Wall clock time and date at job start Mon Mar 30 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00142 * 2 1 4 4 H 1.48497 * 109.47319 * 270.00646 * 3 2 1 5 5 H 1.48504 * 109.46707 * 30.00117 * 3 2 1 6 6 H 1.48498 * 109.47207 * 150.00005 * 3 2 1 7 7 C 1.37874 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00523 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99680 * 179.97438 * 7 2 1 10 10 H 1.08996 * 110.33450 * 299.20367 * 9 7 2 11 11 C 1.54483 * 110.37172 * 176.82984 * 9 7 2 12 12 C 1.54500 * 104.06648 * 217.19294 * 11 9 7 13 13 C 1.54480 * 104.06470 * 0.02562 * 12 11 9 14 14 H 1.09004 * 110.46835 * 265.10481 * 13 12 11 15 15 C 1.50702 * 110.37229 * 142.80926 * 13 12 11 16 16 C 1.38619 * 120.44411 * 128.14568 * 15 13 12 17 17 C 1.38579 * 118.39836 * 180.02562 * 16 15 13 18 18 N 1.32347 * 119.10355 * 0.02562 * 17 16 15 19 19 C 1.31780 * 120.82081 * 0.02562 * 18 17 16 20 20 N 1.31814 * 121.75520 * 359.97438 * 19 18 17 21 21 O 1.44427 * 110.37289 * 61.45555 * 9 7 2 22 22 H 0.97007 * 120.00028 * 359.97438 * 1 2 3 23 23 H 1.09005 * 110.51164 * 335.84212 * 11 9 7 24 24 H 1.08999 * 110.50678 * 98.40846 * 11 9 7 25 25 H 1.09005 * 110.51087 * 241.35436 * 12 11 9 26 26 H 1.09000 * 110.51241 * 118.64590 * 12 11 9 27 27 H 1.07994 * 120.80481 * 0.04338 * 16 15 13 28 28 H 1.07992 * 120.44950 * 179.97438 * 17 16 15 29 29 H 1.07999 * 119.12293 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8899 -0.6951 -0.8933 11 6 4.0494 -2.6400 0.0784 12 6 5.2996 -2.5266 0.9790 13 6 5.3690 -1.0256 1.3377 14 1 6.0340 -0.5002 0.6522 15 6 5.8352 -0.8470 2.7596 16 6 6.8946 -0.0017 3.0506 17 6 7.2884 0.1305 4.3726 18 7 6.6448 -0.5505 5.3072 19 6 5.6422 -1.3460 4.9932 20 7 5.2401 -1.4965 3.7469 21 8 4.0147 -0.5473 1.1882 22 1 -0.4850 0.8401 0.0004 23 1 3.3092 -3.2983 0.5335 24 1 4.3219 -3.0011 -0.9132 25 1 6.1926 -2.8309 0.4329 26 1 5.1777 -3.1287 1.8794 27 1 7.4006 0.5411 2.2660 28 1 8.1100 0.7798 4.6366 29 1 5.1365 -1.8892 5.7778 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307356248.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:57 Heat of formation + Delta-G solvation = -14.777784 kcal Electronic energy + Delta-G solvation = -14686.408729 eV Core-core repulsion = 12188.018713 eV Total energy + Delta-G solvation = -2498.390016 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.00907 -39.96367 -35.22681 -34.49389 -33.33396 -32.75155 -30.62379 -27.22277 -25.37034 -24.52340 -22.57090 -21.67875 -19.26562 -18.51131 -18.04728 -16.98114 -16.44790 -16.30931 -16.03667 -15.54116 -15.17138 -14.74320 -14.46429 -14.43496 -13.60840 -12.89247 -12.73292 -12.53711 -12.07518 -11.86785 -11.75923 -11.62029 -11.43352 -11.31419 -10.77692 -10.58678 -10.24355 -10.14365 -8.36700 -6.49319 -0.08612 0.12153 1.34533 1.38783 1.65074 2.40435 2.67647 2.96326 3.08830 3.28171 3.45661 3.69127 3.93498 4.09595 4.18842 4.19841 4.34701 4.44591 4.61178 4.63516 4.85704 4.97081 5.02585 5.23742 5.40768 5.44935 5.51805 6.06819 6.19299 6.30926 6.65588 7.15470 7.26127 8.77877 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.033788 B = 0.009349 C = 0.008506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.506601 B = 2994.369301 C = 3290.834658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.023 3.977 3 Si 0.938 3.062 4 H -0.266 1.266 5 H -0.297 1.297 6 H -0.213 1.213 7 C -0.529 4.529 8 H 0.038 0.962 9 C 0.167 3.833 10 H 0.041 0.959 11 C -0.130 4.130 12 C -0.128 4.128 13 C 0.098 3.902 14 H 0.106 0.894 15 C 0.164 3.836 16 C -0.212 4.212 17 C 0.147 3.853 18 N -0.538 5.538 19 C 0.280 3.720 20 N -0.533 5.533 21 O -0.387 6.387 22 H 0.267 0.733 23 H 0.046 0.954 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.180 0.820 28 H 0.210 0.790 29 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.765 0.526 4.779 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.224 1.224 6 H -0.135 1.135 7 C -0.566 4.566 8 H 0.056 0.944 9 C 0.111 3.889 10 H 0.059 0.941 11 C -0.168 4.168 12 C -0.166 4.166 13 C 0.039 3.961 14 H 0.124 0.876 15 C 0.019 3.981 16 C -0.234 4.234 17 C -0.019 4.019 18 N -0.252 5.252 19 C -0.007 4.007 20 N -0.248 5.248 21 O -0.307 6.307 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.122 0.878 26 H 0.085 0.915 27 H 0.198 0.802 28 H 0.227 0.773 29 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 18.033 0.250 5.620 18.890 hybrid contribution -0.305 0.795 -0.677 1.088 sum 17.728 1.045 4.943 18.434 Atomic orbital electron populations 1.70066 1.08530 1.28423 1.51101 1.26016 0.95460 1.03838 0.92340 0.85946 0.81611 0.77291 0.79020 1.19150 1.22425 1.13508 1.21295 0.90536 0.93310 1.51500 0.94377 1.20901 0.92607 0.90541 0.84836 0.94123 1.22762 0.96473 0.97343 1.00204 1.22844 0.98759 0.94945 1.00067 1.22087 0.87732 0.96056 0.90196 0.87639 1.21741 0.90904 0.90507 0.94995 1.23108 0.99130 1.00240 1.00878 1.23903 0.96683 0.93327 0.87952 1.68466 1.09192 1.08635 1.38939 1.25409 0.90357 0.92610 0.92349 1.68203 1.29850 1.24865 1.01899 1.89518 1.25207 1.67586 1.48374 0.92397 0.93477 0.89468 0.87838 0.91529 0.80219 0.77300 0.77086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.74 13.96 21.45 0.30 -60.44 15 2 C 0.02 1.37 5.47 84.65 0.46 1.83 15 3 Si 0.94 45.92 27.08 68.60 1.86 47.77 15 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 5 H -0.30 -14.70 7.11 99.48 0.71 -13.99 15 6 H -0.21 -9.85 5.37 99.48 0.53 -9.32 15 7 C -0.53 -31.45 9.36 25.60 0.24 -31.21 15 8 H 0.04 2.49 7.84 -2.91 -0.02 2.47 15 9 C 0.17 7.88 2.52 30.35 0.08 7.96 15 10 H 0.04 1.82 7.64 -2.39 -0.02 1.80 15 11 C -0.13 -5.05 6.61 31.61 0.21 -4.84 15 12 C -0.13 -4.08 6.59 31.61 0.21 -3.87 15 13 C 0.10 3.32 3.63 30.35 0.11 3.43 15 14 H 0.11 2.86 7.99 -2.39 -0.02 2.84 15 15 C 0.16 5.22 5.94 42.58 0.25 5.47 15 16 C -0.21 -4.83 9.82 22.44 0.22 -4.61 15 17 C 0.15 3.01 11.30 84.70 0.96 3.97 15 18 N -0.54 -13.86 10.44 -200.05 -2.09 -15.95 15 19 C 0.28 8.03 12.29 180.88 2.22 10.25 15 20 N -0.53 -18.56 9.64 -188.07 -1.81 -20.37 15 21 O -0.39 -17.98 8.03 -148.98 -1.20 -19.17 15 22 H 0.27 16.10 8.31 -92.70 -0.77 15.33 15 23 H 0.05 2.04 7.73 -2.38 -0.02 2.02 15 24 H 0.09 2.87 8.14 -2.39 -0.02 2.85 15 25 H 0.10 2.45 8.14 -2.38 -0.02 2.43 15 26 H 0.07 2.26 7.32 -2.39 -0.02 2.24 15 27 H 0.18 2.73 8.03 -2.91 -0.02 2.70 15 28 H 0.21 2.27 8.06 -2.91 -0.02 2.25 15 29 H 0.21 4.80 8.06 -2.91 -0.02 4.77 15 Total: -1.00 -75.83 249.51 2.99 -72.84 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 0.97 Total: 6.94 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 4.96 Total: -11.62 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -3.60 Total: -96.76 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -1.20 Total: -19.17 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.86 Total: 47.77 kcal Total: -75.83 2.99 -72.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307356248.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.061 kcal (2) G-P(sol) polarization free energy of solvation -75.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds