Wall clock time and date at job start Mon Mar 30 2020 02:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35917 * 116.99664 * 2 1 4 4 C 1.38893 * 119.96869 * 359.72247 * 3 2 1 5 5 C 1.38291 * 120.29138 * 180.27725 * 4 3 2 6 6 C 1.37939 * 120.23855 * 359.97438 * 5 4 3 7 7 C 1.39839 * 119.93216 * 0.02562 * 6 5 4 8 8 C 1.47178 * 120.14394 * 179.97438 * 7 6 5 9 9 O 1.21259 * 120.00147 * 5.15636 * 8 7 6 10 10 C 1.38379 * 119.96808 * 179.97438 * 3 2 1 11 11 C 1.50702 * 120.12177 * 359.70105 * 10 3 2 12 12 C 1.50700 * 109.47029 * 95.14926 * 11 10 3 13 13 H 1.08003 * 119.99943 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99815 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00388 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99726 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47347 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47041 * 120.00097 * 16 14 12 19 19 H 1.48501 * 109.46935 * 240.00057 * 16 14 12 20 20 H 1.09006 * 109.46774 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47655 * 299.99813 * 1 2 3 22 22 H 1.09001 * 109.47205 * 60.00409 * 1 2 3 23 23 H 1.08002 * 119.85424 * 0.27476 * 4 3 2 24 24 H 1.08000 * 119.88216 * 179.97438 * 5 4 3 25 25 H 1.07999 * 120.03305 * 179.97438 * 6 5 4 26 26 H 1.08004 * 120.00513 * 185.14671 * 8 7 6 27 27 H 1.08992 * 109.47287 * 215.15539 * 11 10 3 28 28 H 1.09002 * 109.46551 * 335.15788 * 11 10 3 29 29 H 0.96995 * 120.00402 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2888 2.3755 -0.0058 5 6 1.9096 3.6112 -0.0116 6 6 3.2863 3.6969 -0.0112 7 6 4.0581 2.5308 -0.0053 8 6 5.5273 2.6168 -0.0054 9 8 6.0714 3.6968 0.0839 10 6 3.4279 1.2828 0.0005 11 6 4.2507 0.0203 0.0079 12 6 4.6328 -0.3386 -1.4050 13 1 4.3122 0.2854 -2.2261 14 6 5.3916 -1.4635 -1.6493 15 7 5.7815 -2.2237 -0.6495 16 14 5.8657 -1.9080 -3.4007 17 1 5.3074 -0.8987 -4.3360 18 1 7.3456 -1.9297 -3.5225 19 1 5.3217 -3.2485 -3.7357 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 0.2104 2.3155 -0.0059 24 1 1.3144 4.5123 -0.0166 25 1 3.7677 4.6637 -0.0161 26 1 6.1210 1.7181 -0.0848 27 1 5.1526 0.1778 0.5994 28 1 3.6674 -0.7909 0.4437 29 1 6.3156 -3.0149 -0.8214 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396051626.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:39 Heat of formation + Delta-G solvation = -53.980059 kcal Electronic energy + Delta-G solvation = -14513.802478 eV Core-core repulsion = 11981.419772 eV Total energy + Delta-G solvation = -2532.382706 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.86145 -38.34670 -36.50058 -33.65956 -31.57234 -29.88360 -27.49424 -26.79398 -24.14819 -23.26721 -20.80592 -19.92037 -17.39666 -16.39649 -16.24323 -15.35531 -15.24997 -15.03154 -14.40540 -14.28217 -13.61040 -13.04904 -12.76676 -12.48120 -12.03858 -11.83931 -11.62922 -11.11658 -11.01037 -10.69269 -10.62206 -10.51785 -9.72745 -9.50824 -9.03342 -8.45152 -8.32278 -7.57300 -6.07787 -4.12050 1.16464 1.95367 3.01290 3.28441 3.36522 3.41159 3.74410 4.29617 4.46353 4.97378 5.12239 5.26376 5.29000 5.38430 5.42248 5.62889 5.70142 5.87079 5.94083 6.10305 6.48867 6.62713 6.77294 6.90776 7.10389 7.47674 7.63491 7.86452 7.91190 8.05452 8.24395 8.92540 9.51919 11.01767 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.011249 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.330658 B = 2488.604019 C = 3368.649896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.296 6.296 3 C 0.105 3.895 4 C -0.182 4.182 5 C -0.125 4.125 6 C -0.100 4.100 7 C -0.167 4.167 8 C 0.394 3.606 9 O -0.486 6.486 10 C -0.011 4.011 11 C 0.046 3.954 12 C -0.510 4.510 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.283 1.283 20 H 0.095 0.905 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.122 0.878 24 H 0.119 0.881 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.033 0.967 28 H 0.043 0.957 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.960 6.012 1.589 10.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.209 6.209 3 C 0.060 3.940 4 C -0.201 4.201 5 C -0.144 4.144 6 C -0.119 4.119 7 C -0.168 4.168 8 C 0.255 3.745 9 O -0.361 6.361 10 C -0.012 4.012 11 C 0.010 3.990 12 C -0.549 4.549 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.209 1.209 20 H 0.114 0.886 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.140 0.860 24 H 0.137 0.863 25 H 0.142 0.858 26 H 0.139 0.861 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.487 6.221 1.676 10.655 hybrid contribution -0.282 -0.295 -1.013 1.092 sum -8.769 5.926 0.663 10.604 Atomic orbital electron populations 1.22977 0.79911 1.03463 1.00433 1.86275 1.19799 1.26211 1.88614 1.18798 0.92088 0.84062 0.99093 1.21345 0.99532 0.92613 1.06574 1.20646 0.94381 0.96588 1.02742 1.21202 0.93478 0.97977 0.99194 1.20582 0.96699 0.92706 1.06780 1.24389 0.89038 0.92869 0.68179 1.90408 1.75148 1.33846 1.36696 1.20399 0.91037 0.96996 0.92758 1.18366 0.94011 0.88384 0.98248 1.21010 1.32734 1.09553 0.91560 0.92439 1.24967 0.95867 0.96031 0.97142 1.69952 1.36805 1.15495 1.30646 0.86508 0.78259 0.78439 0.84711 1.19676 1.20840 1.20908 0.88620 0.93399 0.93243 0.85977 0.86267 0.85758 0.86141 0.94882 0.93858 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 15 2 O -0.30 -5.69 9.45 -19.48 -0.18 -5.87 15 3 C 0.10 2.03 6.65 -39.29 -0.26 1.77 15 4 C -0.18 -2.90 9.04 -39.32 -0.36 -3.26 15 5 C -0.13 -1.93 10.02 -39.67 -0.40 -2.33 15 6 C -0.10 -1.74 9.59 -39.09 -0.38 -2.12 15 7 C -0.17 -3.32 5.87 -105.08 -0.62 -3.93 15 8 C 0.39 7.90 10.83 34.36 0.37 8.27 15 9 O -0.49 -10.23 17.17 5.58 0.10 -10.14 15 10 C -0.01 -0.23 5.12 -103.98 -0.53 -0.77 15 11 C 0.05 1.15 4.28 -29.03 -0.12 1.03 15 12 C -0.51 -13.73 9.03 -34.44 -0.31 -14.05 15 13 H 0.06 1.56 7.74 -52.48 -0.41 1.15 15 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15 15 N -0.89 -25.44 13.29 55.43 0.74 -24.70 15 16 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 15 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 20 H 0.10 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.05 0.53 7.66 -51.93 -0.40 0.13 15 22 H 0.05 0.58 7.65 -51.93 -0.40 0.18 15 23 H 0.12 1.56 6.28 -52.49 -0.33 1.23 15 24 H 0.12 1.44 8.06 -52.49 -0.42 1.01 15 25 H 0.12 2.01 7.65 -52.49 -0.40 1.61 15 26 H 0.12 2.44 6.51 -52.48 -0.34 2.10 15 27 H 0.03 0.83 6.70 -51.93 -0.35 0.48 15 28 H 0.04 1.16 7.38 -51.93 -0.38 0.78 15 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 LS Contribution 258.56 15.07 3.90 3.90 Total: -1.00 -30.34 258.56 -5.17 -35.51 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -2.99 Total: -2.34 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.71 Total: -12.43 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.74 Total: -24.70 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.09 Total: -16.01 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.34 -5.17 -35.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396051626.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.473 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds