Wall clock time and date at job start Mon Mar 30 2020 03:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 C 1.50700 * 109.47313 * 65.00349 * 3 2 1 14 14 O 1.21250 * 119.99875 * 94.99493 * 13 3 2 15 15 C 1.47149 * 119.99855 * 275.00353 * 13 3 2 16 16 C 1.40230 * 120.96951 * 359.71448 * 15 13 3 17 17 N 1.32105 * 118.88886 * 179.69989 * 16 15 13 18 18 C 1.31892 * 120.99465 * 0.61070 * 17 16 15 19 19 N 1.31884 * 122.16507 * 359.66055 * 18 17 16 20 20 C 1.32099 * 120.99877 * 0.02562 * 19 18 17 21 21 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 23 23 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 24 24 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 25 25 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 27 27 H 1.08001 * 120.55203 * 359.97438 * 16 15 13 28 28 H 1.08003 * 118.91350 * 179.67702 * 18 17 16 29 29 H 1.08003 * 120.56073 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 6 1.6414 2.1163 1.2877 14 8 2.4158 2.1482 2.2201 15 6 0.3124 2.7352 1.4135 16 6 -0.5970 2.7151 0.3462 17 7 -1.7813 3.2780 0.5061 18 6 -2.1078 3.8622 1.6426 19 7 -1.2824 3.9096 2.6701 20 6 -0.0796 3.3675 2.6022 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.8295 -0.0694 -2.9455 27 1 -0.3350 2.2434 -0.5894 28 1 -3.0833 4.3165 1.7349 29 1 0.5908 3.4108 3.4478 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394068876.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:51 Heat of formation + Delta-G solvation = 4.655126 kcal Electronic energy + Delta-G solvation = -14704.819935 eV Core-core repulsion = 12207.272592 eV Total energy + Delta-G solvation = -2497.547342 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.92774 -38.46025 -34.78863 -33.53821 -32.36766 -31.21635 -27.99513 -25.39777 -24.40529 -23.41791 -21.32335 -19.03810 -17.67042 -17.28285 -16.28300 -15.61902 -14.94139 -14.77763 -14.14061 -13.68740 -13.52078 -13.16288 -12.79155 -12.46597 -11.97612 -11.40773 -11.34193 -10.97980 -10.79545 -10.69182 -10.32232 -10.13210 -9.93298 -9.32894 -9.18480 -9.07161 -8.68099 -8.40489 -6.13948 -4.19638 0.60844 1.19128 3.02819 3.27255 3.33741 3.38936 4.01934 4.16621 4.28222 4.34074 4.64674 4.82671 5.10783 5.18196 5.45386 5.87527 5.96209 6.01885 6.19352 6.38204 6.44989 6.64823 6.75186 6.98409 7.00562 7.38065 7.66374 7.87432 8.09713 8.10765 8.41308 8.85482 9.45903 10.92373 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.043883 B = 0.008347 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.905834 B = 3353.537786 C = 3648.297527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.111 4.111 3 C 0.013 3.987 4 H 0.053 0.947 5 C -0.510 4.510 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.891 5.891 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.407 3.593 14 O -0.453 6.453 15 C -0.258 4.258 16 C 0.194 3.806 17 N -0.530 5.530 18 C 0.299 3.701 19 N -0.533 5.533 20 C 0.187 3.813 21 H 0.043 0.957 22 H 0.034 0.966 23 H 0.053 0.947 24 H 0.109 0.891 25 H 0.040 0.960 26 H 0.263 0.737 27 H 0.187 0.813 28 H 0.195 0.805 29 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.131 2.875 3.494 9.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.149 4.149 3 C -0.006 4.006 4 H 0.071 0.929 5 C -0.548 4.548 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.198 1.198 13 C 0.283 3.717 14 O -0.327 6.327 15 C -0.263 4.263 16 C 0.028 3.972 17 N -0.244 5.244 18 C 0.012 3.988 19 N -0.247 5.247 20 C 0.021 3.979 21 H 0.062 0.938 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.127 0.873 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.204 0.796 28 H 0.212 0.788 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.615 3.232 3.911 9.997 hybrid contribution 1.622 -0.412 -0.243 1.691 sum -6.992 2.820 3.668 8.384 Atomic orbital electron populations 1.22256 0.99245 1.00498 0.99722 1.21537 0.91398 0.98025 1.03910 1.19194 0.98272 0.93393 0.89748 0.92947 1.21058 0.89687 1.38144 1.05892 0.91316 1.24928 0.98633 0.94874 0.95404 1.69836 1.35115 1.38339 1.09626 0.86464 0.85065 0.78686 0.77106 1.20538 1.21167 1.19764 1.23198 0.82361 0.74901 0.91209 1.90382 1.51723 1.49488 1.41115 1.22994 1.01152 1.04783 0.97401 1.24167 0.86752 0.87548 0.98691 1.68509 1.19259 1.11040 1.25593 1.25130 0.98800 0.90905 0.83933 1.68440 1.04546 1.19859 1.31809 1.23612 0.91465 0.86396 0.96392 0.93762 0.94723 0.92787 0.87259 0.94077 0.92700 0.79648 0.78848 0.80854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 8.25 37.16 0.31 -2.50 15 2 C -0.11 -2.40 5.23 -26.73 -0.14 -2.54 15 3 C 0.01 0.30 1.76 -92.92 -0.16 0.13 15 4 H 0.05 1.22 6.81 -51.93 -0.35 0.86 15 5 C -0.51 -13.58 8.34 -34.44 -0.29 -13.86 15 6 H 0.07 1.91 7.03 -52.49 -0.37 1.54 15 7 C 0.06 1.67 5.29 -17.82 -0.09 1.57 15 8 N -0.89 -23.68 11.28 55.43 0.63 -23.05 15 9 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 15 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 12 H -0.27 -6.35 7.11 56.52 0.40 -5.94 15 13 C 0.41 8.63 5.89 -30.69 -0.18 8.45 15 14 O -0.45 -10.59 15.90 5.58 0.09 -10.50 15 15 C -0.26 -4.55 4.92 -104.78 -0.52 -5.06 15 16 C 0.19 3.16 8.37 -16.69 -0.14 3.02 15 17 N -0.53 -8.03 10.42 -14.17 -0.15 -8.18 15 18 C 0.30 4.05 12.27 -91.99 -1.13 2.92 15 19 N -0.53 -7.97 10.42 -14.17 -0.15 -8.12 15 20 C 0.19 3.00 10.88 -16.69 -0.18 2.82 15 21 H 0.04 0.71 8.14 -51.93 -0.42 0.29 15 22 H 0.03 0.58 5.32 -51.93 -0.28 0.31 15 23 H 0.05 0.89 6.49 -51.93 -0.34 0.55 15 24 H 0.11 2.64 5.94 -51.93 -0.31 2.33 15 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 15 26 H 0.26 6.71 8.31 -40.82 -0.34 6.37 15 27 H 0.19 2.96 4.45 -52.49 -0.23 2.72 15 28 H 0.19 1.82 8.06 -52.48 -0.42 1.40 15 29 H 0.17 2.57 7.74 -52.48 -0.41 2.17 15 LS Contribution 246.51 15.07 3.71 3.71 Total: -1.00 -28.39 246.51 -6.10 -34.49 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -2.69 Total: 0.90 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.52 Total: -5.06 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.33 Total: -39.35 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.39 -6.10 -34.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394068876.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.143 kcal (2) G-P(sol) polarization free energy of solvation -28.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds