Wall clock time and date at job start Mon Mar 30 2020 03:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 C 1.50700 * 109.47313 * 65.00349 * 3 2 1 14 14 O 1.21250 * 119.99875 * 94.99493 * 13 3 2 15 15 C 1.47149 * 119.99855 * 275.00353 * 13 3 2 16 16 C 1.40230 * 120.96951 * 359.71448 * 15 13 3 17 17 N 1.32105 * 118.88886 * 179.69989 * 16 15 13 18 18 C 1.31892 * 120.99465 * 0.61070 * 17 16 15 19 19 N 1.31884 * 122.16507 * 359.66055 * 18 17 16 20 20 C 1.32099 * 120.99877 * 0.02562 * 19 18 17 21 21 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 23 23 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 24 24 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 25 25 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 27 27 H 1.08001 * 120.55203 * 359.97438 * 16 15 13 28 28 H 1.08003 * 118.91350 * 179.67702 * 18 17 16 29 29 H 1.08003 * 120.56073 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 6 1.6414 2.1163 1.2877 14 8 2.4158 2.1482 2.2201 15 6 0.3124 2.7352 1.4135 16 6 -0.5970 2.7151 0.3462 17 7 -1.7813 3.2780 0.5061 18 6 -2.1078 3.8622 1.6426 19 7 -1.2824 3.9096 2.6701 20 6 -0.0796 3.3675 2.6022 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.8295 -0.0694 -2.9455 27 1 -0.3350 2.2434 -0.5894 28 1 -3.0833 4.3165 1.7349 29 1 0.5908 3.4108 3.4478 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394068876.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:51 Heat of formation + Delta-G solvation = -12.101569 kcal Electronic energy + Delta-G solvation = -14705.546559 eV Core-core repulsion = 12207.272592 eV Total energy + Delta-G solvation = -2498.273967 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.21065 -40.09342 -36.52256 -34.85838 -34.01580 -32.75221 -29.74660 -26.90489 -25.67106 -25.13623 -22.88839 -20.68211 -19.01173 -18.66425 -17.97067 -17.28760 -16.63274 -16.34116 -15.74142 -15.14708 -14.79212 -14.66147 -14.39655 -14.09115 -13.57551 -13.22080 -12.85683 -12.68259 -12.58545 -12.13966 -12.03726 -11.77416 -11.64245 -11.01614 -10.67785 -10.54634 -10.41363 -10.17457 -8.15220 -6.27093 -0.68623 -0.05760 1.40874 1.42973 1.48650 1.53781 2.41500 2.75092 3.02580 3.06040 3.14705 3.25091 3.48922 3.79748 4.31989 4.44751 4.48065 4.54394 4.70681 4.81653 4.97621 5.19254 5.25354 5.29771 5.57769 5.71715 5.75846 5.95216 6.21947 6.69158 6.80126 6.92224 7.40399 8.89193 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.043883 B = 0.008347 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.905834 B = 3353.537786 C = 3648.297527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C 0.007 3.993 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.047 0.953 7 C 0.026 3.974 8 N -0.904 5.904 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.276 1.276 13 C 0.414 3.586 14 O -0.486 6.486 15 C -0.278 4.278 16 C 0.203 3.797 17 N -0.534 5.534 18 C 0.312 3.688 19 N -0.536 5.536 20 C 0.196 3.804 21 H 0.060 0.940 22 H 0.041 0.959 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.025 0.975 26 H 0.266 0.734 27 H 0.187 0.813 28 H 0.240 0.760 29 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.749 3.426 3.544 10.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C -0.012 4.012 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.065 0.935 7 C -0.174 4.174 8 N -0.543 5.543 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.363 6.363 15 C -0.283 4.283 16 C 0.037 3.963 17 N -0.248 5.248 18 C 0.027 3.973 19 N -0.249 5.249 20 C 0.030 3.970 21 H 0.080 0.920 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.203 0.797 28 H 0.256 0.744 29 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -10.256 3.785 3.950 11.624 hybrid contribution 2.045 -0.535 -0.254 2.129 sum -8.211 3.250 3.696 9.573 Atomic orbital electron populations 1.22121 0.95755 1.01972 1.00664 1.21351 0.94462 0.96570 1.01813 1.19176 0.96484 0.94553 0.90985 0.93196 1.21260 0.91762 1.38639 1.05688 0.93490 1.25521 1.02125 0.94585 0.95182 1.69913 1.36263 1.38353 1.09758 0.85666 0.80928 0.78366 0.77372 1.20307 1.20112 1.20150 1.23047 0.83667 0.74222 0.89842 1.90362 1.53153 1.51031 1.41720 1.22528 0.99662 1.07084 0.99037 1.24147 0.86912 0.87099 0.98171 1.68631 1.18395 1.11418 1.26357 1.26080 0.99789 0.88798 0.82668 1.68584 1.04099 1.19930 1.32329 1.23741 0.92012 0.85353 0.95889 0.92050 0.93986 0.91557 0.89718 0.95661 0.92474 0.79666 0.74401 0.80188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 8.25 71.98 0.59 -4.40 15 2 C -0.10 -4.56 5.23 30.59 0.16 -4.40 15 3 C 0.01 0.33 1.76 -12.29 -0.02 0.30 15 4 H 0.05 2.35 6.81 -2.38 -0.02 2.34 15 5 C -0.54 -29.31 8.34 25.60 0.21 -29.09 15 6 H 0.05 2.71 7.03 -2.91 -0.02 2.69 15 7 C 0.03 1.39 5.29 84.66 0.45 1.84 15 8 N -0.90 -48.43 11.28 21.45 0.24 -48.19 15 9 Si 0.95 43.09 29.54 68.60 2.03 45.12 15 10 H -0.28 -12.40 7.11 99.48 0.71 -11.70 15 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 15 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 15 13 C 0.41 17.75 5.89 28.03 0.16 17.91 15 14 O -0.49 -23.29 15.90 -2.94 -0.05 -23.34 15 15 C -0.28 -9.51 4.92 -19.97 -0.10 -9.61 15 16 C 0.20 6.22 8.37 85.14 0.71 6.94 15 17 N -0.53 -14.51 10.42 -198.75 -2.07 -16.59 15 18 C 0.31 7.23 12.27 180.83 2.22 9.45 15 19 N -0.54 -14.42 10.42 -198.75 -2.07 -16.49 15 20 C 0.20 5.95 10.88 85.14 0.93 6.88 15 21 H 0.06 1.85 8.14 -2.39 -0.02 1.83 15 22 H 0.04 1.35 5.32 -2.38 -0.01 1.34 15 23 H 0.07 2.07 6.49 -2.39 -0.02 2.05 15 24 H 0.08 4.15 5.94 -2.38 -0.01 4.14 15 25 H 0.02 1.14 8.14 -2.39 -0.02 1.12 15 26 H 0.27 13.55 8.31 -92.70 -0.77 12.78 15 27 H 0.19 5.65 4.45 -2.91 -0.01 5.63 15 28 H 0.24 3.21 8.06 -2.91 -0.02 3.19 15 29 H 0.18 5.15 7.74 -2.91 -0.02 5.13 15 Total: -1.00 -60.86 246.51 4.57 -56.29 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.17 Total: 7.38 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 5.32 Total: -4.18 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -3.90 Total: -81.27 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.05 Total: -23.34 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -60.86 4.57 -56.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394068876.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.184 kcal (2) G-P(sol) polarization free energy of solvation -60.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds