559 -1.5384 1.5463 26 1 3.6813 -2.5539 -3.3289 27 1 6.0954 -2.9244 -1.6129 28 1 6.2828 -3.1116 0.8146 29 1 6.1310 -4.9814 2.8585 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261278781.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:02 Heat of formation + Delta-G solvation = -85.542283 kcal Electronic energy + Delta-G solvation = -14730.890072 eV Core-core repulsion = 12197.138726 eV Total energy + Delta-G solvation = -2533.751346 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.70315 -38.86210 -37.48465 -34.98761 -33.52017 -31.71183 -30.44552 -27.60601 -26.30868 -23.08225 -22.38614 -22.03648 -19.39219 -18.76576 -17.73001 -17.53098 -16.65960 -16.03841 -15.88942 -15.16403 -14.67235 -14.04783 -13.92382 -13.68724 -13.45634 -13.27602 -13.10563 -12.82865 -12.58912 -12.39397 -12.11596 -11.81748 -11.70795 -11.48047 -11.13069 -10.90741 -9.32254 -8.77238 -8.68719 -6.39819 0.76127 0.94009 1.39770 1.47380 1.55515 2.18782 2.48724 2.63757 3.46725 3.75116 3.89305 3.95738 4.14610 4.42799 4.46898 4.73720 4.82542 4.85074 5.00823 5.02950 5.16149 5.20607 5.28506 5.36852 5.66340 5.84374 5.91975 6.08220 6.32760 6.54363 6.80339 6.84569 7.23884 8.25470 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.029685 B = 0.010289 C = 0.007883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.014978 B = 2720.648033 C = 3550.991847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.068 3.932 3 H 0.083 0.917 4 C -0.075 4.075 5 C -0.294 4.294 6 C 0.092 3.908 7 C -0.064 4.064 8 O -0.501 6.501 9 C -0.095 4.095 10 C -0.191 4.191 11 C 0.117 3.883 12 C -0.479 4.479 13 H 0.083 0.917 14 C 0.037 3.963 15 N -0.815 5.815 16 Si 0.985 3.015 17 H -0.261 1.261 18 H -0.265 1.265 19 H -0.257 1.257 20 O -0.325 6.325 21 H 0.101 0.899 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.374 0.626 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.696 3.250 1.014 5.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 H 0.101 0.899 4 C -0.112 4.112 5 C -0.296 4.296 6 C 0.047 3.953 7 C -0.109 4.109 8 O -0.310 6.310 9 C -0.114 4.114 10 C -0.210 4.210 11 C 0.114 3.886 12 C -0.507 4.507 13 H 0.101 0.899 14 C -0.180 4.180 15 N -0.440 5.440 16 Si 0.805 3.195 17 H -0.186 1.186 18 H -0.190 1.190 19 H -0.181 1.181 20 O -0.241 6.241 21 H 0.120 0.880 22 H 0.093 0.907 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.227 0.773 27 H 0.141 0.859 28 H 0.134 0.866 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.413 3.565 0.898 5.744 hybrid contribution 0.227 -0.749 0.509 0.934 sum -4.186 2.816 1.407 5.237 Atomic orbital electron populations 1.21837 0.89910 1.03194 1.04295 1.23611 0.97109 0.94875 0.83184 0.89890 1.21448 0.93943 0.98080 0.97707 1.20853 0.99947 1.16237 0.92550 1.19945 0.86094 0.95619 0.93630 1.17520 0.96280 1.15437 0.81712 1.84791 1.80898 1.48579 1.16687 1.20597 0.96848 0.98524 0.95394 1.20923 1.00719 1.07271 0.92125 1.17272 0.88576 0.88418 0.94296 1.19790 1.27308 1.11773 0.91836 0.89898 1.26831 0.92957 0.93013 1.05167 1.69889 1.27726 1.05857 1.40496 0.85143 0.78558 0.79926 0.75852 1.18588 1.18973 1.18085 1.86704 1.35314 1.62974 1.39095 0.88026 0.90666 0.92326 0.90103 0.90886 0.77303 0.85868 0.86570 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.59 71.98 0.69 -2.77 15 2 C 0.07 2.40 4.27 31.18 0.13 2.53 15 3 H 0.08 2.73 8.14 -2.38 -0.02 2.71 15 4 C -0.07 -3.00 6.41 30.72 0.20 -2.80 15 5 C -0.29 -14.74 6.13 -19.13 -0.12 -14.86 15 6 C 0.09 4.60 6.97 22.73 0.16 4.75 15 7 C -0.06 -3.16 6.75 22.97 0.15 -3.00 15 8 O -0.50 -21.91 13.48 -90.66 -1.22 -23.13 15 9 C -0.09 -4.66 9.87 22.02 0.22 -4.44 15 10 C -0.19 -10.12 8.65 22.52 0.19 -9.93 15 11 C 0.12 6.32 5.56 -21.37 -0.12 6.20 15 12 C -0.48 -24.86 8.87 23.39 0.21 -24.65 15 13 H 0.08 4.10 7.87 -2.91 -0.02 4.07 15 14 C 0.04 1.78 5.14 85.23 0.44 2.22 15 15 N -0.81 -40.92 10.97 21.82 0.24 -40.68 15 16 Si 0.99 36.18 29.59 68.60 2.03 38.21 15 17 H -0.26 -9.21 7.11 99.48 0.71 -8.50 15 18 H -0.27 -9.30 7.11 99.48 0.71 -8.60 15 19 H -0.26 -9.28 7.11 99.48 0.71 -8.58 15 20 O -0.33 -14.51 10.82 -96.19 -1.04 -15.55 15 21 H 0.10 2.00 8.14 -2.39 -0.02 1.98 15 22 H 0.07 1.70 8.14 -2.39 -0.02 1.68 15 23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 15 24 H 0.08 3.01 8.14 -2.39 -0.02 2.99 15 25 H 0.07 2.82 7.92 -2.39 -0.02 2.80 15 26 H 0.37 12.77 9.06 -74.06 -0.67 12.09 15 27 H 0.12 5.36 8.06 -2.91 -0.02 5.34 15 28 H 0.12 6.25 6.19 -2.91 -0.02 6.24 15 29 H 0.29 13.14 8.30 -92.71 -0.77 12.37 15 Total: -1.00 -62.43 252.50 2.66 -59.76 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.50 Total: 28.15 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 2.16 Total: -46.75 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.24 Total: -40.68 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -2.26 Total: -38.69 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Total: -62.43 2.66 -59.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261278781.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.779 kcal (2) G-P(sol) polarization free energy of solvation -62.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds