Wall clock time and date at job start Mon Mar 30 2020 02:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86806 * 120.00191 * 2 1 4 4 H 1.48498 * 109.46807 * 240.00095 * 3 2 1 5 5 H 1.48494 * 109.46907 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47105 * 120.00089 * 3 2 1 7 7 C 1.39935 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00402 * 197.83626 * 7 2 1 9 9 C 1.41406 * 119.99740 * 17.83614 * 7 2 1 10 10 C 1.40787 * 120.20879 * 204.37107 * 9 7 2 11 11 C 1.37643 * 119.89194 * 179.97438 * 10 9 7 12 12 C 1.38520 * 120.32827 * 0.03979 * 11 10 9 13 13 C 1.39287 * 120.42422 * 359.97438 * 12 11 10 14 14 N 1.39687 * 119.95145 * 180.02562 * 13 12 11 15 15 C 1.46504 * 119.99904 * 359.97438 * 14 13 12 16 16 C 1.50706 * 109.46617 * 179.97438 * 15 14 13 17 17 N 1.34780 * 119.99161 * 179.97438 * 16 15 14 18 18 O 1.21277 * 120.00061 * 359.97438 * 16 15 14 19 19 C 1.38321 * 120.09722 * 0.02562 * 13 12 11 20 20 H 0.97003 * 119.99955 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.05330 * 0.02562 * 10 9 7 22 22 H 1.08005 * 119.83290 * 180.02562 * 11 10 9 23 23 H 1.08005 * 119.78766 * 180.02562 * 12 11 10 24 24 H 0.96998 * 120.00074 * 179.97438 * 14 13 12 25 25 H 1.08993 * 109.46877 * 299.99737 * 15 14 13 26 26 H 1.08992 * 109.46913 * 60.00384 * 15 14 13 27 27 H 0.96998 * 120.00355 * 0.02562 * 17 16 15 28 28 H 0.97008 * 119.99298 * 179.97438 * 17 16 15 29 29 H 1.08002 * 120.15968 * 179.72924 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2870 9 6 1.3519 -2.4072 -0.3740 10 6 1.8268 -3.6501 0.0863 11 6 1.1829 -4.8095 -0.2820 12 6 0.0694 -4.7602 -1.1045 13 6 -0.4117 -3.5380 -1.5679 14 7 -1.5357 -3.4998 -2.3964 15 6 -2.2072 -4.7447 -2.7779 16 6 -3.3819 -4.4295 -3.6678 17 7 -4.1526 -5.4270 -4.1447 18 8 -3.6336 -3.2783 -3.9546 19 6 0.2218 -2.3620 -1.2088 20 1 -0.4850 0.8401 0.0004 21 1 2.6944 -3.6936 0.7279 22 1 1.5477 -5.7624 0.0720 23 1 -0.4294 -5.6754 -1.3877 24 1 -1.8715 -2.6490 -2.7192 25 1 -1.5070 -5.3858 -3.3133 26 1 -2.5576 -5.2576 -1.8823 27 1 -3.9515 -6.3476 -3.9150 28 1 -4.9090 -5.2240 -4.7172 29 1 -0.1477 -1.4141 -1.5710 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307259268.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:13 Heat of formation + Delta-G solvation = -22.511992 kcal Electronic energy + Delta-G solvation = -14096.258648 eV Core-core repulsion = 11597.533252 eV Total energy + Delta-G solvation = -2498.725397 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.52163 -37.60415 -34.62025 -33.75203 -33.13625 -29.40272 -29.06650 -25.62732 -25.12241 -21.31954 -20.57306 -19.75026 -17.59887 -17.32632 -16.59616 -15.39150 -15.32154 -14.82390 -14.63977 -14.06330 -13.28776 -12.99968 -12.61639 -12.55144 -12.08089 -11.54054 -11.11007 -10.98995 -10.59487 -10.40610 -9.98136 -9.80913 -9.62146 -9.43636 -9.22751 -8.76893 -7.28869 -6.68511 -6.16828 -4.27457 2.60755 2.92158 3.13482 3.16249 3.25646 3.36945 3.38087 4.01839 4.42941 4.76053 4.90667 5.54720 5.59131 5.88453 6.26748 6.55734 6.64937 6.87770 7.08363 7.17563 7.20845 7.41457 7.47304 7.82480 7.97898 8.12245 8.18514 8.20894 8.51669 8.74644 8.86654 9.04868 9.14603 10.30274 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.033304 B = 0.007307 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.537220 B = 3831.078707 C = 4588.182169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.140 3.860 10 C -0.257 4.257 11 C -0.065 4.065 12 C -0.304 4.304 13 C 0.216 3.784 14 N -0.751 5.751 15 C 0.118 3.882 16 C 0.512 3.488 17 N -0.857 5.857 18 O -0.537 6.537 19 C -0.229 4.229 20 H 0.279 0.721 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.402 0.598 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.402 0.598 28 H 0.400 0.600 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 -8.074 -5.177 10.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.137 3.863 10 C -0.277 4.277 11 C -0.084 4.084 12 C -0.327 4.327 13 C 0.118 3.882 14 N -0.389 5.389 15 C -0.011 4.011 16 C 0.297 3.703 17 N -0.421 5.421 18 O -0.413 6.413 19 C -0.253 4.253 20 H 0.090 0.910 21 H 0.107 0.893 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.239 0.761 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.231 0.769 28 H 0.231 0.769 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.560 -7.288 -5.245 10.561 hybrid contribution -0.115 0.557 -0.189 0.599 sum -5.676 -6.731 -5.434 10.346 Atomic orbital electron populations 1.69852 1.07516 1.29037 1.35068 1.25894 0.94678 1.01135 0.92342 0.86425 0.80174 0.80538 0.79865 1.18911 1.20459 1.19102 1.19528 0.98067 0.91307 1.40584 0.90552 1.17313 0.90010 0.91881 0.87146 1.20866 1.04817 0.92920 1.09122 1.20266 0.95091 0.96263 0.96802 1.19852 1.04825 0.94127 1.13918 1.17621 0.86004 0.94535 0.90064 1.44181 1.31733 1.06033 1.56908 1.20781 0.92128 0.90743 0.97475 1.20932 0.83992 0.85266 0.80128 1.43791 1.33676 1.10029 1.54628 1.90737 1.71334 1.20511 1.58742 1.20735 1.02493 0.95119 1.06927 0.91012 0.89337 0.89582 0.89720 0.76128 0.90234 0.90222 0.76947 0.76904 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.22 10.95 55.55 0.61 -20.61 15 2 C 0.08 2.01 5.14 -17.34 -0.09 1.93 15 3 Si 0.91 19.31 29.60 -169.99 -5.03 14.28 15 4 H -0.26 -5.61 7.11 56.52 0.40 -5.20 15 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 7 C -0.47 -12.76 9.05 -37.74 -0.34 -13.10 15 8 H 0.08 2.00 7.91 -52.49 -0.41 1.59 15 9 C 0.14 3.86 5.57 -106.85 -0.60 3.26 15 10 C -0.26 -6.52 9.79 -38.84 -0.38 -6.90 15 11 C -0.07 -1.50 10.01 -39.69 -0.40 -1.90 15 12 C -0.30 -6.84 9.32 -39.09 -0.36 -7.20 15 13 C 0.22 5.17 6.64 -83.86 -0.56 4.61 15 14 N -0.75 -15.37 5.70 -59.86 -0.34 -15.71 15 15 C 0.12 1.78 5.39 -5.19 -0.03 1.75 15 16 C 0.51 7.24 8.17 -10.98 -0.09 7.16 15 17 N -0.86 -7.41 8.87 31.22 0.28 -7.14 15 18 O -0.54 -10.05 16.50 5.56 0.09 -9.96 15 19 C -0.23 -6.17 8.53 -38.67 -0.33 -6.50 15 20 H 0.28 6.89 8.30 -40.82 -0.34 6.55 15 21 H 0.09 2.12 8.06 -52.49 -0.42 1.70 15 22 H 0.09 1.70 8.06 -52.48 -0.42 1.28 15 23 H 0.08 1.63 6.70 -52.48 -0.35 1.28 15 24 H 0.40 8.65 7.44 -40.82 -0.30 8.35 15 25 H 0.08 1.08 7.94 -51.93 -0.41 0.66 15 26 H 0.08 1.11 7.94 -51.93 -0.41 0.69 15 27 H 0.40 2.14 8.83 -40.82 -0.36 1.78 15 28 H 0.40 2.98 8.93 -40.82 -0.36 2.62 15 29 H 0.12 3.32 6.16 -52.49 -0.32 3.00 15 LS Contribution 256.83 15.07 3.87 3.87 Total: -1.00 -31.83 256.83 -6.62 -38.45 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -2.92 Total: 13.70 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -3.17 Total: -16.89 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.54 Total: -43.45 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.83 -6.62 -38.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307259268.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.936 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds