Wall clock time and date at job start Mon Mar 30 2020 02:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35597 * 117.00142 * 2 1 4 4 C 1.38688 * 120.17253 * 0.02562 * 3 2 1 5 5 C 1.38047 * 120.11359 * 179.70223 * 4 3 2 6 6 C 1.38633 * 120.45026 * 0.55348 * 5 4 3 7 7 C 1.50700 * 119.82664 * 179.72273 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.72185 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48501 * 109.47188 * 90.00793 * 12 10 8 14 14 H 1.48501 * 109.47085 * 210.00372 * 12 10 8 15 15 H 1.48498 * 109.47634 * 330.00608 * 12 10 8 16 16 C 1.37667 * 120.33978 * 359.44150 * 6 5 4 17 17 C 1.40022 * 119.88207 * 0.28013 * 16 6 5 18 18 C 1.46780 * 120.22137 * 179.97438 * 17 16 6 19 19 O 1.21297 * 120.00495 * 359.97438 * 18 17 16 20 20 H 1.09001 * 109.46651 * 59.99915 * 1 2 3 21 21 H 1.08994 * 109.46835 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47177 * 300.00082 * 1 2 3 23 23 H 1.08006 * 119.94363 * 359.97438 * 4 3 2 24 24 H 1.07999 * 119.77932 * 180.29101 * 5 4 3 25 25 H 1.09004 * 109.47210 * 149.72479 * 7 6 5 26 26 H 1.08994 * 109.47551 * 29.72131 * 7 6 5 27 27 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 28 28 H 1.08006 * 120.05773 * 180.25326 * 16 6 5 29 29 H 1.08002 * 119.99719 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2929 2.3736 0.0005 5 6 1.9209 3.6029 0.0067 6 6 3.3048 3.6849 0.0009 7 6 3.9756 5.0344 0.0015 8 6 4.1993 5.4847 -1.4192 9 1 3.8864 4.8568 -2.2403 10 6 4.7976 6.7013 -1.6706 11 7 5.1781 7.4661 -0.6707 12 14 5.0677 7.2629 -3.4316 13 1 3.8834 8.0305 -3.8935 14 1 6.2736 8.1271 -3.4960 15 1 5.2609 6.0777 -4.3051 16 6 4.0692 2.5400 0.0005 17 6 3.4470 1.2857 0.0000 18 6 4.2548 0.0602 -0.0011 19 8 5.4656 0.1319 -0.0020 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 0.2142 2.3193 0.0005 24 1 1.3301 4.5070 0.0119 25 1 4.9344 4.9633 0.5153 26 1 3.3406 5.7557 0.5156 27 1 5.5994 8.3218 -0.8476 28 1 5.1471 2.6093 0.0001 29 1 3.7710 -0.9054 -0.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396048336.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:55 Heat of formation + Delta-G solvation = -77.693198 kcal Electronic energy + Delta-G solvation = -14103.678149 eV Core-core repulsion = 11570.267164 eV Total energy + Delta-G solvation = -2533.410985 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.34112 -39.66308 -38.50704 -35.27301 -32.83676 -32.17229 -29.16144 -27.80674 -25.84664 -25.03065 -22.40960 -21.39972 -19.07672 -18.52226 -17.79224 -16.94638 -16.67440 -16.36374 -16.02892 -15.22247 -15.17023 -14.90932 -14.67695 -14.49314 -13.61015 -13.25127 -13.15220 -12.81851 -12.56624 -12.46740 -12.10789 -12.01825 -11.59029 -11.36390 -10.70884 -10.60147 -10.00287 -9.03306 -8.20764 -6.35161 -0.27932 0.50158 1.38118 1.40058 1.50830 1.55391 2.27256 2.38572 2.87975 3.09037 3.38558 3.85508 3.93988 4.31058 4.40326 4.45173 4.51129 4.59002 4.66961 4.85519 4.88833 5.14945 5.27346 5.31574 5.40457 5.71887 5.73469 5.94634 6.15431 6.37477 6.52391 6.77340 7.33603 8.87528 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.033003 B = 0.007149 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.198942 B = 3915.883979 C = 4296.529247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.317 6.317 3 C 0.171 3.829 4 C -0.209 4.209 5 C -0.049 4.049 6 C -0.115 4.115 7 C 0.060 3.940 8 C -0.531 4.531 9 H 0.054 0.946 10 C 0.005 3.995 11 N -0.929 5.929 12 Si 0.965 3.035 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.269 1.269 16 C -0.045 4.045 17 C -0.241 4.241 18 C 0.400 3.600 19 O -0.513 6.513 20 H 0.066 0.934 21 H 0.128 0.872 22 H 0.069 0.931 23 H 0.169 0.831 24 H 0.134 0.866 25 H -0.003 1.003 26 H 0.012 0.988 27 H 0.266 0.734 28 H 0.109 0.891 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.567 -14.016 0.903 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.230 6.230 3 C 0.124 3.876 4 C -0.228 4.228 5 C -0.067 4.067 6 C -0.115 4.115 7 C 0.023 3.977 8 C -0.569 4.569 9 H 0.072 0.928 10 C -0.194 4.194 11 N -0.569 5.569 12 Si 0.789 3.211 13 H -0.192 1.192 14 H -0.206 1.206 15 H -0.193 1.193 16 C -0.064 4.064 17 C -0.242 4.242 18 C 0.263 3.737 19 O -0.390 6.390 20 H 0.084 0.916 21 H 0.146 0.854 22 H 0.087 0.913 23 H 0.186 0.814 24 H 0.152 0.848 25 H 0.015 0.985 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.127 0.873 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.786 -14.030 0.948 18.348 hybrid contribution 0.301 1.111 -0.641 1.318 sum -11.486 -12.918 0.307 17.289 Atomic orbital electron populations 1.23489 0.75671 1.06185 1.02678 1.85932 1.24020 1.25372 1.87654 1.18992 0.90379 0.85307 0.92934 1.21459 1.01576 0.90735 1.08986 1.21269 0.93283 0.98519 0.93670 1.20270 0.94788 0.95860 1.00610 1.18050 0.94190 0.89170 0.96314 1.21411 1.39591 1.03385 0.92519 0.92780 1.25929 0.95003 0.96659 1.01784 1.70078 1.41674 1.12123 1.33039 0.85444 0.78055 0.78277 0.79284 1.19200 1.20612 1.19341 1.21073 0.99586 0.91157 0.94565 1.20344 0.92350 0.96194 1.15343 1.24267 0.87648 0.93822 0.67943 1.90505 1.19334 1.91069 1.38085 0.91559 0.85381 0.91282 0.81358 0.84796 0.98467 0.97009 0.92539 0.87272 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 15 2 O -0.32 -6.58 9.68 -89.07 -0.86 -7.44 15 3 C 0.17 4.76 6.71 22.91 0.15 4.92 15 4 C -0.21 -5.69 9.03 22.33 0.20 -5.48 15 5 C -0.05 -1.75 9.68 22.32 0.22 -1.53 15 6 C -0.12 -5.08 5.06 -19.91 -0.10 -5.18 15 7 C 0.06 3.23 5.09 29.10 0.15 3.38 15 8 C -0.53 -30.69 9.09 25.60 0.23 -30.45 15 9 H 0.05 3.07 7.74 -2.91 -0.02 3.05 15 10 C 0.00 0.26 5.46 84.66 0.46 0.72 15 11 N -0.93 -56.50 13.29 21.45 0.28 -56.21 15 12 Si 0.97 44.76 29.54 68.60 2.03 46.79 15 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 14 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 16 C -0.05 -1.92 9.23 22.57 0.21 -1.71 15 17 C -0.24 -8.22 5.88 -20.08 -0.12 -8.34 15 18 C 0.40 12.29 11.19 70.06 0.78 13.08 15 19 O -0.51 -19.98 17.17 -3.08 -0.05 -20.04 15 20 H 0.07 0.69 7.66 -2.39 -0.02 0.67 15 21 H 0.13 0.78 8.14 -2.39 -0.02 0.76 15 22 H 0.07 0.68 7.66 -2.39 -0.02 0.66 15 23 H 0.17 3.09 6.30 -2.91 -0.02 3.08 15 24 H 0.13 4.47 8.06 -2.91 -0.02 4.45 15 25 H 0.00 -0.18 8.08 -2.38 -0.02 -0.20 15 26 H 0.01 0.65 8.08 -2.39 -0.02 0.63 15 27 H 0.27 15.13 8.31 -92.70 -0.77 14.36 15 28 H 0.11 5.06 7.65 -2.91 -0.02 5.04 15 29 H 0.15 3.10 7.64 -2.91 -0.02 3.08 15 Total: -1.00 -71.04 262.54 5.84 -65.20 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: 1.15 Total: 1.04 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 3.30 Total: -29.34 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.28 Total: -56.21 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.91 Total: -27.48 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -71.04 5.84 -65.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396048336.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.495 kcal (2) G-P(sol) polarization free energy of solvation -71.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds