Wall clock time and date at job start Mon Mar 30 2020 02:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46630 * 2 1 4 4 O 1.21354 * 120.00370 * 359.97438 * 3 2 1 5 5 C 1.46514 * 119.99810 * 179.97438 * 3 2 1 6 6 C 1.39617 * 120.56113 * 354.53563 * 5 3 2 7 7 C 1.38189 * 120.18081 * 179.97438 * 6 5 3 8 8 C 1.38388 * 121.41873 * 0.04791 * 7 6 5 9 9 C 1.38322 * 121.16127 * 359.97438 * 8 7 6 10 10 O 1.35570 * 120.15184 * 179.70179 * 9 8 7 11 11 C 1.41507 * 119.69552 * 359.97438 * 9 8 7 12 12 C 1.40348 * 120.66359 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99612 * 139.39687 * 12 11 9 14 14 C 1.40449 * 119.99839 * 319.39317 * 12 11 9 15 15 N 1.30561 * 120.00091 * 343.43275 * 14 12 11 16 16 Si 1.86805 * 119.99719 * 163.42677 * 14 12 11 17 17 H 1.48493 * 109.47153 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46592 * 120.00365 * 16 14 12 19 19 H 1.48501 * 109.47254 * 240.00257 * 16 14 12 20 20 H 1.09006 * 109.46745 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47727 * 299.99839 * 1 2 3 22 22 H 1.09002 * 109.47111 * 60.00312 * 1 2 3 23 23 H 1.08999 * 109.47087 * 240.00128 * 2 1 3 24 24 H 1.08994 * 109.47230 * 120.00009 * 2 1 3 25 25 H 1.07991 * 119.91275 * 0.02562 * 6 5 3 26 26 H 1.07996 * 119.28577 * 180.02562 * 7 6 5 27 27 H 1.08003 * 119.41525 * 179.97438 * 8 7 6 28 28 H 0.96709 * 114.00138 * 84.13744 * 10 9 8 29 29 H 0.97005 * 119.99710 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2436 2.3432 -0.0005 5 6 3.4727 1.6886 0.0006 6 6 4.3893 0.6418 0.1156 7 6 5.7462 0.9033 0.1147 8 6 6.2321 2.1942 0.0023 9 6 5.3752 3.2738 -0.1143 10 8 5.8733 4.5305 -0.2172 11 6 3.9762 3.0611 -0.1198 12 6 3.0884 4.1417 -0.2365 13 1 2.2079 4.0527 -0.8557 14 6 3.3448 5.3388 0.4519 15 7 4.2030 5.3551 1.4357 16 14 2.4580 6.9075 -0.0402 17 1 1.5438 6.6241 -1.1755 18 1 1.6719 7.4143 1.1133 19 1 3.4531 7.9312 -0.4491 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 4.0370 -0.3751 0.2047 26 1 6.4425 0.0826 0.2041 27 1 7.2990 2.3616 0.0056 28 1 6.1209 4.7830 -1.1173 29 1 4.3804 6.1820 1.9109 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306821288.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:32 Heat of formation + Delta-G solvation = -65.767111 kcal Electronic energy + Delta-G solvation = -14774.665121 eV Core-core repulsion = 12241.771290 eV Total energy + Delta-G solvation = -2532.893831 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.58270 -37.30165 -34.80116 -33.61655 -32.09846 -29.88290 -28.79475 -25.54640 -24.01959 -21.60434 -20.68714 -18.55885 -17.54229 -16.39116 -15.32290 -14.91538 -14.55376 -14.45077 -14.10965 -13.47804 -13.02386 -12.69685 -12.30040 -11.77502 -11.68198 -11.30999 -11.18469 -10.99373 -10.84553 -10.56405 -10.46168 -10.44660 -10.02390 -9.37793 -8.93589 -8.17778 -7.44711 -7.21095 -6.83148 -4.39205 2.08245 2.76797 3.09781 3.16903 3.17954 3.74768 3.95679 4.62392 5.12400 5.33628 5.63138 5.66637 5.74564 5.96049 6.04541 6.22430 6.32601 6.42735 6.46613 6.62043 6.88006 7.01514 7.13155 7.34488 7.53250 7.70677 7.87121 8.05291 8.46381 8.59704 8.74322 9.04342 9.24774 10.13436 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.013515 C = 0.008904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.208496 B = 2071.348019 C = 3143.759545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.167 4.167 3 C 0.386 3.614 4 O -0.473 6.473 5 C -0.289 4.289 6 C -0.045 4.045 7 C -0.247 4.247 8 C -0.109 4.109 9 C 0.040 3.960 10 O -0.469 6.469 11 C 0.129 3.871 12 C -0.407 4.407 13 H 0.098 0.902 14 C 0.081 3.919 15 N -0.735 5.735 16 Si 0.910 3.090 17 H -0.258 1.258 18 H -0.274 1.274 19 H -0.272 1.272 20 H 0.048 0.952 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.348 0.652 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 -4.226 -2.886 5.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.205 4.205 3 C 0.269 3.731 4 O -0.353 6.353 5 C -0.291 4.291 6 C -0.063 4.063 7 C -0.266 4.266 8 C -0.128 4.128 9 C -0.005 4.005 10 O -0.274 6.274 11 C 0.124 3.876 12 C -0.433 4.433 13 H 0.116 0.884 14 C -0.144 4.144 15 N -0.357 5.357 16 Si 0.734 3.266 17 H -0.182 1.182 18 H -0.199 1.199 19 H -0.197 1.197 20 H 0.067 0.933 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.199 0.801 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.817 -3.599 -2.062 4.228 hybrid contribution 0.074 0.523 -0.501 0.728 sum -0.743 -3.076 -2.563 4.072 Atomic orbital electron populations 1.21533 0.95005 1.00251 1.02707 1.21942 0.96955 0.98562 1.03050 1.21765 0.88771 0.89204 0.73314 1.90448 1.58538 1.47060 1.39233 1.20936 0.92863 0.93859 1.21485 1.20858 0.93072 0.96437 0.95980 1.19992 0.94592 0.95204 1.16860 1.20987 0.97721 0.93071 1.01069 1.18572 0.90890 0.83003 1.08048 1.84985 1.83539 1.29266 1.29590 1.18845 0.91091 0.90966 0.86672 1.19776 1.06963 0.94760 1.21791 0.88420 1.26009 0.94147 1.00381 0.93857 1.69614 1.24025 1.29349 1.12688 0.86230 0.79856 0.80547 0.79993 1.18173 1.19907 1.19684 0.93341 0.92501 0.92559 0.89898 0.89949 0.88466 0.88927 0.88789 0.80086 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.20 37.16 0.34 -1.81 15 2 C -0.17 -2.86 5.11 -27.88 -0.14 -3.00 15 3 C 0.39 8.82 7.07 -30.98 -0.22 8.60 15 4 O -0.47 -12.20 13.58 5.49 0.07 -12.13 15 5 C -0.29 -7.05 6.06 -102.64 -0.62 -7.67 15 6 C -0.04 -0.96 9.47 -39.09 -0.37 -1.33 15 7 C -0.25 -5.28 9.97 -39.54 -0.39 -5.67 15 8 C -0.11 -2.48 9.91 -39.50 -0.39 -2.87 15 9 C 0.04 1.01 6.18 -38.31 -0.24 0.77 15 10 O -0.47 -11.18 10.45 -18.40 -0.19 -11.37 15 11 C 0.13 3.44 5.51 -104.45 -0.58 2.86 15 12 C -0.41 -11.07 7.39 -37.96 -0.28 -11.35 15 13 H 0.10 2.73 6.48 -52.49 -0.34 2.39 15 14 C 0.08 2.07 4.55 -17.26 -0.08 2.00 15 15 N -0.74 -19.59 11.13 55.57 0.62 -18.97 15 16 Si 0.91 19.39 29.59 -169.99 -5.03 14.36 15 17 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 20 H 0.05 0.61 8.14 -51.93 -0.42 0.18 15 21 H 0.06 0.94 8.10 -51.93 -0.42 0.52 15 22 H 0.06 0.91 8.10 -51.93 -0.42 0.49 15 23 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 24 H 0.08 1.28 7.93 -51.93 -0.41 0.87 15 25 H 0.10 1.74 7.01 -52.49 -0.37 1.37 15 26 H 0.09 1.71 8.06 -52.49 -0.42 1.29 15 27 H 0.09 1.92 8.06 -52.48 -0.42 1.49 15 28 H 0.35 6.67 9.06 45.56 0.41 7.09 15 29 H 0.28 6.89 8.29 -40.82 -0.34 6.55 15 LS Contribution 253.88 15.07 3.83 3.83 Total: -1.00 -30.31 253.88 -6.05 -36.35 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -2.37 Total: 7.41 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.97 Total: -19.48 kcal Atomic # 7 Polarization: -19.59 SS G_CDS: 0.62 Total: -18.97 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.12 Total: -23.50 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.31 -6.05 -36.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306821288.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.413 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds