Wall clock time and date at job start Mon Mar 30 2020 02:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.46959 * 2 1 4 4 O 1.21387 * 119.99882 * 359.97438 * 3 2 1 5 5 C 1.46188 * 120.00092 * 180.02562 * 3 2 1 6 6 C 1.40282 * 120.62451 * 354.77651 * 5 3 2 7 7 O 1.35566 * 120.07470 * 0.04009 * 6 5 3 8 8 C 1.38885 * 119.85151 * 180.30094 * 6 5 3 9 9 C 1.38390 * 121.22833 * 359.69437 * 8 6 5 10 10 C 1.37701 * 121.33509 * 0.02562 * 9 8 6 11 11 C 1.40722 * 120.01888 * 0.02562 * 10 9 8 12 12 C 1.40691 * 120.58650 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99921 * 145.94194 * 12 11 10 14 14 C 1.40375 * 120.00348 * 325.65255 * 12 11 10 15 15 N 1.30564 * 120.00095 * 167.76498 * 14 12 11 16 16 Si 1.86799 * 119.99751 * 347.77497 * 14 12 11 17 17 H 1.48493 * 109.47525 * 86.44251 * 16 14 12 18 18 H 1.48507 * 109.47307 * 206.44611 * 16 14 12 19 19 H 1.48500 * 109.47426 * 326.44300 * 16 14 12 20 20 H 1.09000 * 109.46695 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47281 * 300.00485 * 1 2 3 22 22 H 1.09005 * 109.46402 * 60.00518 * 1 2 3 23 23 H 1.08996 * 109.47798 * 239.99591 * 2 1 3 24 24 H 1.09001 * 109.47117 * 119.99408 * 2 1 3 25 25 H 0.96703 * 113.99575 * 270.26103 * 7 6 5 26 26 H 1.08001 * 119.38151 * 179.71122 * 8 6 5 27 27 H 1.08006 * 119.32906 * 180.02562 * 9 8 6 28 28 H 1.07997 * 119.99008 * 180.02562 * 10 9 8 29 29 H 0.97002 * 119.99990 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2435 2.3435 -0.0005 5 6 3.4696 1.6881 -0.0006 6 6 4.3919 0.6368 0.1088 7 8 3.9549 -0.6421 0.2156 8 6 5.7537 0.9095 0.1129 9 6 6.2262 2.2057 0.0043 10 6 5.3655 3.2743 -0.1113 11 6 3.9746 3.0603 -0.1203 12 6 3.0844 4.1434 -0.2373 13 1 2.1536 4.0220 -0.7713 14 6 3.4031 5.3801 0.3453 15 7 2.7077 6.4429 0.0427 16 14 4.8224 5.5053 1.5533 17 1 6.0882 5.7253 0.8089 18 1 4.5872 6.6439 2.4772 19 1 4.9201 4.2461 2.3345 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 1.8935 -0.5139 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 3.8095 -0.9332 1.1262 26 1 6.4570 0.0947 0.2021 27 1 7.2916 2.3827 0.0104 28 1 5.7579 4.2769 -0.1952 29 1 2.9282 7.2975 0.4450 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306821079.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:06 Heat of formation + Delta-G solvation = -88.667085 kcal Electronic energy + Delta-G solvation = -14823.890227 eV Core-core repulsion = 12290.003379 eV Total energy + Delta-G solvation = -2533.886848 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.76224 -38.98863 -37.62717 -35.43365 -33.44130 -32.20213 -30.85794 -27.61208 -25.64978 -23.37785 -22.54679 -20.48277 -19.97450 -18.01791 -17.66844 -17.13034 -16.30561 -16.23609 -15.62550 -15.34470 -14.93291 -14.75534 -14.12637 -13.76678 -13.37959 -13.25740 -13.02105 -12.83211 -12.60778 -12.18364 -12.07513 -11.89137 -11.74905 -11.26759 -11.01176 -10.03876 -9.47490 -9.36502 -8.98142 -6.61401 0.08745 0.71435 1.21648 1.35335 1.43695 1.91852 2.05427 2.53532 3.22932 3.53583 3.60252 4.28506 4.34253 4.37464 4.47526 4.64665 4.74930 4.82921 4.99525 5.11049 5.16028 5.17947 5.36272 5.46285 5.62979 5.78200 5.88339 6.03059 6.27368 6.59758 6.64848 7.05033 7.21168 8.05294 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.026654 B = 0.013101 C = 0.009326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.251462 B = 2136.796475 C = 3001.503587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.141 4.141 3 C 0.374 3.626 4 O -0.515 6.515 5 C -0.338 4.338 6 C 0.203 3.797 7 O -0.495 6.495 8 C -0.274 4.274 9 C -0.033 4.033 10 C -0.275 4.275 11 C 0.109 3.891 12 C -0.433 4.433 13 H 0.066 0.934 14 C 0.038 3.962 15 N -0.829 5.829 16 Si 0.976 3.024 17 H -0.241 1.241 18 H -0.274 1.274 19 H -0.254 1.254 20 H 0.088 0.912 21 H 0.042 0.958 22 H 0.034 0.966 23 H 0.101 0.899 24 H 0.117 0.883 25 H 0.407 0.593 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.110 0.890 29 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.346 -10.475 4.093 12.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.178 4.178 3 C 0.259 3.741 4 O -0.398 6.398 5 C -0.341 4.341 6 C 0.158 3.842 7 O -0.310 6.310 8 C -0.294 4.294 9 C -0.052 4.052 10 C -0.294 4.294 11 C 0.105 3.895 12 C -0.461 4.461 13 H 0.084 0.916 14 C -0.179 4.179 15 N -0.454 5.454 16 Si 0.798 3.202 17 H -0.165 1.165 18 H -0.201 1.201 19 H -0.178 1.178 20 H 0.107 0.893 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.119 0.881 24 H 0.135 0.865 25 H 0.268 0.732 26 H 0.158 0.842 27 H 0.158 0.842 28 H 0.127 0.873 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.837 -9.742 3.479 11.419 hybrid contribution -0.034 0.686 0.560 0.886 sum 4.804 -9.055 4.039 11.017 Atomic orbital electron populations 1.21620 0.94807 1.02260 1.01077 1.21966 0.96607 0.93660 1.05603 1.22592 0.88134 0.91865 0.71497 1.90502 1.59362 1.49156 1.40759 1.21794 0.94893 0.93698 1.23728 1.18469 0.90935 0.82172 0.92647 1.84641 1.87911 1.24587 1.33834 1.20966 0.94130 0.97174 1.17081 1.20992 0.99590 0.91910 0.92673 1.21339 0.92882 0.99247 1.15952 1.18850 0.92429 0.91517 0.86720 1.19833 1.04943 0.93424 1.27859 0.91601 1.27237 0.99328 0.93541 0.97816 1.69573 1.38020 1.01286 1.36510 0.85403 0.77920 0.78944 0.77955 1.16516 1.20060 1.17823 0.89295 0.93894 0.94651 0.88054 0.86541 0.73218 0.84210 0.84161 0.87262 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 9.20 71.98 0.66 -3.63 15 2 C -0.14 -4.56 4.59 29.85 0.14 -4.42 15 3 C 0.37 17.20 7.06 27.75 0.20 17.40 15 4 O -0.52 -28.63 13.44 -3.36 -0.05 -28.67 15 5 C -0.34 -15.86 6.07 -18.50 -0.11 -15.97 15 6 C 0.20 7.60 6.71 22.92 0.15 7.76 15 7 O -0.50 -13.86 10.18 -88.73 -0.90 -14.77 15 8 C -0.27 -9.58 9.93 22.46 0.22 -9.36 15 9 C -0.03 -1.24 9.95 22.18 0.22 -1.02 15 10 C -0.28 -12.52 7.23 22.75 0.16 -12.36 15 11 C 0.11 5.70 5.21 -19.86 -0.10 5.59 15 12 C -0.43 -25.62 8.34 23.39 0.19 -25.42 15 13 H 0.07 4.44 6.26 -2.91 -0.02 4.42 15 14 C 0.04 2.07 5.47 85.40 0.47 2.54 15 15 N -0.83 -46.50 13.91 21.90 0.30 -46.19 15 16 Si 0.98 42.23 24.57 68.60 1.69 43.92 15 17 H -0.24 -9.40 6.40 99.48 0.64 -8.77 15 18 H -0.27 -11.05 7.11 99.48 0.71 -10.35 15 19 H -0.25 -11.19 7.05 99.48 0.70 -10.49 15 20 H 0.09 2.00 8.14 -2.39 -0.02 1.98 15 21 H 0.04 1.39 8.10 -2.39 -0.02 1.37 15 22 H 0.03 1.20 8.10 -2.38 -0.02 1.18 15 23 H 0.10 3.11 7.61 -2.39 -0.02 3.09 15 24 H 0.12 2.92 6.53 -2.39 -0.02 2.90 15 25 H 0.41 7.20 8.26 -74.06 -0.61 6.59 15 26 H 0.14 3.91 8.06 -2.91 -0.02 3.88 15 27 H 0.14 4.07 8.06 -2.91 -0.02 4.05 15 28 H 0.11 4.88 4.69 -2.91 -0.01 4.86 15 29 H 0.30 14.84 8.29 -92.71 -0.77 14.07 15 Total: -1.00 -69.55 244.52 3.74 -65.81 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.49 Total: 18.80 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 2.20 Total: -38.90 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.30 Total: -46.19 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.95 Total: -43.44 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.69 Total: 43.92 kcal Total: -69.55 3.74 -65.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306821079.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.856 kcal (2) G-P(sol) polarization free energy of solvation -69.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds