Wall clock time and date at job start Mon Mar 30 2020 02:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35912 * 117.00053 * 2 1 4 4 C 1.38427 * 119.96868 * 359.97438 * 3 2 1 5 5 C 1.39768 * 119.76294 * 180.02562 * 4 3 2 6 6 C 1.47186 * 120.14372 * 179.97438 * 5 4 3 7 7 O 1.21250 * 119.99959 * 0.02562 * 6 5 4 8 8 C 1.39872 * 119.71064 * 359.97438 * 5 4 3 9 9 C 1.37890 * 119.93715 * 359.74810 * 8 5 4 10 10 C 1.38336 * 120.23585 * 0.52834 * 9 8 5 11 11 C 1.50699 * 119.85480 * 179.72226 * 10 9 8 12 12 C 1.50706 * 109.46817 * 264.72818 * 11 10 9 13 13 H 1.07995 * 120.00167 * 359.72198 * 12 11 10 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99350 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47353 * 89.99430 * 16 14 12 18 18 H 1.48494 * 109.47031 * 209.99977 * 16 14 12 19 19 H 1.48504 * 109.46680 * 329.99678 * 16 14 12 20 20 H 1.09001 * 109.46875 * 59.99913 * 1 2 3 21 21 H 1.08997 * 109.46897 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46746 * 299.99941 * 1 2 3 23 23 H 1.07999 * 120.12229 * 359.97438 * 4 3 2 24 24 H 1.08002 * 119.99672 * 179.97438 * 6 5 4 25 25 H 1.07998 * 120.03524 * 180.02562 * 8 5 4 26 26 H 1.07999 * 119.88417 * 180.25072 * 9 8 5 27 27 H 1.09000 * 109.47247 * 144.72881 * 11 10 9 28 28 H 1.09001 * 109.47358 * 24.72308 * 11 10 9 29 29 H 0.97005 * 119.99656 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2916 2.3715 -0.0005 5 6 1.9306 3.6146 -0.0011 6 6 1.1365 4.8538 -0.0022 7 8 -0.0747 4.7978 -0.0022 8 6 3.3280 3.6757 -0.0005 9 6 4.0677 2.5120 0.0058 10 6 3.4327 1.2829 0.0006 11 6 4.2496 0.0166 0.0012 12 6 4.4180 -0.4733 -1.4140 13 1 3.9737 0.0749 -2.2316 14 6 5.1348 -1.6242 -1.6644 15 7 5.2813 -2.0519 -2.8994 16 14 5.8967 -2.5766 -0.2496 17 1 4.9267 -3.5853 0.2473 18 1 7.1268 -3.2624 -0.7202 19 1 6.2422 -1.6389 0.8490 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 0.2130 2.3167 -0.0014 24 1 1.6328 5.8131 -0.0022 25 1 3.8272 4.6334 -0.0005 26 1 5.1466 2.5602 0.0103 27 1 3.7391 -0.7448 0.5909 28 1 5.2293 0.2163 0.4355 29 1 5.7853 -2.8618 -3.0756 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396061721.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:41 Heat of formation + Delta-G solvation = -73.480580 kcal Electronic energy + Delta-G solvation = -14318.430884 eV Core-core repulsion = 11785.202572 eV Total energy + Delta-G solvation = -2533.228312 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.27928 -39.80769 -38.12067 -35.41876 -33.47880 -31.13943 -29.92613 -28.33402 -25.93968 -23.43261 -22.99284 -21.62472 -18.98305 -18.91635 -17.42808 -16.75003 -16.61554 -16.49583 -16.07108 -15.67624 -15.21352 -14.89784 -14.60423 -14.30535 -13.77173 -13.55489 -13.19065 -12.66952 -12.53921 -12.15742 -12.01678 -11.89916 -11.77318 -11.55873 -10.77572 -10.73505 -9.75701 -9.03221 -8.28227 -6.32044 -0.26179 0.51629 1.37137 1.38412 1.50054 1.58027 2.36554 2.48481 2.91184 3.06604 3.36612 3.87743 4.07541 4.18021 4.27045 4.32297 4.38490 4.62392 4.64485 4.73056 4.92256 5.01711 5.13460 5.30450 5.40617 5.56536 5.71526 5.89888 6.24433 6.49626 6.56879 6.71758 7.30215 8.88661 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.037871 B = 0.007969 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.172839 B = 3512.679194 C = 3874.926669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.333 6.333 3 C 0.090 3.910 4 C -0.163 4.163 5 C -0.188 4.188 6 C 0.401 3.599 7 O -0.510 6.510 8 C -0.081 4.081 9 C -0.112 4.112 10 C -0.069 4.069 11 C 0.026 3.974 12 C -0.509 4.509 13 H 0.023 0.977 14 C 0.008 3.992 15 N -0.951 5.951 16 Si 0.950 3.050 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.242 1.242 20 H 0.053 0.947 21 H 0.114 0.886 22 H 0.067 0.933 23 H 0.135 0.865 24 H 0.166 0.834 25 H 0.181 0.819 26 H 0.146 0.854 27 H 0.022 0.978 28 H 0.040 0.960 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 11.602 9.244 15.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.045 3.955 4 C -0.182 4.182 5 C -0.190 4.190 6 C 0.263 3.737 7 O -0.386 6.386 8 C -0.099 4.099 9 C -0.130 4.130 10 C -0.070 4.070 11 C -0.011 4.011 12 C -0.547 4.547 13 H 0.042 0.958 14 C -0.188 4.188 15 N -0.592 5.592 16 Si 0.773 3.227 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.165 1.165 20 H 0.072 0.928 21 H 0.132 0.868 22 H 0.085 0.915 23 H 0.153 0.847 24 H 0.182 0.818 25 H 0.199 0.801 26 H 0.164 0.836 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.379 11.252 9.143 15.464 hybrid contribution 0.078 -1.093 -0.126 1.103 sum -5.301 10.159 9.017 14.581 Atomic orbital electron populations 1.23255 0.77397 1.05085 1.01632 1.86194 1.22602 1.27114 1.88817 1.19018 0.92224 0.84778 0.99516 1.21546 1.00324 0.91863 1.04494 1.21042 0.95713 0.95307 1.06899 1.24746 0.87801 0.93672 0.67527 1.90488 1.19533 1.91097 1.37457 1.21649 0.91737 0.99655 0.96862 1.21183 1.01294 0.90603 0.99900 1.20028 0.91207 0.97545 0.98185 1.18533 0.95064 0.91723 0.95776 1.21035 1.32597 1.09217 0.91831 0.95813 1.25934 0.96475 0.98023 0.98412 1.70059 1.43066 1.24438 1.21604 0.85669 0.78055 0.79174 0.79833 1.19739 1.20620 1.16473 0.92839 0.86784 0.91480 0.84705 0.81787 0.80146 0.83612 0.95930 0.94135 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.81 113.37 1.11 1.73 15 2 O -0.33 -13.91 9.61 -92.55 -0.89 -14.80 15 3 C 0.09 3.62 6.65 22.46 0.15 3.77 15 4 C -0.16 -5.52 8.58 22.68 0.19 -5.32 15 5 C -0.19 -5.14 5.87 -20.16 -0.12 -5.25 15 6 C 0.40 8.48 11.46 70.17 0.80 9.28 15 7 O -0.51 -14.99 17.16 -2.94 -0.05 -15.04 15 8 C -0.08 -1.99 9.79 22.58 0.22 -1.77 15 9 C -0.11 -3.68 9.65 22.21 0.21 -3.47 15 10 C -0.07 -2.90 5.09 -19.70 -0.10 -3.00 15 11 C 0.03 1.27 3.88 29.10 0.11 1.39 15 12 C -0.51 -30.06 9.65 25.60 0.25 -29.81 15 13 H 0.02 1.57 7.98 -2.91 -0.02 1.55 15 14 C 0.01 0.48 5.47 84.66 0.46 0.95 15 15 N -0.95 -60.38 13.96 21.45 0.30 -60.08 15 16 Si 0.95 44.57 27.47 68.60 1.88 46.45 15 17 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 19 H -0.24 -10.32 6.54 99.48 0.65 -9.67 15 20 H 0.05 1.51 7.66 -2.39 -0.02 1.50 15 21 H 0.11 2.85 8.14 -2.39 -0.02 2.83 15 22 H 0.07 1.68 7.66 -2.39 -0.02 1.66 15 23 H 0.14 4.29 5.88 -2.91 -0.02 4.27 15 24 H 0.17 1.53 8.06 -2.91 -0.02 1.51 15 25 H 0.18 2.45 8.06 -2.91 -0.02 2.43 15 26 H 0.15 4.28 8.06 -2.91 -0.02 4.26 15 27 H 0.02 1.12 7.11 -2.39 -0.02 1.10 15 28 H 0.04 1.84 7.10 -2.39 -0.02 1.83 15 29 H 0.27 15.74 8.31 -92.70 -0.77 14.97 15 Total: -1.00 -76.26 258.87 5.64 -70.62 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.09 Total: 4.36 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 3.30 Total: -31.51 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.30 Total: -60.08 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.94 Total: -29.84 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -76.26 5.64 -70.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396061721.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.861 kcal (2) G-P(sol) polarization free energy of solvation -76.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds