Wall clock time and date at job start Mon Mar 30 2020 02:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46630 * 2 1 4 4 O 1.21354 * 120.00370 * 359.97438 * 3 2 1 5 5 C 1.46514 * 119.99810 * 179.97438 * 3 2 1 6 6 C 1.39617 * 120.56113 * 354.53563 * 5 3 2 7 7 C 1.38189 * 120.18081 * 179.97438 * 6 5 3 8 8 C 1.38388 * 121.41873 * 0.04791 * 7 6 5 9 9 C 1.38322 * 121.16127 * 359.97438 * 8 7 6 10 10 O 1.35570 * 120.15184 * 179.70179 * 9 8 7 11 11 C 1.41507 * 119.69552 * 359.97438 * 9 8 7 12 12 C 1.40348 * 120.66359 * 179.97438 * 11 9 8 13 13 H 1.07999 * 119.99612 * 139.39687 * 12 11 9 14 14 C 1.40449 * 119.99839 * 319.39317 * 12 11 9 15 15 N 1.30561 * 120.00091 * 343.43275 * 14 12 11 16 16 Si 1.86805 * 119.99719 * 163.42677 * 14 12 11 17 17 H 1.48493 * 109.47153 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46592 * 120.00365 * 16 14 12 19 19 H 1.48501 * 109.47254 * 240.00257 * 16 14 12 20 20 H 1.09006 * 109.46745 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47727 * 299.99839 * 1 2 3 22 22 H 1.09002 * 109.47111 * 60.00312 * 1 2 3 23 23 H 1.08999 * 109.47087 * 240.00128 * 2 1 3 24 24 H 1.08994 * 109.47230 * 120.00009 * 2 1 3 25 25 H 1.07991 * 119.91275 * 0.02562 * 6 5 3 26 26 H 1.07996 * 119.28577 * 180.02562 * 7 6 5 27 27 H 1.08003 * 119.41525 * 179.97438 * 8 7 6 28 28 H 0.96709 * 114.00138 * 84.13744 * 10 9 8 29 29 H 0.97005 * 119.99710 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2436 2.3432 -0.0005 5 6 3.4727 1.6886 0.0006 6 6 4.3893 0.6418 0.1156 7 6 5.7462 0.9033 0.1147 8 6 6.2321 2.1942 0.0023 9 6 5.3752 3.2738 -0.1143 10 8 5.8733 4.5305 -0.2172 11 6 3.9762 3.0611 -0.1198 12 6 3.0884 4.1417 -0.2365 13 1 2.2079 4.0527 -0.8557 14 6 3.3448 5.3388 0.4519 15 7 4.2030 5.3551 1.4357 16 14 2.4580 6.9075 -0.0402 17 1 1.5438 6.6241 -1.1755 18 1 1.6719 7.4143 1.1133 19 1 3.4531 7.9312 -0.4491 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 4.0370 -0.3751 0.2047 26 1 6.4425 0.0826 0.2041 27 1 7.2990 2.3616 0.0056 28 1 6.1209 4.7830 -1.1173 29 1 4.3804 6.1820 1.9109 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306821288.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:32 Heat of formation + Delta-G solvation = -85.699738 kcal Electronic energy + Delta-G solvation = -14775.529465 eV Core-core repulsion = 12241.771290 eV Total energy + Delta-G solvation = -2533.758174 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.37265 -39.10454 -36.59589 -35.47772 -33.56257 -31.71896 -30.55055 -27.35461 -25.63572 -23.27685 -22.46641 -20.27290 -19.41726 -18.15770 -17.14634 -16.62617 -16.21647 -16.05101 -15.86914 -15.19588 -14.78857 -14.45999 -13.97470 -13.53849 -13.07023 -12.98883 -12.77281 -12.64354 -12.50444 -12.25522 -12.16278 -11.90526 -11.77255 -11.19845 -10.78178 -9.96173 -9.26636 -9.04964 -8.69320 -6.33918 0.27632 0.98422 1.33653 1.45403 1.48480 1.98961 2.20084 2.77439 3.51440 3.55451 4.03165 4.28243 4.37422 4.41269 4.52614 4.78946 4.80436 5.01406 5.09992 5.15499 5.25968 5.28241 5.38100 5.57726 5.76679 5.91243 6.03184 6.28354 6.57298 6.71473 6.86119 7.28378 7.50334 8.29895 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.023074 B = 0.013515 C = 0.008904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.208496 B = 2071.348019 C = 3143.759545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.157 4.157 3 C 0.376 3.624 4 O -0.513 6.513 5 C -0.313 4.313 6 C -0.042 4.042 7 C -0.238 4.238 8 C -0.112 4.112 9 C 0.013 3.987 10 O -0.482 6.482 11 C 0.095 3.905 12 C -0.448 4.448 13 H 0.073 0.927 14 C 0.047 3.953 15 N -0.778 5.778 16 Si 0.973 3.027 17 H -0.266 1.266 18 H -0.270 1.270 19 H -0.255 1.255 20 H 0.088 0.912 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.111 0.889 24 H 0.107 0.893 25 H 0.142 0.858 26 H 0.133 0.867 27 H 0.117 0.883 28 H 0.364 0.636 29 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 -6.462 -3.016 7.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.194 4.194 3 C 0.261 3.739 4 O -0.395 6.395 5 C -0.316 4.316 6 C -0.060 4.060 7 C -0.257 4.257 8 C -0.131 4.131 9 C -0.032 4.032 10 O -0.288 6.288 11 C 0.091 3.909 12 C -0.475 4.475 13 H 0.091 0.909 14 C -0.174 4.174 15 N -0.401 5.401 16 Si 0.795 3.205 17 H -0.190 1.190 18 H -0.195 1.195 19 H -0.179 1.179 20 H 0.106 0.894 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.129 0.871 24 H 0.125 0.875 25 H 0.160 0.840 26 H 0.151 0.849 27 H 0.135 0.865 28 H 0.216 0.784 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.260 -5.853 -2.202 6.259 hybrid contribution -0.016 0.975 -0.483 1.088 sum -0.275 -4.878 -2.684 5.575 Atomic orbital electron populations 1.21537 0.94072 1.02343 1.01320 1.21929 0.97759 0.94299 1.05404 1.22612 0.88108 0.91645 0.71491 1.90434 1.59229 1.49177 1.40702 1.21534 0.94810 0.94036 1.21183 1.21296 0.92715 0.97716 0.94294 1.20547 0.95447 0.95674 1.14044 1.21354 0.98746 0.93164 0.99834 1.18806 0.90867 0.83953 1.09541 1.84920 1.83447 1.29404 1.31066 1.19369 0.92207 0.92262 0.87071 1.19667 1.07140 0.96705 1.24034 0.90881 1.26649 0.94704 1.02736 0.93263 1.69648 1.26292 1.30193 1.13926 0.85304 0.78836 0.77176 0.79233 1.19027 1.19497 1.17877 0.89356 0.94147 0.93876 0.87093 0.87456 0.83991 0.84932 0.86513 0.78363 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.20 71.98 0.66 -3.25 15 2 C -0.16 -4.85 5.11 29.85 0.15 -4.70 15 3 C 0.38 17.03 7.07 27.84 0.20 17.23 15 4 O -0.51 -27.36 13.58 -3.26 -0.04 -27.40 15 5 C -0.31 -15.11 6.06 -18.58 -0.11 -15.23 15 6 C -0.04 -1.66 9.47 22.59 0.21 -1.45 15 7 C -0.24 -9.26 9.97 22.29 0.22 -9.04 15 8 C -0.11 -4.86 9.91 22.33 0.22 -4.64 15 9 C 0.01 0.68 6.18 23.10 0.14 0.83 15 10 O -0.48 -23.46 10.45 -88.77 -0.93 -24.38 15 11 C 0.09 5.20 5.51 -19.75 -0.11 5.09 15 12 C -0.45 -25.62 7.39 23.32 0.17 -25.45 15 13 H 0.07 4.38 6.48 -2.91 -0.02 4.36 15 14 C 0.05 2.50 4.55 85.42 0.39 2.88 15 15 N -0.78 -42.85 11.13 21.91 0.24 -42.61 15 16 Si 0.97 41.41 29.59 68.60 2.03 43.44 15 17 H -0.27 -11.46 7.11 99.48 0.71 -10.76 15 18 H -0.27 -11.16 7.11 99.48 0.71 -10.46 15 19 H -0.25 -10.00 7.11 99.48 0.71 -9.29 15 20 H 0.09 1.85 8.14 -2.38 -0.02 1.83 15 21 H 0.04 1.28 8.10 -2.39 -0.02 1.26 15 22 H 0.04 1.34 8.10 -2.39 -0.02 1.32 15 23 H 0.11 2.87 8.14 -2.39 -0.02 2.85 15 24 H 0.11 2.85 7.93 -2.39 -0.02 2.83 15 25 H 0.14 4.27 7.01 -2.92 -0.02 4.25 15 26 H 0.13 4.12 8.06 -2.91 -0.02 4.10 15 27 H 0.12 4.46 8.06 -2.91 -0.02 4.43 15 28 H 0.36 14.32 9.06 -74.05 -0.67 13.64 15 29 H 0.29 14.46 8.29 -92.70 -0.77 13.69 15 Total: -1.00 -68.58 253.88 3.95 -64.63 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.50 Total: 24.06 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 2.15 Total: -37.73 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.24 Total: -42.61 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.97 Total: -51.79 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -68.58 3.95 -64.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306821288.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.069 kcal (2) G-P(sol) polarization free energy of solvation -68.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds