Wall clock time and date at job start Mon Mar 30 2020 03:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 O 1.21296 * 120.00078 * 240.00186 * 4 2 1 6 6 N 1.34777 * 120.00369 * 59.99719 * 4 2 1 7 7 C 1.37097 * 120.00219 * 180.02562 * 6 4 2 8 8 H 1.07998 * 120.00025 * 359.97438 * 7 6 4 9 9 C 1.38953 * 119.99977 * 180.02562 * 7 6 4 10 10 N 1.31410 * 119.99817 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99863 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47116 * 90.00324 * 11 9 7 13 13 H 1.48501 * 109.46746 * 210.00233 * 11 9 7 14 14 H 1.48500 * 109.47265 * 330.00100 * 11 9 7 15 15 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 16 16 C 1.38660 * 120.78553 * 59.72269 * 15 2 1 17 17 C 1.38207 * 119.15898 * 179.75242 * 16 15 2 18 18 N 1.31863 * 120.76347 * 0.53519 * 17 16 15 19 19 C 1.31875 * 121.72804 * 359.73633 * 18 17 16 20 20 C 1.38202 * 120.76134 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 24 24 H 0.96995 * 119.99691 * 359.97438 * 6 4 2 25 25 H 0.97000 * 120.00255 * 180.02562 * 10 9 7 26 26 H 1.08001 * 120.41912 * 0.02562 * 16 15 2 27 27 H 1.07990 * 119.61540 * 180.25173 * 17 16 15 28 28 H 1.08003 * 119.61757 * 179.97438 * 19 18 17 29 29 H 1.08006 * 120.41735 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7297 -1.6965 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1634 -0.8962 -3.5740 8 1 2.7844 -1.7743 -3.4750 9 6 1.8282 -0.4211 -4.8360 10 7 2.2663 -1.0405 -5.9090 11 14 0.7548 1.0980 -5.0073 12 1 1.6137 2.3085 -5.0523 13 1 -0.0369 1.0059 -6.2603 14 1 -0.1658 1.1872 -3.8455 15 6 2.0324 -0.7104 1.2304 16 6 1.7027 -2.0359 1.4689 17 6 2.1861 -2.6561 2.6055 18 7 2.9430 -1.9989 3.4623 19 6 3.2720 -0.7363 3.2706 20 6 2.8305 -0.0526 2.1537 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.1489 0.5386 -2.5435 25 1 2.0326 -0.7087 -6.7900 26 1 1.0798 -2.5782 0.7730 27 1 1.9373 -3.6894 2.7965 28 1 3.8937 -0.2309 3.9949 29 1 3.1037 0.9813 2.0020 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601027566.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:39 Heat of formation + Delta-G solvation = -6.241586 kcal Electronic energy + Delta-G solvation = -14399.632802 eV Core-core repulsion = 11901.612943 eV Total energy + Delta-G solvation = -2498.019859 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.13926 -38.42189 -34.53182 -33.90198 -31.78637 -30.97481 -30.10246 -25.42351 -24.35648 -23.17208 -21.73424 -19.29044 -18.42502 -16.57350 -16.21913 -15.49441 -15.35098 -14.89554 -14.14584 -13.84774 -13.47644 -13.34949 -13.02093 -12.84709 -12.27649 -11.99460 -11.81774 -11.44285 -11.27268 -10.92451 -10.63969 -10.03191 -9.64930 -9.36561 -9.23472 -8.87926 -8.52044 -8.25153 -6.37368 -3.89215 1.40808 1.53414 2.97084 3.01950 3.10715 3.63584 4.02935 4.05191 4.53914 4.67197 4.77048 5.00437 5.16832 5.30163 5.37658 5.45800 5.52994 5.62417 5.86540 5.88516 6.01133 6.06467 6.18973 6.33369 6.66988 6.95652 7.49805 8.07068 8.19239 8.51348 8.87472 9.35079 9.73369 10.75507 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.052739 B = 0.007132 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.792112 B = 3924.826700 C = 4151.533291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 H 0.094 0.906 4 C 0.454 3.546 5 O -0.569 6.569 6 N -0.584 5.584 7 C -0.307 4.307 8 H 0.120 0.880 9 C 0.043 3.957 10 N -0.878 5.878 11 Si 0.878 3.122 12 H -0.270 1.270 13 H -0.275 1.275 14 H -0.269 1.269 15 C -0.005 4.005 16 C -0.132 4.132 17 C 0.090 3.910 18 N -0.494 5.494 19 C 0.089 3.911 20 C -0.171 4.171 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.371 0.629 25 H 0.274 0.726 26 H 0.133 0.867 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 5.274 12.821 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.096 4.096 3 H 0.113 0.887 4 C 0.240 3.760 5 O -0.452 6.452 6 N -0.222 5.222 7 C -0.436 4.436 8 H 0.138 0.862 9 C -0.160 4.160 10 N -0.518 5.518 11 Si 0.704 3.296 12 H -0.195 1.195 13 H -0.201 1.201 14 H -0.194 1.194 15 C -0.014 4.014 16 C -0.152 4.152 17 C -0.066 4.066 18 N -0.203 5.203 19 C -0.068 4.068 20 C -0.191 4.191 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.204 0.796 25 H 0.085 0.915 26 H 0.151 0.849 27 H 0.169 0.831 28 H 0.168 0.832 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.916 4.151 13.377 14.543 hybrid contribution -1.065 1.677 -1.278 2.362 sum -4.981 5.828 12.098 14.323 Atomic orbital electron populations 1.21793 0.92679 1.03031 1.02213 1.20297 0.97204 0.99968 0.92115 0.88739 1.19481 0.85690 0.87294 0.83583 1.90592 1.40944 1.27684 1.85955 1.42184 1.46779 1.27467 1.05750 1.19448 1.30076 1.12030 0.82046 0.86243 1.25047 0.97798 0.98095 0.95095 1.69618 1.44421 1.39765 0.97982 0.86694 0.80833 0.83383 0.78649 1.19526 1.20052 1.19411 1.19793 0.93930 0.94083 0.93576 1.21955 1.00731 0.94824 0.97691 1.22650 0.93735 0.99686 0.90500 1.67592 1.12559 1.09128 1.31051 1.22582 0.97602 0.90586 0.96070 1.21990 0.99704 1.01435 0.95967 0.91716 0.92017 0.91702 0.79573 0.91511 0.84922 0.83093 0.83213 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.91 37.16 0.33 -1.56 15 2 C -0.07 -1.20 2.93 -92.92 -0.27 -1.48 15 3 H 0.09 1.33 7.95 -51.93 -0.41 0.91 15 4 C 0.45 10.08 6.99 -10.99 -0.08 10.00 15 5 O -0.57 -15.02 14.75 5.54 0.08 -14.94 15 6 N -0.58 -13.59 4.98 -10.96 -0.05 -13.65 15 7 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 15 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 15 9 C 0.04 1.16 5.50 -17.47 -0.10 1.07 15 10 N -0.88 -25.33 13.96 55.50 0.77 -24.56 15 11 Si 0.88 18.94 27.74 -169.99 -4.71 14.23 15 12 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 13 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 14 H -0.27 -5.22 6.52 56.52 0.37 -4.85 15 15 C -0.01 -0.09 4.40 -104.32 -0.46 -0.54 15 16 C -0.13 -2.16 8.09 -39.44 -0.32 -2.47 15 17 C 0.09 1.37 11.18 -17.55 -0.20 1.17 15 18 N -0.49 -7.70 10.36 -13.25 -0.14 -7.84 15 19 C 0.09 1.23 11.18 -17.55 -0.20 1.03 15 20 C -0.17 -2.42 9.76 -39.45 -0.39 -2.80 15 21 H 0.06 0.90 7.47 -51.93 -0.39 0.51 15 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.06 0.85 7.56 -51.93 -0.39 0.46 15 24 H 0.37 7.57 5.18 -40.82 -0.21 7.36 15 25 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 26 H 0.13 2.17 7.64 -52.49 -0.40 1.77 15 27 H 0.15 1.86 8.06 -52.49 -0.42 1.44 15 28 H 0.15 1.58 8.06 -52.48 -0.42 1.15 15 29 H 0.13 1.48 8.01 -52.48 -0.42 1.06 15 LS Contribution 255.39 15.07 3.85 3.85 Total: -1.00 -32.53 255.39 -5.07 -37.61 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -3.05 Total: 9.59 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -1.82 Total: -4.29 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.58 Total: -46.04 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.08 Total: -14.94 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.71 Total: 14.23 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.53 -5.07 -37.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601027566.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.365 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds