Wall clock time and date at job start Mon Mar 30 2020 02:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86806 * 120.00191 * 2 1 4 4 H 1.48498 * 109.46807 * 240.00095 * 3 2 1 5 5 H 1.48494 * 109.46907 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47105 * 120.00089 * 3 2 1 7 7 C 1.39935 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00402 * 197.83626 * 7 2 1 9 9 C 1.41406 * 119.99740 * 17.83614 * 7 2 1 10 10 C 1.40787 * 120.20879 * 204.37107 * 9 7 2 11 11 C 1.37643 * 119.89194 * 179.97438 * 10 9 7 12 12 C 1.38520 * 120.32827 * 0.03979 * 11 10 9 13 13 C 1.39287 * 120.42422 * 359.97438 * 12 11 10 14 14 N 1.39687 * 119.95145 * 180.02562 * 13 12 11 15 15 C 1.46504 * 119.99904 * 359.97438 * 14 13 12 16 16 C 1.50706 * 109.46617 * 179.97438 * 15 14 13 17 17 N 1.34780 * 119.99161 * 179.97438 * 16 15 14 18 18 O 1.21277 * 120.00061 * 359.97438 * 16 15 14 19 19 C 1.38321 * 120.09722 * 0.02562 * 13 12 11 20 20 H 0.97003 * 119.99955 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.05330 * 0.02562 * 10 9 7 22 22 H 1.08005 * 119.83290 * 180.02562 * 11 10 9 23 23 H 1.08005 * 119.78766 * 180.02562 * 12 11 10 24 24 H 0.96998 * 120.00074 * 179.97438 * 14 13 12 25 25 H 1.08993 * 109.46877 * 299.99737 * 15 14 13 26 26 H 1.08992 * 109.46913 * 60.00384 * 15 14 13 27 27 H 0.96998 * 120.00355 * 0.02562 * 17 16 15 28 28 H 0.97008 * 119.99298 * 179.97438 * 17 16 15 29 29 H 1.08002 * 120.15968 * 179.72924 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2870 9 6 1.3519 -2.4072 -0.3740 10 6 1.8268 -3.6501 0.0863 11 6 1.1829 -4.8095 -0.2820 12 6 0.0694 -4.7602 -1.1045 13 6 -0.4117 -3.5380 -1.5679 14 7 -1.5357 -3.4998 -2.3964 15 6 -2.2072 -4.7447 -2.7779 16 6 -3.3819 -4.4295 -3.6678 17 7 -4.1526 -5.4270 -4.1447 18 8 -3.6336 -3.2783 -3.9546 19 6 0.2218 -2.3620 -1.2088 20 1 -0.4850 0.8401 0.0004 21 1 2.6944 -3.6936 0.7279 22 1 1.5477 -5.7624 0.0720 23 1 -0.4294 -5.6754 -1.3877 24 1 -1.8715 -2.6490 -2.7192 25 1 -1.5070 -5.3858 -3.3133 26 1 -2.5576 -5.2576 -1.8823 27 1 -3.9515 -6.3476 -3.9150 28 1 -4.9090 -5.2240 -4.7172 29 1 -0.1477 -1.4141 -1.5710 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307259268.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:13 Heat of formation + Delta-G solvation = -47.042494 kcal Electronic energy + Delta-G solvation = -14097.322371 eV Core-core repulsion = 11597.533252 eV Total energy + Delta-G solvation = -2499.789119 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.72537 -39.39047 -36.34141 -34.98905 -34.73557 -31.32661 -30.67234 -27.19420 -27.02117 -23.04881 -22.06188 -21.34350 -19.11954 -18.69987 -17.93371 -17.04790 -16.50089 -16.48775 -16.27196 -15.79136 -14.77648 -14.43829 -14.35118 -14.19718 -13.81578 -13.35004 -12.87406 -12.73375 -12.46238 -12.11808 -11.54678 -11.31154 -11.18566 -11.08817 -10.74625 -10.52791 -9.23779 -8.61412 -7.94294 -6.31242 1.10723 1.33901 1.37960 1.49875 1.52069 1.60127 2.22977 2.31894 2.82487 2.96055 3.87645 3.98223 4.37124 4.48534 4.56101 4.81610 5.01407 5.20235 5.31052 5.44089 5.57111 5.84359 5.94484 6.11507 6.22040 6.25676 6.38722 6.58884 6.92513 7.00897 7.07372 7.21332 7.28247 8.38797 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.033304 B = 0.007307 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.537220 B = 3831.078707 C = 4588.182169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.034 3.966 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.108 3.892 10 C -0.283 4.283 11 C -0.060 4.060 12 C -0.298 4.298 13 C 0.218 3.782 14 N -0.755 5.755 15 C 0.111 3.889 16 C 0.514 3.486 17 N -0.825 5.825 18 O -0.592 6.592 19 C -0.264 4.264 20 H 0.284 0.716 21 H 0.092 0.908 22 H 0.126 0.874 23 H 0.127 0.873 24 H 0.393 0.607 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.423 0.577 28 H 0.411 0.589 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.789 -10.021 -5.635 12.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.535 4.535 8 H 0.092 0.908 9 C 0.105 3.895 10 C -0.304 4.304 11 C -0.079 4.079 12 C -0.321 4.321 13 C 0.117 3.883 14 N -0.390 5.390 15 C -0.016 4.016 16 C 0.298 3.702 17 N -0.390 5.390 18 O -0.472 6.472 19 C -0.288 4.288 20 H 0.094 0.906 21 H 0.110 0.890 22 H 0.143 0.857 23 H 0.145 0.855 24 H 0.228 0.772 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.255 0.745 28 H 0.243 0.757 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.083 -9.334 -5.724 12.526 hybrid contribution -0.073 0.946 -0.103 0.954 sum -6.156 -8.388 -5.827 11.925 Atomic orbital electron populations 1.69933 1.09038 1.30133 1.35896 1.26762 0.95445 1.04489 0.91332 0.85295 0.78782 0.75793 0.80046 1.18658 1.19435 1.18106 1.19811 0.98323 0.92715 1.42663 0.90752 1.17698 0.90810 0.93089 0.87866 1.21056 1.05792 0.93310 1.10251 1.20702 0.94493 0.96983 0.95690 1.20295 1.04344 0.94909 1.12525 1.17760 0.86449 0.94243 0.89805 1.44319 1.30933 1.07822 1.55900 1.21105 0.92867 0.88703 0.98959 1.20800 0.84155 0.85224 0.79975 1.43492 1.32487 1.10063 1.52927 1.90732 1.72729 1.22833 1.60897 1.20667 1.03835 0.95499 1.08800 0.90580 0.89012 0.85660 0.85473 0.77235 0.87646 0.88031 0.74523 0.75659 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.13 10.95 21.82 0.24 -45.89 15 2 C 0.03 1.84 5.14 85.25 0.44 2.28 15 3 Si 0.98 40.61 29.60 68.60 2.03 42.64 15 4 H -0.26 -10.65 7.11 99.48 0.71 -9.95 15 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 15 6 H -0.26 -10.16 7.11 99.48 0.71 -9.46 15 7 C -0.51 -28.90 9.05 23.46 0.21 -28.69 15 8 H 0.07 4.08 7.91 -2.91 -0.02 4.06 15 9 C 0.11 6.19 5.57 -21.31 -0.12 6.07 15 10 C -0.28 -14.48 9.79 22.75 0.22 -14.25 15 11 C -0.06 -2.62 10.01 22.20 0.22 -2.40 15 12 C -0.30 -12.53 9.32 22.59 0.21 -12.32 15 13 C 0.22 10.32 6.64 38.16 0.25 10.57 15 14 N -0.76 -30.31 5.70 -343.30 -1.96 -32.27 15 15 C 0.11 3.02 5.39 85.63 0.46 3.48 15 16 C 0.51 13.38 8.17 87.66 0.72 14.10 15 17 N -0.82 -11.42 8.87 -173.53 -1.54 -12.96 15 18 O -0.59 -21.84 16.50 -3.02 -0.05 -21.89 15 19 C -0.26 -14.73 8.53 22.86 0.19 -14.54 15 20 H 0.28 14.53 8.30 -92.71 -0.77 13.76 15 21 H 0.09 4.46 8.06 -2.91 -0.02 4.43 15 22 H 0.13 4.43 8.06 -2.91 -0.02 4.41 15 23 H 0.13 4.21 6.70 -2.91 -0.02 4.19 15 24 H 0.39 17.26 7.44 -92.71 -0.69 16.57 15 25 H 0.11 2.37 7.94 -2.39 -0.02 2.36 15 26 H 0.10 2.37 7.94 -2.39 -0.02 2.35 15 27 H 0.42 2.61 8.83 -92.71 -0.82 1.79 15 28 H 0.41 4.81 8.93 -92.70 -0.83 3.99 15 29 H 0.09 5.51 6.16 -2.91 -0.02 5.50 15 Total: -1.00 -72.38 256.83 0.40 -71.98 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -1.13 Total: 34.08 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 2.81 Total: -35.70 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -3.26 Total: -91.12 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.05 Total: -21.89 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -72.38 0.40 -71.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307259268.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.937 kcal (2) G-P(sol) polarization free energy of solvation -72.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds