Wall clock time and date at job start Mon Mar 30 2020 02:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.46959 * 2 1 4 4 O 1.21387 * 119.99882 * 359.97438 * 3 2 1 5 5 C 1.46188 * 120.00092 * 180.02562 * 3 2 1 6 6 C 1.40282 * 120.62451 * 354.77651 * 5 3 2 7 7 O 1.35566 * 120.07470 * 0.04009 * 6 5 3 8 8 C 1.38885 * 119.85151 * 180.30094 * 6 5 3 9 9 C 1.38390 * 121.22833 * 359.69437 * 8 6 5 10 10 C 1.37701 * 121.33509 * 0.02562 * 9 8 6 11 11 C 1.40722 * 120.01888 * 0.02562 * 10 9 8 12 12 C 1.40691 * 120.58650 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99921 * 145.94194 * 12 11 10 14 14 C 1.40375 * 120.00348 * 325.65255 * 12 11 10 15 15 N 1.30564 * 120.00095 * 167.76498 * 14 12 11 16 16 Si 1.86799 * 119.99751 * 347.77497 * 14 12 11 17 17 H 1.48493 * 109.47525 * 86.44251 * 16 14 12 18 18 H 1.48507 * 109.47307 * 206.44611 * 16 14 12 19 19 H 1.48500 * 109.47426 * 326.44300 * 16 14 12 20 20 H 1.09000 * 109.46695 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47281 * 300.00485 * 1 2 3 22 22 H 1.09005 * 109.46402 * 60.00518 * 1 2 3 23 23 H 1.08996 * 109.47798 * 239.99591 * 2 1 3 24 24 H 1.09001 * 109.47117 * 119.99408 * 2 1 3 25 25 H 0.96703 * 113.99575 * 270.26103 * 7 6 5 26 26 H 1.08001 * 119.38151 * 179.71122 * 8 6 5 27 27 H 1.08006 * 119.32906 * 180.02562 * 9 8 6 28 28 H 1.07997 * 119.99008 * 180.02562 * 10 9 8 29 29 H 0.97002 * 119.99990 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2435 2.3435 -0.0005 5 6 3.4696 1.6881 -0.0006 6 6 4.3919 0.6368 0.1088 7 8 3.9549 -0.6421 0.2156 8 6 5.7537 0.9095 0.1129 9 6 6.2262 2.2057 0.0043 10 6 5.3655 3.2743 -0.1113 11 6 3.9746 3.0603 -0.1203 12 6 3.0844 4.1434 -0.2373 13 1 2.1536 4.0220 -0.7713 14 6 3.4031 5.3801 0.3453 15 7 2.7077 6.4429 0.0427 16 14 4.8224 5.5053 1.5533 17 1 6.0882 5.7253 0.8089 18 1 4.5872 6.6439 2.4772 19 1 4.9201 4.2461 2.3345 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 1.8935 -0.5139 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 3.8095 -0.9332 1.1262 26 1 6.4570 0.0947 0.2021 27 1 7.2916 2.3827 0.0104 28 1 5.7579 4.2769 -0.1952 29 1 2.9282 7.2975 0.4450 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306821079.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:06 Heat of formation + Delta-G solvation = -67.873113 kcal Electronic energy + Delta-G solvation = -14822.988532 eV Core-core repulsion = 12290.003379 eV Total energy + Delta-G solvation = -2532.985154 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.06818 -37.27925 -35.99145 -33.61573 -31.95540 -30.41025 -29.16843 -25.86041 -24.01657 -21.73387 -20.85767 -18.80664 -18.26029 -16.34751 -15.95495 -15.38943 -14.67531 -14.57616 -14.07764 -13.72230 -13.22538 -13.00480 -12.40614 -12.04827 -11.79276 -11.73495 -11.41035 -11.21992 -11.02180 -10.55305 -10.37596 -10.31568 -9.98551 -9.65144 -9.31858 -8.26285 -7.69298 -7.63651 -7.11433 -4.66117 1.82414 2.45043 2.99368 3.07387 3.18089 3.65501 3.82393 4.32380 4.83670 5.13720 5.28674 5.69838 5.72316 5.92072 6.00903 6.14481 6.28733 6.36921 6.50638 6.58873 6.68704 6.71846 6.91707 7.14310 7.32203 7.50983 7.63130 7.68852 8.20739 8.32670 8.55633 8.64105 8.96159 9.84253 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.026654 B = 0.013101 C = 0.009326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.251462 B = 2136.796475 C = 3001.503587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.153 4.153 3 C 0.386 3.614 4 O -0.468 6.468 5 C -0.307 4.307 6 C 0.188 3.812 7 O -0.505 6.505 8 C -0.289 4.289 9 C -0.042 4.042 10 C -0.252 4.252 11 C 0.122 3.878 12 C -0.382 4.382 13 H 0.118 0.882 14 C 0.077 3.923 15 N -0.778 5.778 16 Si 0.919 3.081 17 H -0.263 1.263 18 H -0.288 1.288 19 H -0.245 1.245 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.380 0.620 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 -7.274 2.951 8.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.191 4.191 3 C 0.269 3.731 4 O -0.348 6.348 5 C -0.310 4.310 6 C 0.144 3.856 7 O -0.316 6.316 8 C -0.308 4.308 9 C -0.061 4.061 10 C -0.271 4.271 11 C 0.118 3.882 12 C -0.408 4.408 13 H 0.135 0.865 14 C -0.146 4.146 15 N -0.400 5.400 16 Si 0.745 3.255 17 H -0.189 1.189 18 H -0.215 1.215 19 H -0.169 1.169 20 H 0.067 0.933 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.108 0.892 24 H 0.099 0.901 25 H 0.236 0.764 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.141 -6.508 2.332 7.237 hybrid contribution 0.762 0.050 0.952 1.221 sum 2.903 -6.459 3.284 7.806 Atomic orbital electron populations 1.21618 0.95605 1.00206 1.02569 1.21985 0.95903 0.97577 1.03626 1.21691 0.88381 0.89735 0.73311 1.90498 1.58424 1.47006 1.38871 1.21311 0.93365 0.93196 1.23172 1.18522 0.91130 0.81512 0.94427 1.84709 1.88206 1.27234 1.31464 1.20435 0.93830 0.96287 1.20295 1.20499 0.97769 0.92514 0.95326 1.21239 0.93621 0.97942 1.14290 1.18546 0.91338 0.91021 0.87336 1.20059 1.05589 0.91005 1.24153 0.86468 1.26482 0.96932 0.94423 0.96738 1.69535 1.35672 1.00537 1.34260 0.86257 0.80072 0.79206 0.80002 1.18904 1.21474 1.16861 0.93332 0.92715 0.92624 0.89180 0.90101 0.76426 0.88094 0.88323 0.87293 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.20 37.16 0.34 -1.94 15 2 C -0.15 -2.66 4.59 -27.88 -0.13 -2.79 15 3 C 0.39 8.78 7.06 -31.12 -0.22 8.56 15 4 O -0.47 -12.22 13.44 5.46 0.07 -12.14 15 5 C -0.31 -7.29 6.07 -102.52 -0.62 -7.92 15 6 C 0.19 3.90 6.71 -38.57 -0.26 3.64 15 7 O -0.51 -8.46 10.18 -18.39 -0.19 -8.65 15 8 C -0.29 -5.84 9.93 -39.29 -0.39 -6.23 15 9 C -0.04 -0.88 9.95 -39.72 -0.40 -1.28 15 10 C -0.25 -5.91 7.23 -38.84 -0.28 -6.19 15 11 C 0.12 3.14 5.21 -104.61 -0.55 2.59 15 12 C -0.38 -10.53 8.34 -37.85 -0.32 -10.85 15 13 H 0.12 3.55 6.26 -52.49 -0.33 3.22 15 14 C 0.08 2.00 5.47 -17.29 -0.09 1.90 15 15 N -0.78 -20.37 13.91 55.57 0.77 -19.60 15 16 Si 0.92 20.23 24.57 -169.99 -4.18 16.06 15 17 H -0.26 -5.49 6.40 56.52 0.36 -5.13 15 18 H -0.29 -6.04 7.11 56.52 0.40 -5.64 15 19 H -0.25 -5.56 7.05 56.52 0.40 -5.16 15 20 H 0.05 0.63 8.14 -51.93 -0.42 0.20 15 21 H 0.05 0.90 8.10 -51.93 -0.42 0.48 15 22 H 0.05 0.94 8.10 -51.93 -0.42 0.52 15 23 H 0.09 1.53 7.61 -51.93 -0.40 1.14 15 24 H 0.08 1.20 6.53 -51.93 -0.34 0.86 15 25 H 0.38 4.58 8.26 45.56 0.38 4.95 15 26 H 0.10 1.80 8.06 -52.49 -0.42 1.38 15 27 H 0.10 1.74 8.06 -52.48 -0.42 1.32 15 28 H 0.11 2.49 4.69 -52.49 -0.25 2.25 15 29 H 0.29 6.79 8.29 -40.82 -0.34 6.46 15 LS Contribution 244.52 15.07 3.68 3.68 Total: -1.00 -29.34 244.52 -4.96 -34.30 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -2.22 Total: 6.85 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -2.91 Total: -20.49 kcal Atomic # 7 Polarization: -20.37 SS G_CDS: 0.77 Total: -19.60 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.11 Total: -20.80 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.18 Total: 16.06 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.34 -4.96 -34.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306821079.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.575 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds