Wall clock time and date at job start Mon Mar 30 2020 02:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00104 * 2 1 4 4 H 1.48503 * 109.47368 * 239.99646 * 3 2 1 5 5 H 1.48496 * 109.47382 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47386 * 119.99923 * 3 2 1 7 7 C 1.38759 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99776 * 165.34546 * 7 2 1 9 9 N 1.36816 * 120.00026 * 345.34624 * 7 2 1 10 10 C 1.47276 * 121.11655 * 335.12493 * 9 7 2 11 11 C 1.53531 * 107.61377 * 222.12027 * 10 9 7 12 12 O 1.42969 * 108.76735 * 301.84410 * 11 10 9 13 13 C 1.35998 * 117.78567 * 49.06970 * 12 11 10 14 14 C 1.38661 * 119.59650 * 159.68254 * 13 12 11 15 15 C 1.38181 * 120.16563 * 179.97438 * 14 13 12 16 16 C 1.38966 * 120.25244 * 0.28293 * 15 14 13 17 17 N 1.39921 * 120.03011 * 180.02562 * 16 15 14 18 18 C 1.38736 * 119.93705 * 0.06960 * 16 15 14 19 19 C 1.38787 * 119.80956 * 359.96565 * 18 16 15 20 20 H 0.97002 * 120.00289 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.82747 * 341.64764 * 10 9 7 22 22 H 1.09001 * 109.82901 * 102.58673 * 10 9 7 23 23 H 1.09001 * 109.58884 * 61.62681 * 11 10 9 24 24 H 1.09001 * 109.58812 * 182.05977 * 11 10 9 25 25 H 1.08001 * 119.91788 * 0.21254 * 14 13 12 26 26 H 1.07997 * 119.87424 * 180.31191 * 15 14 13 27 27 H 0.97004 * 120.00006 * 0.02562 * 17 16 15 28 28 H 0.96992 * 120.00095 * 180.02562 * 17 16 15 29 29 H 1.08005 * 120.09772 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0100 -1.2017 0.0005 8 1 3.0636 -1.2170 -0.2361 9 7 1.3592 -2.3671 0.3008 10 6 0.1389 -2.3668 1.1254 11 6 0.2406 -3.5436 2.1061 12 8 0.3891 -4.7535 1.3590 13 6 1.3311 -4.7817 0.3786 14 6 1.8091 -6.0009 -0.0771 15 6 2.7659 -6.0432 -1.0732 16 6 3.2594 -4.8651 -1.6204 17 7 4.2278 -4.9133 -2.6292 18 6 2.7917 -3.6409 -1.1649 19 6 1.8312 -3.5984 -0.1640 20 1 -0.4851 0.8400 -0.0004 21 1 0.0664 -1.4301 1.6780 22 1 -0.7374 -2.4904 0.4890 23 1 1.1063 -3.4057 2.7540 24 1 -0.6655 -3.5957 2.7097 25 1 1.4299 -6.9199 0.3449 26 1 3.1312 -6.9956 -1.4281 27 1 4.5547 -5.7695 -2.9472 28 1 4.5722 -4.0907 -3.0107 29 1 3.1737 -2.7236 -1.5881 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527429019.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:47 Heat of formation + Delta-G solvation = -15.965684 kcal Electronic energy + Delta-G solvation = -14915.498379 eV Core-core repulsion = 12417.056851 eV Total energy + Delta-G solvation = -2498.441528 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.24971 -38.51513 -37.29258 -34.55077 -33.72531 -31.23894 -29.81428 -28.52619 -25.87754 -24.59027 -23.10875 -21.00007 -19.37396 -18.74118 -17.69266 -17.63893 -16.62794 -16.43021 -15.87945 -15.37483 -14.92427 -14.84909 -14.43900 -13.95418 -13.80401 -13.36732 -13.19547 -12.87180 -12.47240 -12.36173 -12.12568 -12.06550 -11.31818 -11.20981 -10.53801 -10.20050 -8.67014 -8.30014 -7.82242 -5.73490 0.87043 1.05030 1.39872 1.46579 1.50914 2.24298 2.69273 2.92806 3.03675 3.36163 3.40617 4.04561 4.25798 4.29096 4.45985 4.67004 4.73215 4.87479 5.02814 5.20296 5.27820 5.36172 5.47935 5.74774 5.78703 5.94762 6.14991 6.62403 6.77103 6.93184 7.27705 7.40319 7.76104 8.73582 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.028556 B = 0.011271 C = 0.008405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.309182 B = 2483.760440 C = 3330.564857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.020 4.020 3 Si 0.993 3.007 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.315 4.315 8 H 0.085 0.915 9 N -0.484 5.484 10 C 0.122 3.878 11 C 0.047 3.953 12 O -0.334 6.334 13 C -0.061 4.061 14 C -0.057 4.057 15 C -0.258 4.258 16 C 0.235 3.765 17 N -0.870 5.870 18 C -0.280 4.280 19 C 0.164 3.836 20 H 0.269 0.731 21 H 0.085 0.915 22 H 0.034 0.966 23 H 0.051 0.949 24 H 0.135 0.865 25 H 0.139 0.861 26 H 0.143 0.857 27 H 0.406 0.594 28 H 0.398 0.602 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.634 -6.411 -0.259 7.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.220 4.220 3 Si 0.816 3.184 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.443 4.443 8 H 0.103 0.897 9 N -0.178 5.178 10 C -0.003 4.003 11 C -0.029 4.029 12 O -0.250 6.250 13 C -0.110 4.110 14 C -0.077 4.077 15 C -0.283 4.283 16 C 0.130 3.870 17 N -0.411 5.411 18 C -0.309 4.309 19 C 0.051 3.949 20 H 0.079 0.921 21 H 0.103 0.897 22 H 0.052 0.948 23 H 0.070 0.930 24 H 0.152 0.848 25 H 0.156 0.844 26 H 0.161 0.839 27 H 0.236 0.764 28 H 0.227 0.773 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.216 -6.137 -0.071 7.446 hybrid contribution 0.372 1.441 -0.331 1.525 sum 4.589 -4.696 -0.403 6.578 Atomic orbital electron populations 1.70162 1.07097 1.28300 1.49427 1.26163 0.96351 1.02609 0.96874 0.84986 0.77666 0.76601 0.79104 1.19396 1.20499 1.19339 1.19604 0.93681 0.84083 1.46978 0.89709 1.42741 1.25320 1.02470 1.47250 1.21884 0.87002 0.98612 0.92784 1.23376 1.03054 0.83686 0.92834 1.85832 1.54972 1.37172 1.46977 1.18473 1.01460 0.93204 0.97909 1.20192 0.95689 0.94502 0.97305 1.20127 1.06121 0.96625 1.05405 1.17474 0.88628 0.92487 0.88423 1.42270 1.45585 1.11161 1.42123 1.19746 1.09183 0.96646 1.05344 1.18318 0.96719 0.85955 0.93881 0.92135 0.89708 0.94808 0.93039 0.84768 0.84352 0.83905 0.76376 0.77349 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.38 11.09 21.64 0.24 -50.14 15 2 C -0.02 -1.07 5.02 84.85 0.43 -0.64 15 3 Si 0.99 41.75 29.58 68.60 2.03 43.77 15 4 H -0.27 -10.99 7.11 99.48 0.71 -10.29 15 5 H -0.28 -11.49 7.11 99.48 0.71 -10.79 15 6 H -0.27 -10.92 7.11 99.48 0.71 -10.22 15 7 C -0.32 -17.33 8.81 84.04 0.74 -16.59 15 8 H 0.09 4.59 6.92 -2.91 -0.02 4.57 15 9 N -0.48 -26.00 3.03 -508.54 -1.54 -27.54 15 10 C 0.12 6.00 5.16 86.41 0.45 6.45 15 11 C 0.05 1.91 7.19 72.16 0.52 2.43 15 12 O -0.33 -14.78 10.33 -93.52 -0.97 -15.74 15 13 C -0.06 -2.81 6.52 22.66 0.15 -2.66 15 14 C -0.06 -2.18 9.96 22.36 0.22 -1.95 15 15 C -0.26 -8.90 9.88 22.43 0.22 -8.68 15 16 C 0.24 8.74 6.76 38.14 0.26 8.99 15 17 N -0.87 -23.61 9.10 -51.29 -0.47 -24.08 15 18 C -0.28 -12.85 9.09 22.52 0.20 -12.65 15 19 C 0.16 8.22 6.34 38.29 0.24 8.47 15 20 H 0.27 14.06 8.31 -92.71 -0.77 13.29 15 21 H 0.08 4.33 6.53 -2.39 -0.02 4.31 15 22 H 0.03 1.80 8.14 -2.39 -0.02 1.78 15 23 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.13 4.33 8.14 -2.39 -0.02 4.31 15 25 H 0.14 4.46 8.06 -2.91 -0.02 4.44 15 26 H 0.14 3.83 8.06 -2.91 -0.02 3.80 15 27 H 0.41 8.30 8.84 -92.71 -0.82 7.48 15 28 H 0.40 10.00 8.84 -92.71 -0.82 9.18 15 29 H 0.10 4.87 6.71 -2.91 -0.02 4.85 15 Total: -1.00 -64.07 245.88 2.28 -61.79 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -0.45 Total: 28.77 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 3.43 Total: -16.84 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -1.77 Total: -101.76 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.97 Total: -15.74 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -64.07 2.28 -61.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527429019.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.827 kcal (2) G-P(sol) polarization free energy of solvation -64.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds