Wall clock time and date at job start Mon Mar 30 2020 02:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47081 * 2 1 4 4 C 1.50700 * 109.47240 * 239.99955 * 2 1 3 5 5 O 1.20816 * 120.00175 * 240.00323 * 4 2 1 6 6 O 1.34231 * 119.99831 * 60.00136 * 4 2 1 7 7 C 1.50697 * 109.46726 * 120.00109 * 2 1 3 8 8 C 1.37636 * 120.12890 * 54.34027 * 7 2 1 9 9 C 1.38622 * 120.24858 * 179.69994 * 8 7 2 10 10 C 1.38657 * 120.49669 * 0.59600 * 9 8 7 11 11 C 1.37594 * 120.25183 * 359.67622 * 10 9 8 12 12 C 1.40702 * 120.12578 * 234.60853 * 7 2 1 13 13 C 1.41389 * 120.24386 * 0.02562 * 12 7 2 14 14 H 1.08003 * 120.00202 * 329.99058 * 13 12 7 15 15 C 1.39948 * 119.99827 * 149.99018 * 13 12 7 16 16 N 1.30831 * 119.99734 * 163.08267 * 15 13 12 17 17 Si 1.86792 * 120.00142 * 343.08374 * 15 13 12 18 18 H 1.48504 * 109.47248 * 90.44419 * 17 15 13 19 19 H 1.48498 * 109.47260 * 210.44121 * 17 15 13 20 20 H 1.48499 * 109.47335 * 330.44132 * 17 15 13 21 21 H 1.08999 * 109.47477 * 299.99946 * 1 2 3 22 22 H 1.09001 * 109.46959 * 60.00225 * 1 2 3 23 23 H 1.09003 * 109.47443 * 179.97438 * 1 2 3 24 24 H 0.96698 * 116.99743 * 180.02562 * 6 4 2 25 25 H 1.08003 * 119.87647 * 359.97438 * 8 7 2 26 26 H 1.08001 * 119.75133 * 180.29870 * 9 8 7 27 27 H 1.08004 * 119.87323 * 179.70832 * 10 9 8 28 28 H 1.08005 * 120.13091 * 180.02562 * 11 10 9 29 29 H 0.96992 * 119.99828 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7269 -1.6927 -1.1196 6 8 1.7081 -0.2518 -2.4496 7 6 2.0322 -0.7104 1.2305 8 6 1.6082 -1.9894 1.5112 9 6 2.0734 -2.6475 2.6391 10 6 2.9599 -2.0227 3.5029 11 6 3.3930 -0.7424 3.2450 12 6 2.9321 -0.0667 2.0997 13 6 3.3698 1.2493 1.8248 14 1 3.4431 1.5917 0.8030 15 6 3.7081 2.1083 2.8766 16 7 4.4142 3.1842 2.6411 17 14 3.1515 1.7186 4.6165 18 1 4.1866 0.8983 5.2954 19 1 2.9518 2.9840 5.3675 20 1 1.8735 0.9637 4.5701 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 2.0536 -0.7410 -3.2088 25 1 0.9138 -2.4837 0.8480 26 1 1.7390 -3.6528 2.8491 27 1 3.3123 -2.5431 4.3812 28 1 4.0839 -0.2577 3.9190 29 1 4.6489 3.7793 3.3701 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306416206.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:30 Heat of formation + Delta-G solvation = -103.030309 kcal Electronic energy + Delta-G solvation = -14826.455504 eV Core-core repulsion = 12291.945820 eV Total energy + Delta-G solvation = -2534.509684 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.42189 -39.60429 -36.98440 -35.51445 -35.02670 -32.29758 -30.21461 -26.99107 -25.95399 -23.70801 -22.70026 -20.79990 -19.28132 -18.92698 -17.67468 -17.49597 -16.55612 -16.18149 -15.67961 -15.51876 -14.66814 -14.42995 -14.20517 -13.80354 -13.53677 -13.15232 -12.90859 -12.69613 -12.55791 -12.50455 -12.37361 -11.89825 -11.58998 -11.29070 -11.23174 -10.92348 -9.43553 -9.36543 -8.87082 -6.48312 0.74769 0.87342 1.28688 1.31821 1.41126 1.50667 2.13563 2.30203 2.65876 3.52799 3.92310 4.14685 4.38292 4.41383 4.44982 4.63781 4.78927 4.85281 4.99897 5.03774 5.18267 5.31287 5.34698 5.62913 5.67177 5.85244 5.90098 6.02177 6.25970 6.41732 6.74831 6.86714 7.11095 8.20219 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.027703 B = 0.012073 C = 0.009695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.493734 B = 2318.646661 C = 2887.340497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.032 4.032 3 H 0.105 0.895 4 C 0.487 3.513 5 O -0.544 6.544 6 O -0.509 6.509 7 C -0.179 4.179 8 C -0.060 4.060 9 C -0.232 4.232 10 C -0.084 4.084 11 C -0.259 4.259 12 C 0.080 3.920 13 C -0.479 4.479 14 H 0.064 0.936 15 C 0.051 3.949 16 N -0.849 5.849 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.253 1.253 21 H 0.070 0.930 22 H 0.082 0.918 23 H 0.064 0.936 24 H 0.422 0.578 25 H 0.114 0.886 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.099 0.901 29 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.348 -4.910 -2.604 9.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.051 4.051 3 H 0.123 0.877 4 C 0.331 3.669 5 O -0.434 6.434 6 O -0.322 6.322 7 C -0.181 4.181 8 C -0.078 4.078 9 C -0.251 4.251 10 C -0.102 4.102 11 C -0.278 4.278 12 C 0.078 3.922 13 C -0.509 4.509 14 H 0.082 0.918 15 C -0.164 4.164 16 N -0.475 5.475 17 Si 0.789 3.211 18 H -0.189 1.189 19 H -0.206 1.206 20 H -0.177 1.177 21 H 0.089 0.911 22 H 0.101 0.899 23 H 0.083 0.917 24 H 0.283 0.717 25 H 0.132 0.868 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.116 0.884 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.182 -4.691 -2.226 8.863 hybrid contribution 0.700 -0.067 0.041 0.705 sum -6.482 -4.758 -2.185 8.332 Atomic orbital electron populations 1.21718 0.89824 1.03033 1.03707 1.19746 0.99037 0.99975 0.86384 0.87695 1.23845 0.76098 0.81782 0.85198 1.90665 1.37057 1.27956 1.87707 1.84517 1.72039 1.59044 1.16626 1.19415 1.03043 0.96851 0.98772 1.20711 0.97820 0.93246 0.96025 1.20883 1.05034 1.01049 0.98109 1.21006 0.96332 0.94100 0.98739 1.21238 1.07296 0.97239 1.02061 1.17752 0.89426 0.93064 0.91957 1.19391 1.39931 0.96617 0.94923 0.91817 1.26746 0.91196 0.93890 1.04580 1.69713 1.27928 1.12821 1.37061 0.85536 0.80954 0.77317 0.77298 1.18898 1.20576 1.17673 0.91104 0.89879 0.91651 0.71690 0.86781 0.85456 0.85708 0.88356 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 8.87 71.98 0.64 -3.11 15 2 C -0.03 -1.26 2.84 -12.29 -0.03 -1.30 15 3 H 0.11 4.48 5.84 -2.39 -0.01 4.47 15 4 C 0.49 18.02 7.52 71.24 0.54 18.55 15 5 O -0.54 -23.62 16.16 21.99 0.36 -23.27 15 6 O -0.51 -14.07 13.33 -51.43 -0.69 -14.76 15 7 C -0.18 -8.11 4.38 -19.41 -0.08 -8.19 15 8 C -0.06 -2.47 8.22 22.22 0.18 -2.28 15 9 C -0.23 -9.18 10.05 22.46 0.23 -8.96 15 10 C -0.08 -3.51 10.02 22.22 0.22 -3.29 15 11 C -0.26 -12.51 7.25 22.73 0.16 -12.35 15 12 C 0.08 4.10 5.11 -21.29 -0.11 3.99 15 13 C -0.48 -26.23 8.67 23.46 0.20 -26.03 15 14 H 0.06 3.70 6.70 -2.91 -0.02 3.68 15 15 C 0.05 2.67 5.42 85.26 0.46 3.13 15 16 N -0.85 -46.03 13.93 21.83 0.30 -45.73 15 17 Si 0.96 42.75 24.53 68.60 1.68 44.43 15 18 H -0.26 -11.25 6.48 99.48 0.64 -10.61 15 19 H -0.28 -11.57 7.11 99.48 0.71 -10.86 15 20 H -0.25 -11.35 7.01 99.48 0.70 -10.66 15 21 H 0.07 2.12 8.14 -2.39 -0.02 2.10 15 22 H 0.08 2.08 8.11 -2.39 -0.02 2.06 15 23 H 0.06 1.78 7.10 -2.39 -0.02 1.76 15 24 H 0.42 7.48 9.10 -74.06 -0.67 6.81 15 25 H 0.11 4.11 7.24 -2.91 -0.02 4.09 15 26 H 0.13 4.16 8.06 -2.91 -0.02 4.14 15 27 H 0.12 4.37 8.06 -2.91 -0.02 4.35 15 28 H 0.10 4.75 4.52 -2.91 -0.01 4.74 15 29 H 0.29 14.33 8.30 -92.71 -0.77 13.56 15 Total: -1.00 -64.02 248.06 4.50 -59.52 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.44 Total: 19.64 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 2.41 Total: -39.83 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.30 Total: -45.73 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.33 Total: -38.03 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.68 Total: 44.43 kcal Total: -64.02 4.50 -59.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306416206.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.511 kcal (2) G-P(sol) polarization free energy of solvation -64.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds