Wall clock time and date at job start Mon Mar 30 2020 02:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47485 * 2 1 4 4 O 1.21339 * 119.99430 * 0.02562 * 3 2 1 5 5 C 1.46597 * 119.99967 * 179.97438 * 3 2 1 6 6 C 1.39538 * 120.62415 * 354.44645 * 5 3 2 7 7 C 1.38768 * 119.82793 * 179.81132 * 6 5 3 8 8 O 1.35676 * 119.42533 * 180.21431 * 7 6 5 9 9 C 1.39359 * 121.15700 * 0.45739 * 7 6 5 10 10 C 1.36224 * 121.31038 * 359.77587 * 9 7 6 11 11 C 1.40965 * 120.06174 * 0.02562 * 10 9 7 12 12 C 1.40485 * 120.55765 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99409 * 147.59072 * 12 11 10 14 14 C 1.40374 * 120.00140 * 327.59074 * 12 11 10 15 15 N 1.30588 * 120.00267 * 350.26763 * 14 12 11 16 16 Si 1.86800 * 119.99895 * 170.26014 * 14 12 11 17 17 H 1.48503 * 109.47390 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46837 * 120.00377 * 16 14 12 19 19 H 1.48495 * 109.47265 * 240.00214 * 16 14 12 20 20 H 1.09001 * 109.46685 * 299.99975 * 1 2 3 21 21 H 1.08995 * 109.46744 * 59.99769 * 1 2 3 22 22 H 1.08992 * 109.47042 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47177 * 240.00189 * 2 1 3 24 24 H 1.08997 * 109.47478 * 120.00339 * 2 1 3 25 25 H 1.07996 * 120.08121 * 0.02562 * 6 5 3 26 26 H 0.96704 * 114.00042 * 270.23784 * 8 7 6 27 27 H 1.07999 * 119.34866 * 179.76346 * 9 7 6 28 28 H 1.07991 * 119.97053 * 179.97438 * 10 9 7 29 29 H 0.96995 * 120.00366 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2439 2.3430 0.0005 5 6 3.4737 1.6886 0.0006 6 6 4.3909 0.6434 0.1173 7 6 5.7516 0.9154 0.1120 8 8 6.6362 -0.1075 0.2217 9 6 6.2255 2.2212 0.0012 10 6 5.3719 3.2770 -0.1105 11 6 3.9789 3.0613 -0.1151 12 6 3.0892 4.1425 -0.2292 13 1 2.1449 4.0134 -0.7373 14 6 3.4274 5.3906 0.3172 15 7 4.4729 5.5026 1.0917 16 14 2.3821 6.8911 -0.0636 17 1 1.2628 6.5007 -0.9582 18 1 1.8346 7.4466 1.2000 19 1 3.2175 7.9189 -0.7351 20 1 -0.3633 0.5138 0.8900 21 1 -0.3632 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 4.0425 -0.3748 0.2081 26 1 6.8767 -0.3236 1.1330 27 1 7.2906 2.3998 0.0040 28 1 5.7628 4.2801 -0.1948 29 1 4.7068 6.3650 1.4689 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307356451.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:37 Heat of formation + Delta-G solvation = -94.163779 kcal Electronic energy + Delta-G solvation = -14528.817484 eV Core-core repulsion = 11994.692282 eV Total energy + Delta-G solvation = -2534.125203 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.44189 -39.19700 -37.21971 -35.26798 -33.64763 -31.65940 -30.93742 -27.26308 -25.64683 -23.49205 -22.52503 -20.29679 -19.39448 -18.59727 -17.30773 -16.73578 -16.12097 -16.03901 -15.91809 -15.21962 -14.84047 -14.50146 -14.03009 -13.68951 -13.38251 -12.96363 -12.88797 -12.61371 -12.51798 -12.28500 -12.15076 -11.92628 -11.74605 -11.28392 -11.13801 -9.95934 -9.56606 -9.14019 -8.81306 -6.46179 0.25034 0.85628 1.32731 1.43257 1.48510 1.98624 2.14829 2.60499 3.46542 3.58413 3.86984 4.25118 4.34300 4.36852 4.41478 4.70601 4.99590 5.00111 5.08703 5.14079 5.16192 5.24336 5.37426 5.52226 5.61175 5.95401 5.96563 6.11738 6.50664 6.69549 6.77297 7.21524 7.28818 8.12211 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.020558 B = 0.012678 C = 0.008038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.701746 B = 2207.947551 C = 3482.484121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.158 4.158 3 C 0.381 3.619 4 O -0.512 6.512 5 C -0.315 4.315 6 C -0.052 4.052 7 C -0.048 4.048 8 O -0.505 6.505 9 C -0.102 4.102 10 C -0.170 4.170 11 C 0.106 3.894 12 C -0.437 4.437 13 H 0.088 0.912 14 C 0.030 3.970 15 N -0.803 5.803 16 Si 0.986 3.014 17 H -0.265 1.265 18 H -0.262 1.262 19 H -0.252 1.252 20 H 0.043 0.957 21 H 0.043 0.957 22 H 0.086 0.914 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.139 0.861 26 H 0.383 0.617 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 -5.644 0.388 5.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.196 4.196 3 C 0.266 3.734 4 O -0.394 6.394 5 C -0.318 4.318 6 C -0.070 4.070 7 C -0.093 4.093 8 O -0.314 6.314 9 C -0.122 4.122 10 C -0.189 4.189 11 C 0.103 3.897 12 C -0.464 4.464 13 H 0.106 0.894 14 C -0.187 4.187 15 N -0.428 5.428 16 Si 0.806 3.194 17 H -0.189 1.189 18 H -0.187 1.187 19 H -0.176 1.176 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.105 0.895 23 H 0.124 0.876 24 H 0.125 0.875 25 H 0.157 0.843 26 H 0.237 0.763 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.443 -5.027 -0.081 5.231 hybrid contribution 0.043 0.826 0.560 0.999 sum -1.400 -4.201 0.479 4.454 Atomic orbital electron populations 1.21532 0.93775 1.02375 1.01504 1.21930 0.97990 0.94423 1.05211 1.22503 0.87839 0.91594 0.71448 1.90403 1.59086 1.48935 1.40971 1.21367 0.94559 0.93707 1.22166 1.21418 0.91760 0.98096 0.95738 1.17951 0.88190 0.86550 1.16601 1.84765 1.62712 1.51238 1.32682 1.20996 0.99199 0.92550 0.99411 1.20916 0.93095 0.97858 1.07047 1.19123 0.92660 0.91837 0.86115 1.20249 1.03929 0.93891 1.28368 0.89435 1.27006 0.96225 1.03082 0.92422 1.69705 1.23555 1.28337 1.21199 0.85097 0.78691 0.76140 0.79504 1.18934 1.18671 1.17613 0.93791 0.93788 0.89475 0.87606 0.87496 0.84308 0.76287 0.86765 0.87375 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 9.20 71.98 0.66 -3.19 15 2 C -0.16 -4.97 5.12 29.85 0.15 -4.81 15 3 C 0.38 17.06 7.08 27.87 0.20 17.25 15 4 O -0.51 -26.48 13.41 -3.21 -0.04 -26.52 15 5 C -0.32 -15.28 6.06 -18.56 -0.11 -15.39 15 6 C -0.05 -2.15 9.40 22.71 0.21 -1.94 15 7 C -0.05 -2.04 6.69 22.67 0.15 -1.89 15 8 O -0.50 -17.87 13.46 -89.94 -1.21 -19.08 15 9 C -0.10 -4.66 9.84 22.07 0.22 -4.45 15 10 C -0.17 -8.75 8.58 22.47 0.19 -8.56 15 11 C 0.11 5.79 5.67 -19.84 -0.11 5.68 15 12 C -0.44 -24.32 7.85 23.34 0.18 -24.13 15 13 H 0.09 5.07 5.96 -2.91 -0.02 5.05 15 14 C 0.03 1.54 5.26 85.40 0.45 1.99 15 15 N -0.80 -40.91 11.05 21.90 0.24 -40.67 15 16 Si 0.99 39.21 29.57 68.60 2.03 41.24 15 17 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 18 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 19 H -0.25 -9.19 7.11 99.48 0.71 -8.49 15 20 H 0.04 1.35 8.10 -2.39 -0.02 1.33 15 21 H 0.04 1.35 8.10 -2.39 -0.02 1.33 15 22 H 0.09 1.83 8.14 -2.39 -0.02 1.81 15 23 H 0.11 2.90 8.14 -2.39 -0.02 2.88 15 24 H 0.11 2.88 7.93 -2.39 -0.02 2.86 15 25 H 0.14 4.68 7.03 -2.91 -0.02 4.66 15 26 H 0.38 9.72 9.06 -74.05 -0.67 9.05 15 27 H 0.11 4.63 8.06 -2.91 -0.02 4.61 15 28 H 0.11 5.72 6.48 -2.92 -0.02 5.71 15 29 H 0.30 13.39 8.29 -92.71 -0.77 12.63 15 Total: -1.00 -64.18 254.88 3.72 -60.46 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.50 Total: 24.00 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 2.20 Total: -39.44 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.24 Total: -40.67 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -1.25 Total: -45.60 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -64.18 3.72 -60.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307356451.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.703 kcal (2) G-P(sol) polarization free energy of solvation -64.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds