Wall clock time and date at job start Mon Mar 30 2020 02:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.37866 * 126.22422 * 313.01984 * 3 2 1 5 5 C 1.39956 * 107.09941 * 180.14491 * 4 3 2 6 6 C 1.35365 * 107.85805 * 359.61126 * 5 4 3 7 7 N 1.35768 * 108.84822 * 0.24089 * 6 5 4 8 8 C 1.46493 * 125.67772 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47581 * 264.97767 * 8 7 6 10 10 O 1.42903 * 109.47349 * 180.02562 * 9 8 7 11 11 C 1.42898 * 113.99621 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47026 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99408 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00418 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99829 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00202 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47167 * 59.99871 * 16 14 12 18 18 H 1.48504 * 109.46957 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46823 * 299.99426 * 16 14 12 20 20 H 1.07996 * 126.44925 * 0.02562 * 4 3 2 21 21 H 1.08002 * 126.07445 * 179.88047 * 5 4 3 22 22 H 1.07994 * 125.58024 * 180.21979 * 6 5 4 23 23 H 1.09005 * 109.47542 * 24.97928 * 8 7 6 24 24 H 1.09001 * 109.46938 * 144.97758 * 8 7 6 25 25 H 1.08996 * 109.47057 * 300.00551 * 9 8 7 26 26 H 1.09001 * 109.46991 * 60.00024 * 9 8 7 27 27 H 1.09002 * 109.47051 * 299.99319 * 11 10 9 28 28 H 1.08999 * 109.47477 * 60.00182 * 11 10 9 29 29 H 0.96998 * 120.00242 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3831 -0.7578 0.8131 5 6 4.7052 -0.4419 0.4802 6 6 4.6749 0.4764 -0.5138 7 7 3.3805 0.7541 -0.8151 8 6 2.9251 1.6984 -1.8383 9 6 2.6461 3.0564 -1.1912 10 8 2.2013 3.9774 -2.1892 11 6 1.9122 5.2836 -1.6871 12 6 1.4538 6.1667 -2.8190 13 1 1.3901 5.7701 -3.8215 14 6 1.1158 7.4809 -2.5747 15 7 1.1928 7.9636 -1.3538 16 14 0.5483 8.5757 -3.9778 17 1 -0.6744 7.9990 -4.5922 18 1 0.2477 9.9332 -3.4560 19 1 1.6212 8.6655 -5.0006 20 1 3.0617 -1.4616 1.5666 21 1 5.5923 -0.8600 0.9327 22 1 5.5389 0.9166 -0.9893 23 1 3.6976 1.8104 -2.5992 24 1 2.0124 1.3216 -2.3000 25 1 1.8737 2.9445 -0.4304 26 1 3.5588 3.4332 -0.7295 27 1 1.1248 5.2182 -0.9362 28 1 2.8100 5.7066 -1.2365 29 1 0.9547 8.8880 -1.1818 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385257717.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:43 Heat of formation + Delta-G solvation = 7.831961 kcal Electronic energy + Delta-G solvation = -13717.006552 eV Core-core repulsion = 11219.596968 eV Total energy + Delta-G solvation = -2497.409584 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.24814 -38.83631 -37.58210 -35.22256 -34.33289 -30.45587 -30.31958 -28.61306 -24.72534 -24.20377 -23.15603 -21.55310 -19.30259 -18.69988 -17.46109 -17.04692 -16.68881 -16.47239 -15.95722 -15.18197 -15.07398 -14.54581 -14.31226 -14.15053 -13.98096 -13.64364 -13.30392 -13.03791 -12.98594 -12.86004 -12.56303 -12.45327 -12.09434 -11.41706 -10.98196 -10.42171 -9.76998 -9.17011 -8.38254 -6.52184 0.40760 1.16144 1.37945 1.42627 1.51158 1.85507 1.96811 2.31556 2.43396 2.78854 2.95955 3.22667 3.60214 3.94402 4.16542 4.27718 4.30605 4.53449 4.56467 4.65141 4.75680 5.04499 5.22066 5.30089 5.46957 5.84590 5.85484 5.97451 6.22684 6.35719 6.40172 6.67882 7.19666 8.73888 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.046763 B = 0.005131 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.624339 B = 5456.134219 C = 5724.273112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.295 3.705 3 C 0.005 3.995 4 C -0.099 4.099 5 C -0.204 4.204 6 C 0.043 3.957 7 N -0.424 5.424 8 C 0.114 3.886 9 C 0.047 3.953 10 O -0.403 6.403 11 C 0.211 3.789 12 C -0.554 4.554 13 H 0.066 0.934 14 C 0.007 3.993 15 N -0.930 5.930 16 Si 0.986 3.014 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.260 1.260 20 H 0.168 0.832 21 H 0.179 0.821 22 H 0.206 0.794 23 H 0.136 0.864 24 H 0.086 0.914 25 H 0.024 0.976 26 H 0.060 0.940 27 H -0.020 1.020 28 H -0.005 1.005 29 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.279 -15.224 1.986 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.018 4.018 3 C -0.106 4.106 4 C -0.128 4.128 5 C -0.227 4.227 6 C -0.092 4.092 7 N -0.101 5.101 8 C -0.008 4.008 9 C -0.031 4.031 10 O -0.322 6.322 11 C 0.136 3.864 12 C -0.592 4.592 13 H 0.085 0.915 14 C -0.192 4.192 15 N -0.569 5.569 16 Si 0.808 3.192 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.185 1.185 20 H 0.185 0.815 21 H 0.196 0.804 22 H 0.222 0.778 23 H 0.154 0.846 24 H 0.104 0.896 25 H 0.042 0.958 26 H 0.079 0.921 27 H -0.002 1.002 28 H 0.013 0.987 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.325 -14.854 1.623 17.105 hybrid contribution -0.271 0.898 0.029 0.939 sum 8.055 -13.956 1.651 16.198 Atomic orbital electron populations 1.81293 1.12861 1.10271 1.09718 1.24831 0.91604 0.92584 0.92811 1.15940 0.82373 1.07376 1.04908 1.21671 0.92470 0.99633 0.99047 1.21247 0.97501 1.02743 1.01244 1.22851 0.85299 1.00710 1.00326 1.44097 1.06644 1.31075 1.28234 1.21651 1.03737 0.85990 0.89396 1.22692 0.98579 0.90432 0.91416 1.87739 1.86986 1.22664 1.34824 1.19880 0.93275 0.78489 0.94718 1.21360 1.46493 0.96017 0.95314 0.91529 1.26005 0.94807 0.99058 0.99349 1.70061 1.48403 1.16518 1.21907 0.85193 0.79166 0.76852 0.77984 1.19209 1.19985 1.18486 0.81466 0.80357 0.77751 0.84604 0.89578 0.95796 0.92135 1.00210 0.98685 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.33 18.54 19.00 0.35 -15.98 15 2 C 0.30 8.90 15.30 88.33 1.35 10.25 15 3 C 0.01 0.12 6.75 39.40 0.27 0.39 15 4 C -0.10 -1.75 10.85 22.60 0.25 -1.50 15 5 C -0.20 -2.81 10.81 22.02 0.24 -2.57 15 6 C 0.04 0.66 11.38 83.42 0.95 1.61 15 7 N -0.42 -9.44 2.76 -514.67 -1.42 -10.86 15 8 C 0.11 2.96 6.21 86.38 0.54 3.49 15 9 C 0.05 1.68 6.26 71.98 0.45 2.13 15 10 O -0.40 -19.12 10.33 -148.98 -1.54 -20.66 15 11 C 0.21 11.85 5.69 71.24 0.41 12.26 15 12 C -0.55 -32.84 9.43 25.60 0.24 -32.60 15 13 H 0.07 3.85 7.81 -2.91 -0.02 3.83 15 14 C 0.01 0.39 5.46 84.65 0.46 0.85 15 15 N -0.93 -55.93 13.29 21.45 0.28 -55.64 15 16 Si 0.99 43.99 29.54 68.60 2.03 46.02 15 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 18 H -0.28 -11.74 7.11 99.48 0.71 -11.03 15 19 H -0.26 -11.02 7.11 99.48 0.71 -10.31 15 20 H 0.17 2.18 8.06 -2.91 -0.02 2.16 15 21 H 0.18 1.34 8.06 -2.91 -0.02 1.31 15 22 H 0.21 1.76 8.06 -2.91 -0.02 1.74 15 23 H 0.14 2.77 8.12 -2.38 -0.02 2.75 15 24 H 0.09 2.40 7.93 -2.39 -0.02 2.38 15 25 H 0.02 0.93 8.14 -2.39 -0.02 0.91 15 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 15 27 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 15 28 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 15 29 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 Total: -1.00 -71.04 272.84 5.99 -65.05 By element: Atomic # 1 Polarization: -3.37 SS G_CDS: 1.14 Total: -2.23 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 5.15 Total: -5.69 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -0.79 Total: -82.49 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -1.54 Total: -20.66 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -71.04 5.99 -65.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385257717.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.883 kcal (2) G-P(sol) polarization free energy of solvation -71.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds