Wall clock time and date at job start Mon Mar 30 2020 02:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20755 * 120.00136 * 2 1 4 4 C 1.50706 * 119.99872 * 180.02562 * 2 1 3 5 5 C 1.50701 * 109.46702 * 179.97438 * 4 2 1 6 6 C 1.38823 * 119.70049 * 270.01604 * 5 4 2 7 7 C 1.36493 * 120.53599 * 179.71661 * 6 5 4 8 8 C 1.40721 * 119.92798 * 0.52340 * 7 6 5 9 9 C 1.41159 * 120.29058 * 179.76068 * 8 7 6 10 10 H 1.08002 * 119.99755 * 154.42554 * 9 8 7 11 11 C 1.39926 * 119.99787 * 334.43021 * 9 8 7 12 12 N 1.30865 * 120.00052 * 334.65814 * 11 9 8 13 13 Si 1.86799 * 120.00070 * 154.66119 * 11 9 8 14 14 H 1.48504 * 109.47419 * 180.02562 * 13 11 9 15 15 H 1.48505 * 109.47096 * 299.99555 * 13 11 9 16 16 H 1.48497 * 109.47317 * 59.99505 * 13 11 9 17 17 C 1.41321 * 119.42279 * 359.48221 * 8 7 6 18 18 O 1.35642 * 120.26948 * 180.23435 * 17 8 7 19 19 C 1.38305 * 119.70584 * 90.00214 * 5 4 2 20 20 H 1.08998 * 109.46748 * 239.99661 * 1 2 3 21 21 H 1.08991 * 109.46929 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46746 * 120.00148 * 1 2 3 23 23 H 1.08995 * 109.47409 * 59.99811 * 4 2 1 24 24 H 1.08997 * 109.46670 * 299.99472 * 4 2 1 25 25 H 1.07997 * 119.73005 * 359.97438 * 6 5 4 26 26 H 1.07998 * 120.03218 * 180.25951 * 7 6 5 27 27 H 0.97001 * 120.00173 * 354.20108 * 12 11 9 28 28 H 0.96692 * 113.99896 * 89.99993 * 18 17 8 29 29 H 1.07993 * 119.97215 * 0.03526 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2606 -1.3052 -0.0006 5 6 3.7422 -1.0297 -0.0011 6 6 4.4179 -0.9034 -1.2072 7 6 5.7586 -0.6482 -1.2276 8 6 6.4678 -0.5222 -0.0186 9 6 7.8554 -0.2634 -0.0308 10 1 8.3201 0.2296 0.8103 11 6 8.6287 -0.6455 -1.1326 12 7 8.2367 -1.6334 -1.8961 13 14 10.2206 0.2545 -1.5136 14 1 10.8468 -0.3375 -2.7230 15 1 9.9310 1.6902 -1.7592 16 1 11.1493 0.1269 -0.3619 17 6 5.7775 -0.6513 1.2078 18 8 6.4432 -0.5283 2.3832 19 6 4.4165 -0.9048 1.2000 20 1 -0.3633 -0.5139 0.8900 21 1 -0.3633 1.0276 0.0005 22 1 -0.3633 -0.5139 -0.8900 23 1 1.9972 -1.8764 -0.8908 24 1 1.9972 -1.8770 0.8892 25 1 3.8776 -1.0037 -2.1369 26 1 6.2754 -0.5473 -2.1705 27 1 7.4562 -2.1550 -1.6518 28 1 6.4748 0.3759 2.7245 29 1 3.8809 -1.0052 2.1324 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307307375.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:46 Heat of formation + Delta-G solvation = -101.528997 kcal Electronic energy + Delta-G solvation = -14355.965830 eV Core-core repulsion = 11821.521248 eV Total energy + Delta-G solvation = -2534.444582 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73397 -39.77002 -37.32412 -36.07383 -32.94703 -31.16066 -30.53181 -28.88648 -25.86767 -23.07977 -22.47181 -20.46391 -19.95694 -18.43046 -16.87860 -16.68082 -16.60047 -16.16910 -15.84698 -15.52863 -15.37395 -14.51706 -14.26216 -13.75119 -13.25800 -13.10591 -13.06075 -12.84090 -12.52833 -12.42278 -12.13182 -11.96397 -11.64277 -11.08980 -10.83511 -10.52357 -9.52055 -9.44337 -9.12213 -6.44661 0.76454 0.82208 1.17269 1.47343 1.60352 1.77384 2.30244 2.57464 3.23240 3.54613 3.79212 4.07070 4.22447 4.34545 4.49056 4.54511 4.76980 4.83148 4.85716 4.96770 5.13576 5.27379 5.36935 5.61261 5.70737 5.78459 5.95011 6.13945 6.30971 6.60042 6.77122 6.82845 7.24208 7.98730 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.044600 B = 0.007471 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.658186 B = 3746.805720 C = 4010.077574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.348 3.652 3 O -0.508 6.508 4 C -0.110 4.110 5 C -0.190 4.190 6 C -0.084 4.084 7 C -0.226 4.226 8 C 0.045 3.955 9 C -0.545 4.545 10 H 0.070 0.930 11 C 0.001 3.999 12 N -0.815 5.815 13 Si 1.119 2.881 14 H -0.267 1.267 15 H -0.264 1.264 16 H -0.259 1.259 17 C -0.047 4.047 18 O -0.502 6.502 19 C -0.098 4.098 20 H 0.117 0.883 21 H 0.072 0.928 22 H 0.116 0.884 23 H 0.121 0.879 24 H 0.121 0.879 25 H 0.115 0.885 26 H 0.090 0.910 27 H 0.283 0.717 28 H 0.372 0.628 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.050 0.420 1.660 11.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.227 3.773 3 O -0.384 6.384 4 C -0.147 4.147 5 C -0.191 4.191 6 C -0.102 4.102 7 C -0.245 4.245 8 C 0.042 3.958 9 C -0.573 4.573 10 H 0.088 0.912 11 C -0.215 4.215 12 N -0.438 5.438 13 Si 0.935 3.065 14 H -0.192 1.192 15 H -0.189 1.189 16 H -0.183 1.183 17 C -0.092 4.092 18 O -0.310 6.310 19 C -0.117 4.117 20 H 0.135 0.865 21 H 0.091 0.909 22 H 0.135 0.865 23 H 0.139 0.861 24 H 0.139 0.861 25 H 0.133 0.867 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.225 0.775 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.448 0.376 0.484 9.468 hybrid contribution -1.089 0.343 1.216 1.668 sum -10.537 0.719 1.700 10.697 Atomic orbital electron populations 1.22315 0.90793 1.05091 1.06752 1.25442 0.93566 0.89825 0.68503 1.90424 1.73620 1.36804 1.37595 1.21002 0.89977 0.97357 1.06370 1.19085 0.95751 1.12589 0.91697 1.20547 0.93682 0.98570 0.97445 1.20772 0.95055 1.12155 0.96536 1.18344 0.94656 0.91002 0.91844 1.20596 0.93739 1.36913 1.06007 0.91192 1.28508 1.07027 0.94799 0.91118 1.70579 1.23855 1.12365 1.36992 0.82999 0.70074 0.75564 0.77859 1.19174 1.18884 1.18308 1.18827 0.91324 1.14527 0.84552 1.84686 1.77552 1.32630 1.36147 1.21001 0.92501 1.00282 0.97869 0.86481 0.90884 0.86527 0.86099 0.86142 0.86726 0.89154 0.90525 0.77451 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 10.26 71.24 0.73 -2.35 15 2 C 0.35 9.78 7.26 29.11 0.21 9.99 15 3 O -0.51 -20.35 16.76 -1.43 -0.02 -20.37 15 4 C -0.11 -3.06 5.75 29.10 0.17 -2.90 15 5 C -0.19 -7.92 4.39 -19.71 -0.09 -8.01 15 6 C -0.08 -3.90 9.61 22.00 0.21 -3.69 15 7 C -0.23 -12.21 7.89 22.47 0.18 -12.03 15 8 C 0.04 2.54 5.31 -21.20 -0.11 2.43 15 9 C -0.54 -31.23 8.65 23.40 0.20 -31.03 15 10 H 0.07 3.95 7.72 -2.91 -0.02 3.93 15 11 C 0.00 0.06 4.94 85.25 0.42 0.48 15 12 N -0.81 -45.77 12.32 21.83 0.27 -45.50 15 13 Si 1.12 45.14 30.00 68.60 2.06 47.20 15 14 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 15 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 16 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 17 C -0.05 -2.48 6.74 23.08 0.16 -2.32 15 18 O -0.50 -24.43 12.80 -89.56 -1.15 -25.58 15 19 C -0.10 -4.46 9.62 22.34 0.21 -4.25 15 20 H 0.12 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.07 1.26 8.12 -2.39 -0.02 1.24 15 22 H 0.12 1.26 8.14 -2.39 -0.02 1.24 15 23 H 0.12 2.68 8.08 -2.39 -0.02 2.66 15 24 H 0.12 2.66 8.08 -2.39 -0.02 2.64 15 25 H 0.11 4.59 8.06 -2.91 -0.02 4.57 15 26 H 0.09 5.09 6.49 -2.91 -0.02 5.07 15 27 H 0.28 16.53 6.68 -92.71 -0.62 15.91 15 28 H 0.37 14.73 9.06 -74.06 -0.67 14.06 15 29 H 0.12 4.67 8.06 -2.91 -0.02 4.65 15 Total: -1.00 -72.89 260.26 4.09 -68.79 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.64 Total: 29.12 kcal Atomic # 6 Polarization: -55.95 SS G_CDS: 2.29 Total: -53.66 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.27 Total: -45.50 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -1.17 Total: -45.95 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.06 Total: 47.20 kcal Total: -72.89 4.09 -68.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307307375.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.735 kcal (2) G-P(sol) polarization free energy of solvation -72.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds