Wall clock time and date at job start Mon Mar 30 2020 02:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50700 * 109.47274 * 2 1 4 4 O 1.21290 * 120.00056 * 0.02562 * 3 2 1 5 5 C 1.46783 * 119.99979 * 180.02562 * 3 2 1 6 6 C 1.40162 * 120.11248 * 359.72637 * 5 3 2 7 7 C 1.38227 * 120.41839 * 179.68989 * 6 5 3 8 8 C 1.37837 * 120.65152 * 0.61714 * 7 6 5 9 9 C 1.40628 * 120.20396 * 359.66352 * 8 7 6 10 10 C 1.41139 * 120.21217 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99871 * 154.30001 * 10 9 8 12 12 C 1.39962 * 119.99865 * 334.30908 * 10 9 8 13 13 N 1.30843 * 120.00107 * 343.33821 * 12 10 9 14 14 Si 1.86798 * 119.99814 * 163.33971 * 12 10 9 15 15 H 1.48495 * 109.47320 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47227 * 119.99744 * 14 12 10 17 17 H 1.48502 * 109.46941 * 239.99944 * 14 12 10 18 18 C 1.40145 * 120.11383 * 180.02562 * 5 3 2 19 19 O 1.35289 * 120.31424 * 359.97438 * 18 5 3 20 20 H 1.09002 * 109.47056 * 299.99969 * 1 2 3 21 21 H 1.09007 * 109.47574 * 59.99493 * 1 2 3 22 22 H 1.08998 * 109.47676 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47570 * 120.00625 * 2 1 3 24 24 H 1.09002 * 109.47056 * 240.00031 * 2 1 3 25 25 H 1.07999 * 119.79112 * 359.97438 * 6 5 3 26 26 H 1.07997 * 119.67601 * 180.30408 * 7 6 5 27 27 H 1.07994 * 119.90262 * 179.69506 * 8 7 6 28 28 H 0.97003 * 120.00472 * 180.02562 * 13 12 10 29 29 H 0.96706 * 113.99783 * 89.99700 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 6 3.4754 1.6890 -0.0006 6 6 4.3883 0.6254 0.0047 7 6 5.7486 0.8706 -0.0023 8 6 6.2298 2.1623 -0.0017 9 6 5.3379 3.2495 -0.0011 10 6 5.8304 4.5722 -0.0011 11 1 5.2289 5.3724 -0.4062 12 6 7.0984 4.8467 0.5240 13 7 7.6897 3.9724 1.2972 14 14 7.9467 6.4614 0.1207 15 1 7.0742 7.2706 -0.7676 16 1 8.2070 7.2108 1.3760 17 1 9.2335 6.1861 -0.5675 18 6 3.9452 3.0093 0.0000 19 8 3.0738 4.0442 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 0.8899 24 1 1.8932 -0.5138 -0.8900 25 1 4.0265 -0.3922 0.0096 26 1 6.4413 0.0421 -0.0031 27 1 7.2950 2.3400 -0.0022 28 1 8.5684 4.1627 1.6614 29 1 2.8205 4.3446 0.8841 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307503692.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:11 Heat of formation + Delta-G solvation = -93.430432 kcal Electronic energy + Delta-G solvation = -14484.619658 eV Core-core repulsion = 11950.526255 eV Total energy + Delta-G solvation = -2534.093402 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.87410 -39.11026 -37.11895 -35.62906 -33.68391 -31.77012 -30.63152 -27.26340 -25.94837 -23.49537 -22.39552 -20.67173 -19.00932 -18.63899 -17.38076 -16.71182 -16.44844 -16.29197 -15.84607 -15.31773 -14.83551 -14.57149 -13.98492 -13.50375 -13.27413 -13.08913 -13.00683 -12.64642 -12.46410 -12.40245 -12.13949 -11.96452 -11.73981 -11.25152 -11.11431 -10.22203 -9.47502 -9.27340 -8.70038 -6.40034 0.11109 0.82890 1.35771 1.41283 1.50661 1.83795 2.18423 2.67661 3.31215 3.45254 3.90010 4.15213 4.33157 4.37735 4.57115 4.74287 4.85304 5.01381 5.03586 5.10824 5.15553 5.26578 5.35452 5.41398 5.68003 5.91795 5.97121 6.20656 6.48033 6.74990 6.81391 6.84326 7.26267 8.25836 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.049747 B = 0.007913 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.717122 B = 3537.734967 C = 4010.158589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.159 4.159 3 C 0.389 3.611 4 O -0.493 6.493 5 C -0.192 4.192 6 C -0.162 4.162 7 C -0.123 4.123 8 C -0.151 4.151 9 C 0.044 3.956 10 C -0.489 4.489 11 H 0.068 0.932 12 C 0.039 3.961 13 N -0.820 5.820 14 Si 0.981 3.019 15 H -0.267 1.267 16 H -0.263 1.263 17 H -0.259 1.259 18 C 0.016 3.984 19 O -0.491 6.491 20 H 0.045 0.955 21 H 0.043 0.957 22 H 0.089 0.911 23 H 0.118 0.882 24 H 0.116 0.884 25 H 0.151 0.849 26 H 0.132 0.868 27 H 0.111 0.889 28 H 0.292 0.708 29 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.297 -7.214 -0.050 7.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.196 4.196 3 C 0.270 3.730 4 O -0.371 6.371 5 C -0.193 4.193 6 C -0.181 4.181 7 C -0.141 4.141 8 C -0.171 4.171 9 C 0.041 3.959 10 C -0.518 4.518 11 H 0.086 0.914 12 C -0.177 4.177 13 N -0.446 5.446 14 Si 0.802 3.198 15 H -0.191 1.191 16 H -0.188 1.188 17 H -0.183 1.183 18 C -0.030 4.030 19 O -0.300 6.300 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.108 0.892 23 H 0.136 0.864 24 H 0.134 0.866 25 H 0.169 0.831 26 H 0.150 0.850 27 H 0.129 0.871 28 H 0.102 0.898 29 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.465 -6.827 -0.513 7.673 hybrid contribution 0.598 1.112 0.497 1.357 sum -2.867 -5.715 -0.016 6.394 Atomic orbital electron populations 1.21583 0.93591 1.02816 1.01629 1.21990 0.98057 0.93257 1.06280 1.23013 0.87421 0.92523 0.70004 1.90448 1.58882 1.49471 1.38333 1.20871 0.95693 0.93588 1.09174 1.21049 0.92000 0.97679 1.07363 1.21070 0.95850 0.96223 1.00940 1.21476 0.99482 0.92086 1.04027 1.18271 0.90689 0.95091 0.91826 1.19617 1.01414 0.94263 1.36518 0.91426 1.26681 0.96850 1.02358 0.91773 1.69816 1.15217 1.37217 1.22392 0.85165 0.78322 0.77049 0.79234 1.19084 1.18758 1.18307 1.19219 0.88519 0.86162 1.09086 1.84564 1.62960 1.50205 1.32261 0.93540 0.93751 0.89192 0.86396 0.86573 0.83121 0.85008 0.87062 0.89763 0.77404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.20 71.98 0.66 -2.61 15 2 C -0.16 -4.06 5.02 29.84 0.15 -3.91 15 3 C 0.39 15.02 7.10 27.92 0.20 15.22 15 4 O -0.49 -22.13 14.78 17.93 0.27 -21.86 15 5 C -0.19 -8.44 5.88 -20.11 -0.12 -8.56 15 6 C -0.16 -6.15 9.47 22.73 0.22 -5.94 15 7 C -0.12 -5.08 9.99 22.17 0.22 -4.86 15 8 C -0.15 -7.57 8.67 22.76 0.20 -7.38 15 9 C 0.04 2.39 5.57 -21.23 -0.12 2.28 15 10 C -0.49 -27.05 8.71 23.40 0.20 -26.84 15 11 H 0.07 3.83 7.66 -2.91 -0.02 3.81 15 12 C 0.04 1.94 5.15 85.26 0.44 2.38 15 13 N -0.82 -41.56 10.96 21.83 0.24 -41.32 15 14 Si 0.98 38.56 29.59 68.60 2.03 40.59 15 15 H -0.27 -10.70 7.11 99.48 0.71 -9.99 15 16 H -0.26 -9.79 7.11 99.48 0.71 -9.09 15 17 H -0.26 -9.57 7.11 99.48 0.71 -8.86 15 18 C 0.02 0.85 6.76 23.49 0.16 1.01 15 19 O -0.49 -25.24 10.86 -64.75 -0.70 -25.94 15 20 H 0.05 1.18 8.10 -2.39 -0.02 1.17 15 21 H 0.04 1.15 8.10 -2.38 -0.02 1.13 15 22 H 0.09 1.49 8.14 -2.39 -0.02 1.48 15 23 H 0.12 2.48 8.07 -2.39 -0.02 2.46 15 24 H 0.12 2.48 8.08 -2.39 -0.02 2.46 15 25 H 0.15 4.21 7.01 -2.91 -0.02 4.19 15 26 H 0.13 4.47 8.06 -2.91 -0.02 4.45 15 27 H 0.11 5.77 6.18 -2.91 -0.02 5.75 15 28 H 0.29 13.19 8.30 -92.71 -0.77 12.42 15 29 H 0.37 16.76 9.06 -74.05 -0.67 16.09 15 Total: -1.00 -64.82 255.79 4.54 -60.28 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.50 Total: 27.48 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 2.21 Total: -39.22 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.24 Total: -41.32 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -0.44 Total: -47.80 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -64.82 4.54 -60.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307503692.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.150 kcal (2) G-P(sol) polarization free energy of solvation -64.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds