Wall clock time and date at job start Mon Mar 30 2020 02:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99761 * 2 1 4 4 H 1.48500 * 109.47025 * 239.99121 * 3 2 1 5 5 H 1.48495 * 109.47662 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47409 * 119.99693 * 3 2 1 7 7 C 1.38815 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99799 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00147 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47170 * 179.97438 * 10 9 7 12 12 C 1.38364 * 119.85421 * 89.99592 * 11 10 9 13 13 C 1.37967 * 120.14264 * 179.97438 * 12 11 10 14 14 C 1.39570 * 119.85310 * 0.02562 * 13 12 11 15 15 C 1.47842 * 120.14248 * 179.97438 * 14 13 12 16 16 N 1.34784 * 120.00082 * 180.02562 * 15 14 13 17 17 O 1.21552 * 120.00146 * 359.97438 * 15 14 13 18 18 C 1.39581 * 119.71335 * 0.25292 * 14 13 12 19 19 C 1.37955 * 119.84955 * 359.46623 * 18 14 13 20 20 H 0.96998 * 120.00091 * 0.02562 * 1 2 3 21 21 H 0.97001 * 120.00114 * 359.97438 * 9 7 2 22 22 H 1.08997 * 109.46842 * 59.99451 * 10 9 7 23 23 H 1.09007 * 109.46581 * 299.99555 * 10 9 7 24 24 H 1.07998 * 119.92639 * 0.02562 * 12 11 10 25 25 H 1.07996 * 120.07026 * 180.02562 * 13 12 11 26 26 H 0.97000 * 119.99339 * 359.97438 * 16 15 14 27 27 H 0.96995 * 120.00015 * 179.72522 * 16 15 14 28 28 H 1.07995 * 120.07371 * 179.72649 * 18 14 13 29 29 H 1.08002 * 119.92829 * 180.27238 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0789 -4.8022 0.0012 12 6 0.6308 -5.3259 -1.1986 13 6 -0.2653 -6.3749 -1.2049 14 6 -0.7202 -6.9074 0.0024 15 6 -1.6809 -8.0311 0.0030 16 7 -2.1187 -8.5428 1.1706 17 8 -2.0767 -8.4930 -1.0494 18 6 -0.2686 -6.3706 1.2091 19 6 0.6319 -5.3255 1.2014 20 1 -0.4850 0.8400 -0.0004 21 1 0.3557 -2.3880 0.0005 22 1 2.6849 -3.7144 0.8905 23 1 2.6848 -3.7145 -0.8896 24 1 0.9840 -4.9132 -2.1320 25 1 -0.6140 -6.7831 -2.1420 26 1 -1.8031 -8.1739 2.0103 27 1 -2.7521 -9.2774 1.1710 28 1 -0.6202 -6.7752 2.1466 29 1 0.9855 -4.9121 2.1344 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379630222.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:34 Heat of formation + Delta-G solvation = -7.017429 kcal Electronic energy + Delta-G solvation = -13826.595960 eV Core-core repulsion = 11328.542458 eV Total energy + Delta-G solvation = -2498.053502 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.00818 -38.25805 -34.76445 -33.86247 -31.98960 -30.72673 -29.84589 -26.02382 -23.38274 -22.44919 -21.81484 -20.18017 -18.19212 -17.27784 -16.85118 -15.23494 -15.00028 -14.75617 -14.65683 -14.52455 -13.54686 -13.39485 -13.26122 -12.68545 -12.23920 -12.18012 -11.19157 -10.91036 -10.81064 -10.76820 -10.17543 -10.03357 -9.83234 -9.80554 -8.93586 -8.80069 -8.58327 -6.98927 -5.79713 -3.10228 0.97881 1.57514 2.92972 3.42285 3.44752 3.46644 3.47877 4.01880 4.58600 4.80515 4.90135 5.11272 5.30499 5.49924 5.59498 5.64938 5.97223 6.10778 6.12910 6.38132 6.40892 6.52163 6.53007 6.66473 7.00271 7.08727 7.23396 7.65293 8.17637 8.37640 9.49274 10.04117 10.39859 11.42570 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.060304 B = 0.005222 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.200434 B = 5360.563661 C = 5379.519162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.726 5.726 10 C 0.181 3.819 11 C -0.045 4.045 12 C -0.113 4.113 13 C -0.061 4.061 14 C -0.155 4.155 15 C 0.567 3.433 16 N -0.854 5.854 17 O -0.547 6.547 18 C -0.089 4.089 19 C -0.114 4.114 20 H 0.257 0.743 21 H 0.386 0.614 22 H 0.031 0.969 23 H 0.032 0.968 24 H 0.131 0.869 25 H 0.132 0.868 26 H 0.401 0.599 27 H 0.402 0.598 28 H 0.121 0.879 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.809 -14.674 3.867 15.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.371 5.371 10 C 0.055 3.945 11 C -0.045 4.045 12 C -0.132 4.132 13 C -0.079 4.079 14 C -0.159 4.159 15 C 0.355 3.645 16 N -0.418 5.418 17 O -0.425 6.425 18 C -0.108 4.108 19 C -0.132 4.132 20 H 0.066 0.934 21 H 0.220 0.780 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.149 0.851 25 H 0.150 0.850 26 H 0.231 0.769 27 H 0.232 0.768 28 H 0.139 0.861 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.822 -14.705 3.106 15.052 hybrid contribution -0.033 0.870 0.526 1.017 sum -0.855 -13.836 3.631 14.330 Atomic orbital electron populations 1.69662 1.05148 1.25910 1.57192 1.24771 0.95545 0.97752 1.02713 0.86232 0.78496 0.83332 0.77886 1.21183 1.21651 1.21198 1.19190 0.91058 0.83888 1.43446 0.91043 1.42314 1.05947 0.99208 1.89633 1.19767 0.91848 0.83855 0.99080 1.20590 0.95922 0.95280 0.92753 1.21156 0.97520 0.95977 0.98533 1.21221 0.94737 0.94618 0.97374 1.19743 1.01933 0.99352 0.94843 1.18383 0.80332 0.82274 0.83539 1.43760 1.49743 1.39614 1.08668 1.90789 1.58635 1.61726 1.31359 1.21179 0.96834 0.96379 0.96366 1.21068 0.97590 0.96105 0.98467 0.93352 0.78012 0.95116 0.95076 0.85122 0.85000 0.76935 0.76755 0.86073 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.12 13.06 55.49 0.72 -27.40 15 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 15 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 15 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 7 C -0.25 -6.79 9.99 -15.06 -0.15 -6.94 15 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 15 9 N -0.73 -18.30 5.59 -61.08 -0.34 -18.64 15 10 C 0.18 3.59 6.38 -5.19 -0.03 3.56 15 11 C -0.04 -0.76 5.25 -104.53 -0.55 -1.31 15 12 C -0.11 -1.81 9.68 -39.63 -0.38 -2.19 15 13 C -0.06 -0.92 9.60 -39.18 -0.38 -1.29 15 14 C -0.16 -2.18 5.87 -104.97 -0.62 -2.80 15 15 C 0.57 7.70 8.05 -12.33 -0.10 7.60 15 16 N -0.85 -7.48 8.83 30.53 0.27 -7.21 15 17 O -0.55 -9.39 17.18 5.32 0.09 -9.30 15 18 C -0.09 -1.12 9.54 -39.18 -0.37 -1.49 15 19 C -0.11 -1.68 9.68 -39.64 -0.38 -2.06 15 20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 21 H 0.39 10.39 7.66 -40.82 -0.31 10.08 15 22 H 0.03 0.60 8.08 -51.93 -0.42 0.18 15 23 H 0.03 0.61 8.08 -51.92 -0.42 0.19 15 24 H 0.13 1.99 8.06 -52.49 -0.42 1.56 15 25 H 0.13 1.91 7.65 -52.49 -0.40 1.51 15 26 H 0.40 2.46 6.86 -40.82 -0.28 2.18 15 27 H 0.40 2.84 8.93 -40.82 -0.36 2.48 15 28 H 0.12 1.05 6.41 -52.49 -0.34 0.72 15 29 H 0.13 1.78 8.06 -52.49 -0.42 1.36 15 LS Contribution 261.00 15.07 3.93 3.93 Total: -1.00 -33.14 261.00 -6.33 -39.48 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -2.93 Total: 9.29 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -3.06 Total: -7.34 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.65 Total: -53.25 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.14 -6.33 -39.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379630222.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.461 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds