Wall clock time and date at job start Mon Mar 30 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38189 * 119.89367 * 2 1 4 4 C 1.38030 * 120.24031 * 180.25932 * 3 2 1 5 5 C 1.39661 * 120.03428 * 359.44023 * 4 3 2 6 6 C 1.47860 * 120.10259 * 180.30161 * 5 4 3 7 7 N 1.34767 * 120.00254 * 359.97438 * 6 5 4 8 8 O 1.21557 * 119.99854 * 180.02562 * 6 5 4 9 9 C 1.39402 * 119.79629 * 0.28231 * 5 4 3 10 10 C 1.38848 * 119.76023 * 0.02562 * 9 5 4 11 11 N 1.39324 * 120.02384 * 180.02562 * 10 9 5 12 12 C 1.36846 * 119.99651 * 359.97438 * 11 10 9 13 13 H 1.07999 * 120.00431 * 359.97438 * 12 11 10 14 14 C 1.38803 * 120.00016 * 180.02562 * 12 11 10 15 15 N 1.31591 * 119.99720 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00025 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47146 * 89.99974 * 16 14 12 18 18 H 1.48494 * 109.47165 * 210.00228 * 16 14 12 19 19 H 1.48502 * 109.46767 * 329.99847 * 16 14 12 20 20 H 1.08997 * 109.47377 * 270.29313 * 1 2 3 21 21 H 1.08994 * 109.47354 * 30.30233 * 1 2 3 22 22 H 1.09009 * 109.46888 * 150.29807 * 1 2 3 23 23 H 1.07996 * 119.88335 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.98690 * 179.72667 * 4 3 2 25 25 H 0.96998 * 119.99830 * 0.02562 * 7 6 5 26 26 H 0.97002 * 120.00370 * 179.97438 * 7 6 5 27 27 H 1.07999 * 120.12019 * 179.97438 * 9 5 4 28 28 H 0.96998 * 120.00904 * 179.97438 * 11 10 9 29 29 H 0.97003 * 119.99638 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1980 0.0000 4 6 3.5760 1.2064 -0.0054 5 6 4.2824 0.0016 0.0009 6 6 5.7609 0.0088 0.0019 7 7 6.4291 1.1792 -0.0039 8 8 6.3738 -1.0409 0.0069 9 6 3.5891 -1.2078 0.0067 10 6 2.2007 -1.2063 0.0056 11 7 1.5022 -2.4119 0.0120 12 6 2.1848 -3.5979 0.0187 13 1 3.2648 -3.5996 0.0187 14 6 1.4891 -4.7990 0.0245 15 7 2.1455 -5.9395 0.0305 16 14 -0.3789 -4.7964 0.0237 17 1 -0.8734 -4.8027 -1.3765 18 1 -0.8759 -6.0046 0.7297 19 1 -0.8724 -3.5797 0.7175 20 1 -0.3634 0.0053 1.0276 21 1 -0.3634 0.8872 -0.5185 22 1 -0.3633 -0.8927 -0.5092 23 1 1.6521 2.1312 -0.0004 24 1 4.1101 2.1451 -0.0098 25 1 5.9401 2.0168 -0.0083 26 1 7.3991 1.1839 -0.0028 27 1 4.1301 -2.1426 0.0112 28 1 0.5323 -2.4106 0.0116 29 1 1.6593 -6.7789 0.0349 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307635393.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:29 Heat of formation + Delta-G solvation = -37.891120 kcal Electronic energy + Delta-G solvation = -14337.294763 eV Core-core repulsion = 11837.902477 eV Total energy + Delta-G solvation = -2499.392286 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.04386 -39.67197 -36.82891 -34.85000 -33.95778 -33.23205 -30.26662 -28.18710 -26.37837 -23.68493 -22.61397 -21.43762 -19.94979 -19.02508 -17.84350 -17.01690 -16.78165 -16.09717 -15.77594 -15.45215 -14.99873 -14.75062 -14.66316 -14.31150 -13.92530 -13.46524 -13.09598 -12.83064 -12.59865 -12.19920 -12.03741 -11.91467 -11.69957 -11.07211 -10.76294 -10.67824 -9.53060 -8.63969 -8.43663 -5.80419 0.09953 0.84032 1.23002 1.31969 1.35357 1.98899 2.17646 2.60649 2.89224 3.15280 3.30046 4.03081 4.11311 4.31195 4.42082 4.66818 4.82524 4.89196 4.96601 5.16759 5.26938 5.46597 5.63647 5.68303 5.74488 5.89640 5.96340 6.25825 6.53646 6.65729 7.32174 7.37861 7.44599 8.73089 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.030565 B = 0.009158 C = 0.007074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.854806 B = 3056.712324 C = 3957.422053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.177 4.177 3 C -0.064 4.064 4 C -0.168 4.168 5 C -0.108 4.108 6 C 0.558 3.442 7 N -0.821 5.821 8 O -0.601 6.601 9 C -0.183 4.183 10 C 0.185 3.815 11 N -0.608 5.608 12 C -0.312 4.312 13 H 0.070 0.930 14 C -0.024 4.024 15 N -0.938 5.938 16 Si 0.956 3.044 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.241 1.241 20 H 0.072 0.928 21 H 0.098 0.902 22 H 0.042 0.958 23 H 0.165 0.835 24 H 0.160 0.840 25 H 0.419 0.581 26 H 0.411 0.589 27 H 0.084 0.916 28 H 0.388 0.612 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 19.046 -0.062 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.184 4.184 3 C -0.083 4.083 4 C -0.190 4.190 5 C -0.112 4.112 6 C 0.345 3.655 7 N -0.386 5.386 8 O -0.483 6.483 9 C -0.209 4.209 10 C 0.072 3.928 11 N -0.222 5.222 12 C -0.442 4.442 13 H 0.088 0.912 14 C -0.222 4.222 15 N -0.578 5.578 16 Si 0.777 3.223 17 H -0.184 1.184 18 H -0.199 1.199 19 H -0.165 1.165 20 H 0.090 0.910 21 H 0.117 0.883 22 H 0.061 0.939 23 H 0.182 0.818 24 H 0.177 0.823 25 H 0.253 0.747 26 H 0.243 0.757 27 H 0.102 0.898 28 H 0.225 0.775 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.020 17.823 -0.056 18.078 hybrid contribution -0.255 -0.910 0.006 0.945 sum -3.275 16.914 -0.050 17.228 Atomic orbital electron populations 1.20657 0.89988 1.02887 1.02503 1.19775 0.96928 0.91197 1.10483 1.20970 0.93644 0.96976 0.96694 1.21088 0.94616 0.95763 1.07499 1.19588 0.91693 0.94543 1.05369 1.18667 0.88318 0.83945 0.74540 1.43409 1.11309 1.07615 1.76278 1.90783 1.70916 1.34177 1.52445 1.20575 0.93073 0.97385 1.09839 1.17876 0.91063 0.86621 0.97227 1.40931 1.06624 1.02364 1.72283 1.19217 0.93135 0.83646 1.48183 0.91232 1.25910 1.04765 0.93972 0.97516 1.69869 1.38337 0.98205 1.51428 0.85465 0.77667 0.79472 0.79693 1.18439 1.19864 1.16508 0.90961 0.88346 0.93910 0.81789 0.82257 0.74725 0.75658 0.89799 0.77517 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.71 9.56 71.24 0.68 -2.03 15 2 C -0.18 -5.90 5.91 -19.65 -0.12 -6.02 15 3 C -0.06 -1.66 9.67 22.21 0.21 -1.45 15 4 C -0.17 -4.45 9.54 22.56 0.22 -4.23 15 5 C -0.11 -4.05 5.87 -20.11 -0.12 -4.16 15 6 C 0.56 20.26 8.05 86.79 0.70 20.95 15 7 N -0.82 -17.65 8.82 -175.60 -1.55 -19.20 15 8 O -0.60 -28.75 17.18 -3.89 -0.07 -28.81 15 9 C -0.18 -8.76 8.85 22.70 0.20 -8.56 15 10 C 0.19 8.24 6.59 38.32 0.25 8.50 15 11 N -0.61 -29.74 5.14 -184.38 -0.95 -30.68 15 12 C -0.31 -18.32 10.04 84.05 0.84 -17.47 15 13 H 0.07 4.65 5.91 -2.91 -0.02 4.64 15 14 C -0.02 -1.37 5.50 84.86 0.47 -0.90 15 15 N -0.94 -58.04 13.97 21.65 0.30 -57.74 15 16 Si 0.96 41.40 27.73 68.60 1.90 43.30 15 17 H -0.26 -10.75 7.11 99.48 0.71 -10.04 15 18 H -0.27 -11.67 7.11 99.48 0.71 -10.97 15 19 H -0.24 -9.21 6.52 99.48 0.65 -8.57 15 20 H 0.07 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.10 1.85 8.08 -2.39 -0.02 1.83 15 22 H 0.04 1.22 6.53 -2.38 -0.02 1.20 15 23 H 0.16 2.66 8.06 -2.91 -0.02 2.64 15 24 H 0.16 2.52 6.40 -2.91 -0.02 2.50 15 25 H 0.42 5.56 6.86 -92.71 -0.64 4.93 15 26 H 0.41 7.35 8.93 -92.71 -0.83 6.52 15 27 H 0.08 4.84 5.54 -2.91 -0.02 4.82 15 28 H 0.39 16.87 3.72 -92.71 -0.35 16.53 15 29 H 0.28 15.78 8.31 -92.71 -0.77 15.01 15 Total: -1.00 -78.07 249.64 2.33 -75.74 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: -0.65 Total: 32.76 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 3.34 Total: -15.37 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -2.19 Total: -107.63 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.07 Total: -28.81 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.90 Total: 43.30 kcal Total: -78.07 2.33 -75.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307635393.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.849 kcal (2) G-P(sol) polarization free energy of solvation -78.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds