Wall clock time and date at job start Mon Mar 30 2020 03:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47339 * 2 1 4 4 C 1.50701 * 109.47029 * 239.99875 * 2 1 3 5 5 H 1.08007 * 119.99542 * 245.35456 * 4 2 1 6 6 C 1.37870 * 120.00318 * 65.35105 * 4 2 1 7 7 N 1.31517 * 119.99968 * 5.14749 * 6 4 2 8 8 Si 1.86798 * 120.00112 * 185.13825 * 6 4 2 9 9 H 1.48502 * 109.47080 * 95.00377 * 8 6 4 10 10 H 1.48500 * 109.47270 * 214.99901 * 8 6 4 11 11 H 1.48498 * 109.47251 * 335.00317 * 8 6 4 12 12 C 1.50705 * 109.46980 * 119.99671 * 2 1 3 13 13 O 1.21713 * 119.99914 * 119.99939 * 12 2 1 14 14 N 1.32302 * 119.99923 * 299.99590 * 12 2 1 15 15 C 1.34666 * 119.99969 * 244.79931 * 14 12 2 16 16 C 1.41181 * 120.66869 * 354.86972 * 15 14 12 17 17 C 1.35356 * 119.26057 * 179.74380 * 16 15 14 18 18 N 1.35424 * 120.68642 * 0.56394 * 17 16 15 19 19 H 0.97001 * 119.28653 * 179.70974 * 18 17 16 20 20 C 1.35429 * 121.43585 * 359.68594 * 18 17 16 21 21 C 1.35347 * 120.68616 * 0.02562 * 20 18 17 22 22 H 1.09001 * 109.46936 * 294.98860 * 1 2 3 23 23 H 1.08992 * 109.46625 * 54.98313 * 1 2 3 24 24 H 1.08996 * 109.47014 * 174.98830 * 1 2 3 25 25 H 0.96998 * 120.00047 * 180.02562 * 7 6 4 26 26 H 1.08001 * 120.37297 * 359.97438 * 16 15 14 27 27 H 1.08002 * 119.65789 * 180.27154 * 17 16 15 28 28 H 1.08003 * 119.65646 * 180.02562 * 20 18 17 29 29 H 1.08006 * 120.36857 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5801 -1.6363 -1.1336 6 6 1.7927 -0.1787 -2.4797 7 7 1.2154 0.9975 -2.5940 8 14 2.2880 -1.1286 -4.0099 9 1 1.1251 -1.9064 -4.5078 10 1 2.7337 -0.1780 -5.0601 11 1 3.3989 -2.0566 -3.6785 12 6 2.0324 -0.7104 1.2306 13 8 2.7321 -1.7000 1.1189 14 7 1.7128 -0.2582 2.4321 15 6 2.6721 0.2128 3.2514 16 6 4.0337 0.1321 2.8871 17 6 4.9741 0.6193 3.7300 18 7 4.6210 1.1689 4.9162 19 1 5.3120 1.5079 5.5065 20 6 3.3240 1.2559 5.2961 21 6 2.3369 0.7919 4.4947 22 1 -0.3633 0.4341 0.9315 23 1 -0.3632 0.5897 -0.8416 24 1 -0.3633 -1.0237 -0.0898 25 1 1.0465 1.3715 -3.4729 26 1 4.3216 -0.3100 1.9447 27 1 6.0173 0.5648 3.4557 28 1 3.0747 1.7002 6.2484 29 1 1.3042 0.8643 4.8026 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596674545.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:47 Heat of formation + Delta-G solvation = 22.307541 kcal Electronic energy + Delta-G solvation = -14335.547924 eV Core-core repulsion = 11838.766048 eV Total energy + Delta-G solvation = -2496.781876 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.48275 -38.36952 -34.49671 -33.43710 -31.56025 -30.81663 -29.69279 -24.92229 -24.16849 -23.27446 -21.70280 -19.22862 -18.49842 -16.42838 -16.11705 -15.71638 -14.85509 -14.81810 -14.37447 -14.05655 -13.52585 -13.17255 -12.64516 -12.16518 -11.70322 -11.41510 -11.02611 -10.79116 -10.66968 -10.44676 -10.01006 -9.84849 -9.61998 -9.27634 -8.76121 -8.26515 -8.01500 -7.02752 -5.89046 -3.89565 1.23195 1.48239 2.93471 3.36144 3.41527 3.46922 3.54327 3.99471 4.54053 4.57164 4.72291 5.19945 5.33096 5.45047 5.47175 5.77709 6.07763 6.28461 6.62104 6.89819 6.93911 6.99352 7.18817 7.23476 7.33380 7.79298 7.91197 8.13789 8.48016 8.56308 9.17349 9.40923 9.73613 11.20739 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.046670 B = 0.007033 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.809159 B = 3980.317879 C = 4194.034469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.027 3.973 3 H 0.054 0.946 4 C -0.503 4.503 5 H 0.071 0.929 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.496 3.504 13 O -0.532 6.532 14 N -0.612 5.612 15 C 0.280 3.720 16 C -0.237 4.237 17 C 0.117 3.883 18 N -0.599 5.599 19 H 0.415 0.585 20 C 0.111 3.889 21 C -0.191 4.191 22 H 0.025 0.975 23 H 0.070 0.930 24 H 0.029 0.971 25 H 0.259 0.741 26 H 0.149 0.851 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.594 4.900 17.270 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.007 3.993 3 H 0.071 0.929 4 C -0.541 4.541 5 H 0.089 0.911 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.286 3.714 13 O -0.409 6.409 14 N -0.344 5.344 15 C 0.116 3.884 16 C -0.264 4.264 17 C -0.012 4.012 18 N -0.205 5.205 19 H 0.250 0.750 20 C -0.018 4.018 21 C -0.217 4.217 22 H 0.044 0.956 23 H 0.089 0.911 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.167 0.833 27 H 0.179 0.821 28 H 0.182 0.818 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.937 4.253 16.811 18.676 hybrid contribution 1.003 -0.325 -0.998 1.452 sum 7.940 3.927 15.813 18.125 Atomic orbital electron populations 1.21511 0.96534 0.99814 0.99679 1.18919 0.94496 0.96542 0.89390 0.92858 1.21222 1.34680 1.08625 0.89594 0.91082 1.24955 0.95427 0.94835 0.98943 1.69966 1.43900 1.16324 1.23437 0.86517 0.78853 0.79767 0.82544 1.20741 1.21386 1.19789 1.22503 0.75231 0.84507 0.89149 1.90586 1.33361 1.26991 1.89997 1.68533 1.33629 1.25610 1.06677 1.18707 0.88546 0.90339 0.90797 1.21918 0.93502 1.07730 1.03260 1.21632 1.00223 0.93945 0.85407 1.40851 1.07776 1.53807 1.18088 0.75020 1.21654 0.82944 0.97860 0.99342 1.20649 0.99902 1.06341 0.94815 0.95621 0.91134 0.95188 0.93170 0.83331 0.82092 0.81845 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.19 8.92 37.16 0.33 -2.85 15 2 C 0.03 0.79 2.58 -92.92 -0.24 0.55 15 3 H 0.05 1.61 8.12 -51.93 -0.42 1.19 15 4 C -0.50 -15.58 8.30 -34.44 -0.29 -15.87 15 5 H 0.07 2.30 6.77 -52.48 -0.36 1.94 15 6 C 0.06 1.76 5.29 -17.82 -0.09 1.66 15 7 N -0.90 -27.24 11.98 55.43 0.66 -26.58 15 8 Si 0.90 23.03 29.54 -169.99 -5.02 18.01 15 9 H -0.28 -7.14 7.11 56.52 0.40 -6.74 15 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 11 H -0.27 -7.02 7.11 56.52 0.40 -6.62 15 12 C 0.50 13.52 5.49 -12.07 -0.07 13.45 15 13 O -0.53 -15.60 14.91 5.18 0.08 -15.52 15 14 N -0.61 -14.49 10.15 -10.39 -0.11 -14.60 15 15 C 0.28 5.20 6.59 -84.39 -0.56 4.64 15 16 C -0.24 -3.94 9.05 -39.49 -0.36 -4.29 15 17 C 0.12 1.17 11.17 -16.99 -0.19 0.98 15 18 N -0.60 -3.98 5.23 -13.04 -0.07 -4.04 15 19 H 0.42 0.89 8.90 -40.82 -0.36 0.52 15 20 C 0.11 0.86 11.17 -16.99 -0.19 0.67 15 21 C -0.19 -2.47 10.00 -39.49 -0.39 -2.86 15 22 H 0.02 0.62 7.92 -51.93 -0.41 0.21 15 23 H 0.07 1.99 6.84 -51.93 -0.36 1.63 15 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 26 H 0.15 2.98 6.35 -52.49 -0.33 2.65 15 27 H 0.16 1.02 8.06 -52.49 -0.42 0.60 15 28 H 0.16 0.49 8.06 -52.48 -0.42 0.07 15 29 H 0.15 1.76 8.06 -52.48 -0.42 1.34 15 LS Contribution 257.21 15.07 3.88 3.88 Total: -1.00 -39.62 257.21 -5.69 -45.31 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -3.07 Total: -2.54 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.04 Total: -3.92 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.49 Total: -45.22 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.08 Total: -15.52 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -39.62 -5.69 -45.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596674545.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.615 kcal (2) G-P(sol) polarization free energy of solvation -39.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds