Wall clock time and date at job start Mon Mar 30 2020 02:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99761 * 2 1 4 4 H 1.48500 * 109.47025 * 239.99121 * 3 2 1 5 5 H 1.48495 * 109.47662 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47409 * 119.99693 * 3 2 1 7 7 C 1.38815 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99799 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00147 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47170 * 179.97438 * 10 9 7 12 12 C 1.38364 * 119.85421 * 89.99592 * 11 10 9 13 13 C 1.37967 * 120.14264 * 179.97438 * 12 11 10 14 14 C 1.39570 * 119.85310 * 0.02562 * 13 12 11 15 15 C 1.47842 * 120.14248 * 179.97438 * 14 13 12 16 16 N 1.34784 * 120.00082 * 180.02562 * 15 14 13 17 17 O 1.21552 * 120.00146 * 359.97438 * 15 14 13 18 18 C 1.39581 * 119.71335 * 0.25292 * 14 13 12 19 19 C 1.37955 * 119.84955 * 359.46623 * 18 14 13 20 20 H 0.96998 * 120.00091 * 0.02562 * 1 2 3 21 21 H 0.97001 * 120.00114 * 359.97438 * 9 7 2 22 22 H 1.08997 * 109.46842 * 59.99451 * 10 9 7 23 23 H 1.09007 * 109.46581 * 299.99555 * 10 9 7 24 24 H 1.07998 * 119.92639 * 0.02562 * 12 11 10 25 25 H 1.07996 * 120.07026 * 180.02562 * 13 12 11 26 26 H 0.97000 * 119.99339 * 359.97438 * 16 15 14 27 27 H 0.96995 * 120.00015 * 179.72522 * 16 15 14 28 28 H 1.07995 * 120.07371 * 179.72649 * 18 14 13 29 29 H 1.08002 * 119.92829 * 180.27238 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0789 -4.8022 0.0012 12 6 0.6308 -5.3259 -1.1986 13 6 -0.2653 -6.3749 -1.2049 14 6 -0.7202 -6.9074 0.0024 15 6 -1.6809 -8.0311 0.0030 16 7 -2.1187 -8.5428 1.1706 17 8 -2.0767 -8.4930 -1.0494 18 6 -0.2686 -6.3706 1.2091 19 6 0.6319 -5.3255 1.2014 20 1 -0.4850 0.8400 -0.0004 21 1 0.3557 -2.3880 0.0005 22 1 2.6849 -3.7144 0.8905 23 1 2.6848 -3.7145 -0.8896 24 1 0.9840 -4.9132 -2.1320 25 1 -0.6140 -6.7831 -2.1420 26 1 -1.8031 -8.1739 2.0103 27 1 -2.7521 -9.2774 1.1710 28 1 -0.6202 -6.7752 2.1466 29 1 0.9855 -4.9121 2.1344 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379630222.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:34 Heat of formation + Delta-G solvation = -31.873538 kcal Electronic energy + Delta-G solvation = -13827.673802 eV Core-core repulsion = 11328.542458 eV Total energy + Delta-G solvation = -2499.131344 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11650 -39.44116 -36.53233 -34.90224 -33.70443 -31.87120 -31.48110 -27.64628 -25.12337 -23.59302 -23.24939 -21.33045 -19.37219 -19.09199 -17.84560 -16.83112 -16.30316 -16.11516 -15.84104 -15.82462 -15.23349 -15.01301 -14.46315 -14.12211 -13.79350 -13.51428 -12.99550 -12.72841 -12.40155 -12.07458 -12.00845 -11.84909 -11.19406 -10.96766 -10.73769 -9.94139 -9.81458 -9.03362 -7.95120 -5.25640 -0.18844 0.42956 1.48735 1.51889 1.57997 1.81483 2.53488 2.56655 2.87746 3.38153 3.78229 3.85604 3.98683 4.07759 4.23490 4.40952 4.47071 4.79273 4.84311 4.96161 5.10325 5.26034 5.36352 5.48697 5.70968 5.85484 5.92888 6.25262 6.40422 7.27929 7.32268 8.04450 8.29370 9.27905 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.060304 B = 0.005222 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.200434 B = 5360.563661 C = 5379.519162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.977 3.023 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.249 4.249 8 H 0.080 0.920 9 N -0.739 5.739 10 C 0.183 3.817 11 C -0.065 4.065 12 C -0.122 4.122 13 C -0.071 4.071 14 C -0.157 4.157 15 C 0.566 3.434 16 N -0.826 5.826 17 O -0.589 6.589 18 C -0.072 4.072 19 C -0.118 4.118 20 H 0.252 0.748 21 H 0.374 0.626 22 H 0.040 0.960 23 H 0.032 0.968 24 H 0.128 0.872 25 H 0.131 0.869 26 H 0.417 0.583 27 H 0.414 0.586 28 H 0.168 0.832 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.524 -15.579 5.335 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.805 3.195 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.381 4.381 8 H 0.098 0.902 9 N -0.382 5.382 10 C 0.057 3.943 11 C -0.066 4.066 12 C -0.140 4.140 13 C -0.090 4.090 14 C -0.161 4.161 15 C 0.353 3.647 16 N -0.391 5.391 17 O -0.471 6.471 18 C -0.090 4.090 19 C -0.136 4.136 20 H 0.060 0.940 21 H 0.206 0.794 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.146 0.854 25 H 0.149 0.851 26 H 0.250 0.750 27 H 0.247 0.753 28 H 0.185 0.815 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.501 -15.655 4.625 16.331 hybrid contribution -0.122 1.017 0.109 1.031 sum -0.623 -14.637 4.734 15.397 Atomic orbital electron populations 1.69826 1.06716 1.26250 1.59167 1.25611 0.96395 1.01217 1.03437 0.85170 0.77151 0.78874 0.78295 1.20397 1.22270 1.20083 1.19636 0.91667 0.85036 1.41724 0.90222 1.42511 1.05573 1.00548 1.89575 1.19833 0.92360 0.82904 0.99203 1.20409 0.96774 0.95292 0.94112 1.21142 0.98061 0.96501 0.98317 1.21290 0.94850 0.94628 0.98260 1.19960 1.01704 0.99391 0.95006 1.18337 0.80182 0.82082 0.84115 1.43529 1.48656 1.38999 1.07921 1.90778 1.60187 1.63008 1.33137 1.21545 0.95015 0.94824 0.97620 1.21258 0.97828 0.96570 0.97980 0.93951 0.79446 0.94196 0.95008 0.85446 0.85062 0.75008 0.75336 0.81491 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.36 13.06 21.65 0.28 -59.08 15 2 C -0.07 -4.24 5.50 84.86 0.47 -3.78 15 3 Si 0.98 45.67 29.55 68.60 2.03 47.70 15 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 15 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 7 C -0.25 -13.79 9.99 84.04 0.84 -12.95 15 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 15 9 N -0.74 -37.46 5.59 -347.17 -1.94 -39.40 15 10 C 0.18 7.20 6.38 85.63 0.55 7.74 15 11 C -0.07 -2.17 5.25 -19.81 -0.10 -2.27 15 12 C -0.12 -3.89 9.68 22.24 0.22 -3.68 15 13 C -0.07 -2.13 9.60 22.53 0.22 -1.91 15 14 C -0.16 -4.12 5.87 -20.09 -0.12 -4.23 15 15 C 0.57 14.15 8.05 86.78 0.70 14.85 15 16 N -0.83 -11.61 8.83 -175.60 -1.55 -13.16 15 17 O -0.59 -19.69 17.18 -3.88 -0.07 -19.76 15 18 C -0.07 -1.57 9.54 22.53 0.21 -1.36 15 19 C -0.12 -3.24 9.68 22.23 0.22 -3.03 15 20 H 0.25 14.96 8.31 -92.71 -0.77 14.19 15 21 H 0.37 20.46 7.66 -92.71 -0.71 19.75 15 22 H 0.04 1.50 8.08 -2.39 -0.02 1.49 15 23 H 0.03 1.25 8.08 -2.38 -0.02 1.23 15 24 H 0.13 4.01 8.06 -2.91 -0.02 3.99 15 25 H 0.13 3.87 7.65 -2.91 -0.02 3.84 15 26 H 0.42 3.21 6.86 -92.71 -0.64 2.58 15 27 H 0.41 4.48 8.93 -92.71 -0.83 3.65 15 28 H 0.17 2.03 6.41 -2.91 -0.02 2.01 15 29 H 0.14 3.52 8.06 -2.91 -0.02 3.50 15 Total: -1.00 -71.60 261.00 0.97 -70.63 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -0.97 Total: 23.69 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 3.19 Total: -10.62 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -3.21 Total: -111.64 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.07 Total: -19.76 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.60 0.97 -70.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379630222.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.754 kcal (2) G-P(sol) polarization free energy of solvation -71.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds