Wall clock time and date at job start Mon Mar 30 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32540 * 120.46173 * 2 1 4 4 C 1.31764 * 120.87008 * 180.02562 * 3 2 1 5 5 N 1.31736 * 121.87820 * 0.09790 * 4 3 2 6 6 C 1.33076 * 120.70651 * 359.97438 * 5 4 3 7 7 C 1.38260 * 120.46869 * 180.02562 * 2 1 3 8 8 C 1.50501 * 119.72155 * 359.67783 * 7 2 1 9 9 C 1.53167 * 109.49502 * 162.60440 * 8 7 2 10 10 H 1.09004 * 109.68670 * 288.10722 * 9 8 7 11 11 C 1.50702 * 109.68250 * 167.58157 * 9 8 7 12 12 H 1.08002 * 120.00299 * 0.53333 * 11 9 8 13 13 C 1.37884 * 119.99942 * 180.24891 * 11 9 8 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 9 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 9 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.53396 * 108.39900 * 47.84853 * 9 8 7 20 20 O 1.35261 * 119.37922 * 179.78073 * 6 5 4 21 21 H 1.08994 * 109.47453 * 269.97527 * 1 2 3 22 22 H 1.08998 * 109.47210 * 29.97799 * 1 2 3 23 23 H 1.09008 * 109.46842 * 149.97299 * 1 2 3 24 24 H 1.08001 * 119.05986 * 180.09766 * 4 3 2 25 25 H 1.08996 * 109.49779 * 42.58203 * 8 7 2 26 26 H 1.08992 * 109.44168 * 282.59628 * 8 7 2 27 27 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 28 28 H 1.09003 * 109.62162 * 55.06062 * 19 9 8 29 29 H 1.08990 * 109.62416 * 175.62796 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1789 1.1425 0.0000 4 6 3.4965 1.1518 -0.0005 5 7 4.2002 0.0382 -0.0029 6 6 3.5959 -1.1475 -0.0045 7 6 2.2080 -1.1917 -0.0005 8 6 1.4599 -2.4975 0.0062 9 6 2.3992 -3.6270 -0.4273 10 1 2.6043 -3.5448 -1.4947 11 6 1.7594 -4.9597 -0.1346 12 1 0.7753 -5.0007 0.3085 13 6 2.4280 -6.1269 -0.4378 14 7 3.6263 -6.0770 -0.9774 15 14 1.6317 -7.7787 -0.0821 16 1 0.2921 -7.5629 0.5211 17 1 1.4870 -8.5414 -1.3481 18 1 2.4829 -8.5454 0.8630 19 6 3.7082 -3.4979 0.3619 20 8 4.3446 -2.2739 -0.0115 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5143 24 1 4.0143 2.0996 0.0011 25 1 0.6192 -2.4388 -0.6851 26 1 1.0899 -2.6985 1.0116 27 1 4.0968 -6.8982 -1.1904 28 1 3.4920 -3.4877 1.4303 29 1 4.3622 -4.3372 0.1259 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261300354.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:40 Heat of formation + Delta-G solvation = -2.576473 kcal Electronic energy + Delta-G solvation = -14804.152304 eV Core-core repulsion = 12306.291376 eV Total energy + Delta-G solvation = -2497.860928 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.96128 -38.21675 -35.05291 -33.42970 -32.25626 -30.60337 -28.13245 -25.71100 -25.22030 -23.11929 -21.94797 -19.63984 -17.70507 -17.25746 -16.65532 -15.12691 -14.84652 -14.67275 -14.06996 -13.86160 -13.44863 -13.24499 -12.68546 -12.57200 -12.41787 -11.94420 -11.53709 -11.12701 -10.94614 -10.55399 -10.37623 -10.13989 -9.72503 -9.36595 -9.21037 -8.64717 -8.61288 -8.25776 -6.28332 -4.36258 1.36456 1.62138 3.16176 3.25430 3.28366 3.50722 4.18181 4.23378 4.41747 4.79609 4.99492 5.12836 5.32649 5.57039 5.68111 5.80434 5.90323 6.03738 6.10984 6.23068 6.42850 6.51280 6.64186 6.79317 7.23092 7.34016 7.44929 7.67934 7.91027 8.13556 8.62162 8.68545 9.31187 10.79317 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.047224 B = 0.008358 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.774281 B = 3349.332048 C = 3858.070277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.183 3.817 3 N -0.555 5.555 4 C 0.314 3.686 5 N -0.551 5.551 6 C 0.383 3.617 7 C -0.245 4.245 8 C -0.064 4.064 9 C 0.014 3.986 10 H 0.043 0.957 11 C -0.518 4.518 12 H 0.065 0.935 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.901 3.099 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.062 3.938 20 O -0.306 6.306 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.194 0.806 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.267 0.733 28 H 0.045 0.955 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.947 7.825 2.342 9.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.041 3.959 3 N -0.275 5.275 4 C 0.025 3.975 5 N -0.279 5.279 6 C 0.197 3.803 7 C -0.251 4.251 8 C -0.102 4.102 9 C -0.004 4.004 10 H 0.061 0.939 11 C -0.555 4.555 12 H 0.084 0.916 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.728 3.272 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.012 4.012 20 O -0.210 6.210 21 H 0.100 0.900 22 H 0.096 0.904 23 H 0.102 0.898 24 H 0.211 0.789 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.114 8.371 2.229 9.206 hybrid contribution -0.765 -1.752 0.180 1.920 sum -3.879 6.619 2.409 8.041 Atomic orbital electron populations 1.20761 0.88305 1.03800 1.03304 1.21369 0.97185 0.87254 0.90093 1.68174 1.10083 1.30117 1.19112 1.24558 0.86626 0.95419 0.90867 1.67770 1.42239 0.97354 1.20541 1.19586 0.86840 0.87261 0.86662 1.21496 0.94714 0.99254 1.09628 1.20616 0.98328 0.89514 1.01781 1.19365 0.90943 0.93336 0.96779 0.93885 1.21038 1.03175 0.89320 1.42016 0.91648 1.25071 0.94973 0.99749 0.94307 1.69808 1.12495 1.28493 1.41979 0.86386 0.79512 0.83151 0.78152 1.19558 1.20780 1.20772 1.23936 0.99364 0.80297 0.97584 1.85845 1.39953 1.14769 1.80472 0.90023 0.90439 0.89776 0.78907 0.90691 0.90909 0.92303 0.93619 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.80 36.00 0.35 -1.00 15 2 C 0.18 3.14 6.82 -82.28 -0.56 2.58 15 3 N -0.55 -9.45 10.38 -10.86 -0.11 -9.56 15 4 C 0.31 5.23 12.28 -92.23 -1.13 4.10 15 5 N -0.55 -11.01 10.47 -14.79 -0.15 -11.17 15 6 C 0.38 8.26 7.54 -16.78 -0.13 8.13 15 7 C -0.24 -4.80 5.75 -104.48 -0.60 -5.40 15 8 C -0.06 -1.27 4.52 -27.89 -0.13 -1.40 15 9 C 0.01 0.34 2.32 -91.48 -0.21 0.13 15 10 H 0.04 1.14 8.14 -51.93 -0.42 0.71 15 11 C -0.52 -13.02 8.54 -34.44 -0.29 -13.31 15 12 H 0.07 1.60 7.75 -52.49 -0.41 1.19 15 13 C 0.06 1.57 5.30 -17.82 -0.09 1.48 15 14 N -0.89 -23.84 11.37 55.43 0.63 -23.21 15 15 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 15 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 19 C 0.06 1.45 6.14 37.36 0.23 1.68 15 20 O -0.31 -7.15 10.38 -17.48 -0.18 -7.33 15 21 H 0.08 0.94 8.14 -51.93 -0.42 0.51 15 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.08 1.04 6.21 -51.92 -0.32 0.72 15 24 H 0.19 2.34 8.06 -52.49 -0.42 1.92 15 25 H 0.07 1.36 6.55 -51.93 -0.34 1.02 15 26 H 0.07 1.38 8.09 -51.93 -0.42 0.96 15 27 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 28 H 0.05 1.02 8.14 -51.93 -0.42 0.59 15 29 H 0.14 3.65 6.07 -51.93 -0.32 3.34 15 LS Contribution 246.06 15.07 3.71 3.71 Total: -1.00 -28.20 246.06 -6.75 -34.95 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -3.05 Total: 0.82 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.57 Total: -3.01 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.36 Total: -43.94 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.18 Total: -7.33 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.20 -6.75 -34.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261300354.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.375 kcal (2) G-P(sol) polarization free energy of solvation -28.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds