Wall clock time and date at job start Mon Mar 30 2020 02:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30528 * 1 3 3 Si 1.86804 * 120.00181 * 2 1 4 4 H 1.48501 * 109.47138 * 274.98497 * 3 2 1 5 5 H 1.48504 * 109.46932 * 34.98552 * 3 2 1 6 6 H 1.48496 * 109.47191 * 154.98378 * 3 2 1 7 7 C 1.40334 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00500 * 186.24641 * 7 2 1 9 9 C 1.41618 * 119.99616 * 6.24118 * 7 2 1 10 10 O 1.21899 * 120.00311 * 353.72923 * 9 7 2 11 11 C 1.47301 * 120.00176 * 173.72798 * 9 7 2 12 12 C 1.38329 * 126.29403 * 179.97438 * 11 9 7 13 13 N 1.34825 * 106.49606 * 179.97438 * 12 11 9 14 14 C 1.36510 * 107.82873 * 0.04733 * 13 12 11 15 15 N 1.29845 * 109.14473 * 359.96017 * 14 13 12 16 16 C 1.51147 * 123.77280 * 179.84335 * 14 13 12 17 17 C 1.53382 * 108.23931 * 344.08129 * 16 14 13 18 18 C 1.53136 * 109.26621 * 48.98602 * 17 16 14 19 19 C 1.46577 * 127.48464 * 180.11143 * 13 12 11 20 20 H 0.97003 * 120.00086 * 0.02562 * 1 2 3 21 21 H 1.08004 * 126.75285 * 359.91932 * 12 11 9 22 22 H 1.08999 * 109.71676 * 224.38193 * 16 14 13 23 23 H 1.08999 * 109.71514 * 103.77715 * 16 14 13 24 24 H 1.08996 * 109.50733 * 168.93138 * 17 16 14 25 25 H 1.09003 * 109.50001 * 289.04939 * 17 16 14 26 26 H 1.08996 * 109.46061 * 50.17334 * 18 17 16 27 27 H 1.08999 * 109.45954 * 170.14223 * 18 17 16 28 28 H 1.09001 * 109.57963 * 43.01094 * 19 13 12 29 29 H 1.09003 * 109.58565 * 282.59548 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.3815 2.1073 -1.3948 5 1 1.4934 2.6200 0.8028 6 1 3.5856 1.4120 0.5920 7 6 2.0070 -1.2153 0.0005 8 1 3.0822 -1.2181 0.1023 9 6 1.3052 -2.4382 -0.1322 10 8 0.0862 -2.4445 -0.1320 11 6 2.0482 -3.7025 -0.2706 12 6 1.4985 -4.9645 -0.4073 13 7 2.5326 -5.8243 -0.5026 14 6 3.6870 -5.0998 -0.4244 15 7 3.3924 -3.8427 -0.2871 16 6 5.0681 -5.7104 -0.4893 17 6 4.9376 -7.2197 -0.2494 18 6 3.8342 -7.7810 -1.1508 19 6 2.4705 -7.2799 -0.6634 20 1 -0.4850 0.8401 -0.0004 21 1 0.4475 -5.2125 -0.4319 22 1 5.7017 -5.2692 0.2801 23 1 5.5038 -5.5306 -1.4721 24 1 5.8831 -7.7086 -0.4839 25 1 4.6823 -7.4015 0.7946 26 1 3.9983 -7.4484 -2.1757 27 1 3.8549 -8.8702 -1.1148 28 1 1.7046 -7.5341 -1.3961 29 1 2.2316 -7.7434 0.2938 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606260858.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:30 Heat of formation + Delta-G solvation = 5.833042 kcal Electronic energy + Delta-G solvation = -14437.706475 eV Core-core repulsion = 11940.210211 eV Total energy + Delta-G solvation = -2497.496264 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.44322 -36.71388 -35.67625 -32.91727 -32.48527 -29.48174 -27.82805 -26.73515 -24.08227 -21.99626 -21.84172 -18.94886 -18.52422 -16.70881 -15.87391 -15.57808 -15.07036 -14.20982 -13.97049 -13.90934 -13.42557 -13.17280 -12.81511 -12.39579 -12.03043 -11.35228 -11.25010 -11.18120 -11.01685 -10.98890 -10.79825 -10.22094 -10.10191 -9.17907 -8.93585 -8.76503 -7.37610 -7.34777 -6.15937 -4.66988 2.61388 3.15829 3.24152 3.25612 3.32175 3.58681 4.17744 4.46529 4.58073 4.68167 4.72179 4.81228 5.19195 5.32143 5.42359 5.57966 5.63382 5.71317 5.78592 5.96710 6.02198 6.10762 6.44234 6.51183 6.93964 7.41597 7.67692 7.82103 8.43408 8.83410 9.00287 9.13172 10.49389 10.72175 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.052886 B = 0.007186 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.312711 B = 3895.403632 C = 4371.716225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.498 4.498 8 H 0.080 0.920 9 C 0.425 3.575 10 O -0.551 6.551 11 C -0.015 4.015 12 C -0.036 4.036 13 N -0.461 5.461 14 C 0.167 3.833 15 N -0.449 5.449 16 C -0.027 4.027 17 C -0.123 4.123 18 C -0.133 4.133 19 C 0.105 3.895 20 H 0.271 0.729 21 H 0.174 0.826 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.457 -13.613 -1.608 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.530 4.530 8 H 0.098 0.902 9 C 0.321 3.679 10 O -0.441 6.441 11 C -0.145 4.145 12 C -0.170 4.170 13 N -0.146 5.146 14 C -0.094 4.094 15 N -0.168 5.168 16 C -0.066 4.066 17 C -0.162 4.162 18 C -0.170 4.170 19 C -0.017 4.017 20 H 0.082 0.918 21 H 0.191 0.809 22 H 0.108 0.892 23 H 0.100 0.900 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.229 -13.066 -1.550 15.519 hybrid contribution -0.177 -0.014 -0.122 0.215 sum 8.052 -13.080 -1.672 15.451 Atomic orbital electron populations 1.69995 1.07560 1.27767 1.31821 1.26062 0.94578 1.01055 0.92777 0.86342 0.80686 0.80913 0.78858 1.19610 1.20373 1.18402 1.20895 0.95924 0.91142 1.45019 0.90209 1.17206 0.87389 0.84379 0.78933 1.90517 1.14676 1.87674 1.51200 1.23344 0.88849 0.96337 1.05928 1.22985 0.93228 0.90156 1.10606 1.45133 1.07203 1.06973 1.55301 1.23491 0.89117 0.87546 1.09233 1.70177 1.15382 1.14381 1.16876 1.20070 0.89598 0.93445 1.03447 1.21652 0.98945 0.95367 1.00189 1.21858 0.93475 1.01093 1.00624 1.21864 0.99235 0.78495 1.02155 0.91807 0.80854 0.89193 0.89971 0.90459 0.91335 0.90748 0.89820 0.89731 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -22.47 11.75 55.57 0.65 -21.82 15 2 C 0.08 2.23 5.49 -17.32 -0.10 2.14 15 3 Si 0.91 20.80 29.57 -169.99 -5.03 15.77 15 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 15 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 6 H -0.26 -5.85 7.11 56.52 0.40 -5.44 15 7 C -0.50 -15.18 9.12 -37.51 -0.34 -15.52 15 8 H 0.08 2.36 7.70 -52.49 -0.40 1.96 15 9 C 0.42 13.21 6.91 -34.61 -0.24 12.97 15 10 O -0.55 -18.52 15.46 5.01 0.08 -18.44 15 11 C -0.01 -0.39 6.93 -82.68 -0.57 -0.97 15 12 C -0.04 -0.79 11.43 -16.20 -0.19 -0.97 15 13 N -0.46 -8.29 3.12 -112.83 -0.35 -8.64 15 14 C 0.17 3.22 7.64 -154.38 -1.18 2.04 15 15 N -0.45 -11.01 10.95 -6.69 -0.07 -11.08 15 16 C -0.03 -0.35 6.33 -27.47 -0.17 -0.53 15 17 C -0.12 -1.19 5.95 -26.46 -0.16 -1.34 15 18 C -0.13 -1.21 5.93 -26.54 -0.16 -1.37 15 19 C 0.11 1.24 6.95 -3.88 -0.03 1.22 15 20 H 0.27 7.33 8.29 -40.82 -0.34 6.99 15 21 H 0.17 3.57 8.06 -52.48 -0.42 3.14 15 22 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 23 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 15 25 H 0.07 0.68 8.12 -51.93 -0.42 0.25 15 26 H 0.07 0.71 8.11 -51.93 -0.42 0.29 15 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 15 LS Contribution 254.00 15.07 3.83 3.83 Total: -1.00 -37.14 254.00 -7.36 -44.50 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -3.34 Total: -1.78 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.13 Total: -2.34 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.23 Total: -41.53 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.08 Total: -18.44 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -37.14 -7.36 -44.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606260858.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.332 kcal (2) G-P(sol) polarization free energy of solvation -37.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds