Wall clock time and date at job start Mon Mar 30 2020 02:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.37866 * 126.22422 * 313.01984 * 3 2 1 5 5 C 1.39956 * 107.09941 * 180.14491 * 4 3 2 6 6 C 1.35365 * 107.85805 * 359.61126 * 5 4 3 7 7 N 1.35768 * 108.84822 * 0.24089 * 6 5 4 8 8 C 1.46493 * 125.67772 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47581 * 264.97767 * 8 7 6 10 10 O 1.42903 * 109.47349 * 180.02562 * 9 8 7 11 11 C 1.42898 * 113.99621 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47026 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99408 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00418 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99829 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00202 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47167 * 59.99871 * 16 14 12 18 18 H 1.48504 * 109.46957 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46823 * 299.99426 * 16 14 12 20 20 H 1.07996 * 126.44925 * 0.02562 * 4 3 2 21 21 H 1.08002 * 126.07445 * 179.88047 * 5 4 3 22 22 H 1.07994 * 125.58024 * 180.21979 * 6 5 4 23 23 H 1.09005 * 109.47542 * 24.97928 * 8 7 6 24 24 H 1.09001 * 109.46938 * 144.97758 * 8 7 6 25 25 H 1.08996 * 109.47057 * 300.00551 * 9 8 7 26 26 H 1.09001 * 109.46991 * 60.00024 * 9 8 7 27 27 H 1.09002 * 109.47051 * 299.99319 * 11 10 9 28 28 H 1.08999 * 109.47477 * 60.00182 * 11 10 9 29 29 H 0.96998 * 120.00242 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3831 -0.7578 0.8131 5 6 4.7052 -0.4419 0.4802 6 6 4.6749 0.4764 -0.5138 7 7 3.3805 0.7541 -0.8151 8 6 2.9251 1.6984 -1.8383 9 6 2.6461 3.0564 -1.1912 10 8 2.2013 3.9774 -2.1892 11 6 1.9122 5.2836 -1.6871 12 6 1.4538 6.1667 -2.8190 13 1 1.3901 5.7701 -3.8215 14 6 1.1158 7.4809 -2.5747 15 7 1.1928 7.9636 -1.3538 16 14 0.5483 8.5757 -3.9778 17 1 -0.6744 7.9990 -4.5922 18 1 0.2477 9.9332 -3.4560 19 1 1.6212 8.6655 -5.0006 20 1 3.0617 -1.4616 1.5666 21 1 5.5923 -0.8600 0.9327 22 1 5.5389 0.9166 -0.9893 23 1 3.6976 1.8104 -2.5992 24 1 2.0124 1.3216 -2.3000 25 1 1.8737 2.9445 -0.4304 26 1 3.5588 3.4332 -0.7295 27 1 1.1248 5.2182 -0.9362 28 1 2.8100 5.7066 -1.2365 29 1 0.9547 8.8880 -1.1818 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385257717.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:43 Heat of formation + Delta-G solvation = 27.912351 kcal Electronic energy + Delta-G solvation = -13716.135801 eV Core-core repulsion = 11219.596968 eV Total energy + Delta-G solvation = -2496.538833 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.38789 -37.06369 -36.40464 -33.63678 -32.64175 -29.58976 -28.79917 -26.82712 -23.16779 -22.40632 -22.15495 -20.76334 -18.26314 -16.58154 -16.02242 -15.57013 -15.23728 -15.10705 -14.34091 -14.03437 -13.57747 -13.39599 -12.99397 -12.84253 -12.81600 -12.37822 -12.11518 -12.01487 -11.23703 -10.97390 -10.92162 -10.81392 -10.19274 -9.26708 -9.01678 -8.90368 -8.35183 -8.31501 -6.19576 -4.22827 1.35483 2.19472 2.64830 3.00956 3.27126 3.30163 3.33716 3.47076 3.84560 4.28022 4.65167 4.70288 4.97111 5.16886 5.26930 5.27725 5.35799 5.50564 5.80112 5.92621 5.96737 6.02292 6.63593 6.85830 6.92865 7.02516 7.27569 7.47424 7.67391 8.00771 8.35794 8.87854 9.42242 10.91786 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.046763 B = 0.005131 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.624339 B = 5456.134219 C = 5724.273112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.278 3.722 3 C 0.049 3.951 4 C -0.118 4.118 5 C -0.207 4.207 6 C 0.033 3.967 7 N -0.414 5.414 8 C 0.099 3.901 9 C 0.051 3.949 10 O -0.393 6.393 11 C 0.198 3.802 12 C -0.521 4.521 13 H 0.067 0.933 14 C 0.058 3.942 15 N -0.897 5.897 16 Si 0.911 3.089 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 H 0.147 0.853 21 H 0.147 0.853 22 H 0.174 0.826 23 H 0.109 0.891 24 H 0.096 0.904 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.007 0.993 28 H 0.009 0.991 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.409 -14.777 2.672 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.037 4.037 3 C -0.064 4.064 4 C -0.147 4.147 5 C -0.231 4.231 6 C -0.102 4.102 7 N -0.089 5.089 8 C -0.022 4.022 9 C -0.028 4.028 10 O -0.312 6.312 11 C 0.124 3.876 12 C -0.559 4.559 13 H 0.085 0.915 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.738 3.262 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 H 0.165 0.835 21 H 0.165 0.835 22 H 0.191 0.809 23 H 0.127 0.873 24 H 0.114 0.886 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.025 0.975 28 H 0.027 0.973 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.447 -14.367 2.290 15.913 hybrid contribution 0.168 0.860 -0.297 0.925 sum 6.615 -13.507 1.993 15.172 Atomic orbital electron populations 1.81302 1.11330 1.08162 1.07670 1.24397 0.91027 0.94040 0.94259 1.15732 0.83275 1.04838 1.02560 1.21238 0.92158 1.00986 1.00270 1.20818 0.97158 1.03330 1.01782 1.22131 0.85687 1.01538 1.00887 1.44126 1.05775 1.30959 1.28013 1.21901 1.02967 0.88394 0.88962 1.22439 0.98983 0.89169 0.92179 1.87803 1.86723 1.23544 1.33165 1.20274 0.94896 0.76653 0.95782 1.20980 1.45205 0.94816 0.94889 0.91456 1.24958 0.95397 0.97696 0.96346 1.69948 1.48127 1.15801 1.19665 0.86348 0.79322 0.79011 0.81539 1.19934 1.21043 1.19909 0.83478 0.83539 0.80869 0.87324 0.88588 0.93988 0.93296 0.97487 0.97344 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.85 18.54 41.84 0.78 -6.07 15 2 C 0.28 4.08 15.30 -22.47 -0.34 3.74 15 3 C 0.05 0.61 6.75 -83.50 -0.56 0.05 15 4 C -0.12 -1.19 10.85 -39.07 -0.42 -1.62 15 5 C -0.21 -1.84 10.81 -39.96 -0.43 -2.27 15 6 C 0.03 0.32 11.38 -16.83 -0.19 0.12 15 7 N -0.41 -4.98 2.76 -114.03 -0.32 -5.29 15 8 C 0.10 1.33 6.21 -4.05 -0.03 1.30 15 9 C 0.05 0.90 6.26 37.16 0.23 1.14 15 10 O -0.39 -9.14 10.33 -35.23 -0.36 -9.51 15 11 C 0.20 5.37 5.69 36.01 0.20 5.58 15 12 C -0.52 -15.19 9.43 -34.44 -0.32 -15.51 15 13 H 0.07 1.93 7.81 -52.48 -0.41 1.52 15 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 15 N -0.90 -26.69 13.29 55.43 0.74 -25.95 15 16 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 15 17 H -0.27 -6.42 7.11 56.52 0.40 -6.01 15 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 20 H 0.15 1.17 8.06 -52.49 -0.42 0.75 15 21 H 0.15 0.93 8.06 -52.49 -0.42 0.51 15 22 H 0.17 1.16 8.06 -52.49 -0.42 0.74 15 23 H 0.11 1.24 8.12 -51.93 -0.42 0.82 15 24 H 0.10 1.33 7.93 -51.93 -0.41 0.92 15 25 H 0.04 0.79 8.14 -51.93 -0.42 0.36 15 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 15 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 LS Contribution 272.84 15.07 4.11 4.11 Total: -1.00 -32.10 272.84 -5.38 -37.48 By element: Atomic # 1 Polarization: -2.13 SS G_CDS: -3.34 Total: -5.47 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.97 Total: -5.92 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 1.20 Total: -37.32 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.36 Total: -9.51 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.10 -5.38 -37.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385257717.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.389 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds