Wall clock time and date at job start Mon Mar 30 2020 02:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20755 * 120.00136 * 2 1 4 4 C 1.50706 * 119.99872 * 180.02562 * 2 1 3 5 5 C 1.50701 * 109.46702 * 179.97438 * 4 2 1 6 6 C 1.38823 * 119.70049 * 270.01604 * 5 4 2 7 7 C 1.36493 * 120.53599 * 179.71661 * 6 5 4 8 8 C 1.40721 * 119.92798 * 0.52340 * 7 6 5 9 9 C 1.41159 * 120.29058 * 179.76068 * 8 7 6 10 10 H 1.08002 * 119.99755 * 154.42554 * 9 8 7 11 11 C 1.39926 * 119.99787 * 334.43021 * 9 8 7 12 12 N 1.30865 * 120.00052 * 334.65814 * 11 9 8 13 13 Si 1.86799 * 120.00070 * 154.66119 * 11 9 8 14 14 H 1.48504 * 109.47419 * 180.02562 * 13 11 9 15 15 H 1.48505 * 109.47096 * 299.99555 * 13 11 9 16 16 H 1.48497 * 109.47317 * 59.99505 * 13 11 9 17 17 C 1.41321 * 119.42279 * 359.48221 * 8 7 6 18 18 O 1.35642 * 120.26948 * 180.23435 * 17 8 7 19 19 C 1.38305 * 119.70584 * 90.00214 * 5 4 2 20 20 H 1.08998 * 109.46748 * 239.99661 * 1 2 3 21 21 H 1.08991 * 109.46929 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46746 * 120.00148 * 1 2 3 23 23 H 1.08995 * 109.47409 * 59.99811 * 4 2 1 24 24 H 1.08997 * 109.46670 * 299.99472 * 4 2 1 25 25 H 1.07997 * 119.73005 * 359.97438 * 6 5 4 26 26 H 1.07998 * 120.03218 * 180.25951 * 7 6 5 27 27 H 0.97001 * 120.00173 * 354.20108 * 12 11 9 28 28 H 0.96692 * 113.99896 * 89.99993 * 18 17 8 29 29 H 1.07993 * 119.97215 * 0.03526 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2606 -1.3052 -0.0006 5 6 3.7422 -1.0297 -0.0011 6 6 4.4179 -0.9034 -1.2072 7 6 5.7586 -0.6482 -1.2276 8 6 6.4678 -0.5222 -0.0186 9 6 7.8554 -0.2634 -0.0308 10 1 8.3201 0.2296 0.8103 11 6 8.6287 -0.6455 -1.1326 12 7 8.2367 -1.6334 -1.8961 13 14 10.2206 0.2545 -1.5136 14 1 10.8468 -0.3375 -2.7230 15 1 9.9310 1.6902 -1.7592 16 1 11.1493 0.1269 -0.3619 17 6 5.7775 -0.6513 1.2078 18 8 6.4432 -0.5283 2.3832 19 6 4.4165 -0.9048 1.2000 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3633 1.0276 0.0005 22 1 -0.3633 -0.5139 -0.8900 23 1 1.9972 -1.8764 -0.8908 24 1 1.9972 -1.8770 0.8892 25 1 3.8776 -1.0037 -2.1369 26 1 6.2754 -0.5473 -2.1705 27 1 7.4562 -2.1550 -1.6518 28 1 6.4748 0.3759 2.7245 29 1 3.8809 -1.0052 2.1324 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307307375.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:47 Heat of formation + Delta-G solvation = -79.739144 kcal Electronic energy + Delta-G solvation = -14355.020951 eV Core-core repulsion = 11821.521248 eV Total energy + Delta-G solvation = -2533.499703 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.20787 -38.03688 -35.43352 -34.20657 -31.40746 -29.79954 -28.61695 -27.31164 -24.07639 -21.15263 -20.68769 -19.13078 -18.00593 -16.60029 -15.35957 -15.25192 -14.93004 -14.47936 -14.35956 -13.87825 -13.70409 -12.63556 -12.39847 -12.29060 -12.17778 -11.87647 -11.50231 -11.30253 -10.82946 -10.70148 -10.41885 -10.31688 -9.74107 -9.28807 -9.21011 -8.82749 -7.60219 -7.47833 -7.14965 -4.41131 2.37233 2.65600 2.75399 3.15762 3.24850 3.36213 4.01104 4.34840 4.66404 5.19972 5.28803 5.38370 5.46346 5.65534 5.75451 5.81556 6.11233 6.14481 6.23395 6.40119 6.91736 7.05621 7.32186 7.51478 7.67574 7.76699 7.87654 7.96133 8.11150 8.20677 8.55059 8.79783 9.11772 10.01914 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.044600 B = 0.007471 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.658186 B = 3746.805720 C = 4010.077574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.343 3.657 3 O -0.445 6.445 4 C -0.104 4.104 5 C -0.210 4.210 6 C -0.072 4.072 7 C -0.208 4.208 8 C 0.079 3.921 9 C -0.502 4.502 10 H 0.078 0.922 11 C 0.037 3.963 12 N -0.793 5.793 13 Si 1.067 2.933 14 H -0.273 1.273 15 H -0.274 1.274 16 H -0.275 1.275 17 C -0.029 4.029 18 O -0.492 6.492 19 C -0.085 4.085 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.300 0.700 28 H 0.352 0.648 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 0.737 1.397 8.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.217 3.783 3 O -0.317 6.317 4 C -0.142 4.142 5 C -0.211 4.211 6 C -0.091 4.091 7 C -0.228 4.228 8 C 0.076 3.924 9 C -0.529 4.529 10 H 0.096 0.904 11 C -0.185 4.185 12 N -0.416 5.416 13 Si 0.890 3.110 14 H -0.198 1.198 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.075 4.075 18 O -0.298 6.298 19 C -0.104 4.104 20 H 0.105 0.895 21 H 0.093 0.907 22 H 0.105 0.895 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.126 0.874 27 H 0.113 0.887 28 H 0.204 0.796 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.100 0.710 0.201 7.138 hybrid contribution -1.553 0.295 1.199 1.984 sum -8.653 1.005 1.401 8.823 Atomic orbital electron populations 1.22359 0.95690 1.04196 1.03968 1.24880 0.91011 0.91351 0.71010 1.90408 1.71986 1.35040 1.34273 1.20766 0.94327 0.95922 1.03146 1.18394 0.92402 1.17242 0.93072 1.20164 0.94485 0.99092 0.95348 1.20750 0.93702 1.10858 0.97454 1.17974 0.93984 0.89807 0.90649 1.20459 0.93056 1.34481 1.04940 0.90355 1.27084 1.04409 0.95194 0.91825 1.70463 1.23806 1.11205 1.36084 0.83621 0.73655 0.76368 0.77373 1.19796 1.19969 1.20033 1.18486 0.90075 1.14350 0.84547 1.84781 1.77370 1.30907 1.36774 1.20631 0.93226 1.00540 0.95970 0.89518 0.90674 0.89481 0.89309 0.89434 0.89352 0.87419 0.88658 0.79616 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 10.26 36.01 0.37 -1.79 15 2 C 0.34 5.45 7.26 -29.03 -0.21 5.24 15 3 O -0.44 -9.25 16.76 6.00 0.10 -9.15 15 4 C -0.10 -1.68 5.75 -29.03 -0.17 -1.85 15 5 C -0.21 -4.58 4.39 -104.38 -0.46 -5.04 15 6 C -0.07 -1.69 9.61 -39.99 -0.38 -2.08 15 7 C -0.21 -5.45 7.89 -39.27 -0.31 -5.76 15 8 C 0.08 2.18 5.31 -106.68 -0.57 1.61 15 9 C -0.50 -13.77 8.65 -37.84 -0.33 -14.09 15 10 H 0.08 2.11 7.72 -52.49 -0.41 1.70 15 11 C 0.04 0.96 4.94 -17.33 -0.09 0.87 15 12 N -0.79 -21.37 12.32 55.55 0.68 -20.69 15 13 Si 1.07 21.95 30.00 -169.99 -5.10 16.85 15 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 15 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 16 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 17 C -0.03 -0.76 6.74 -38.33 -0.26 -1.02 15 18 O -0.49 -11.83 12.80 -18.63 -0.24 -12.07 15 19 C -0.08 -1.98 9.62 -39.48 -0.38 -2.36 15 20 H 0.09 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.07 0.80 8.12 -51.93 -0.42 0.37 15 22 H 0.09 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.09 1.23 8.08 -51.93 -0.42 0.81 15 24 H 0.09 1.22 8.08 -51.93 -0.42 0.80 15 25 H 0.09 1.84 8.06 -52.49 -0.42 1.41 15 26 H 0.11 2.88 6.49 -52.49 -0.34 2.54 15 27 H 0.30 8.31 6.68 -40.82 -0.27 8.04 15 28 H 0.35 6.90 9.06 45.56 0.41 7.31 15 29 H 0.09 1.94 8.06 -52.49 -0.42 1.51 15 LS Contribution 260.26 15.07 3.92 3.92 Total: -1.00 -31.71 260.26 -5.76 -37.47 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -2.35 Total: 9.93 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -2.78 Total: -26.27 kcal Atomic # 7 Polarization: -21.37 SS G_CDS: 0.68 Total: -20.69 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.14 Total: -21.22 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.10 Total: 16.85 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.71 -5.76 -37.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307307375.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.265 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds