Wall clock time and date at job start Mon Mar 30 2020 02:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30528 * 1 3 3 Si 1.86804 * 120.00181 * 2 1 4 4 H 1.48501 * 109.47138 * 274.98497 * 3 2 1 5 5 H 1.48504 * 109.46932 * 34.98552 * 3 2 1 6 6 H 1.48496 * 109.47191 * 154.98378 * 3 2 1 7 7 C 1.40334 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00500 * 186.24641 * 7 2 1 9 9 C 1.41618 * 119.99616 * 6.24118 * 7 2 1 10 10 O 1.21899 * 120.00311 * 353.72923 * 9 7 2 11 11 C 1.47301 * 120.00176 * 173.72798 * 9 7 2 12 12 C 1.38329 * 126.29403 * 179.97438 * 11 9 7 13 13 N 1.34825 * 106.49606 * 179.97438 * 12 11 9 14 14 C 1.36510 * 107.82873 * 0.04733 * 13 12 11 15 15 N 1.29845 * 109.14473 * 359.96017 * 14 13 12 16 16 C 1.51147 * 123.77280 * 179.84335 * 14 13 12 17 17 C 1.53382 * 108.23931 * 344.08129 * 16 14 13 18 18 C 1.53136 * 109.26621 * 48.98602 * 17 16 14 19 19 C 1.46577 * 127.48464 * 180.11143 * 13 12 11 20 20 H 0.97003 * 120.00086 * 0.02562 * 1 2 3 21 21 H 1.08004 * 126.75285 * 359.91932 * 12 11 9 22 22 H 1.08999 * 109.71676 * 224.38193 * 16 14 13 23 23 H 1.08999 * 109.71514 * 103.77715 * 16 14 13 24 24 H 1.08996 * 109.50733 * 168.93138 * 17 16 14 25 25 H 1.09003 * 109.50001 * 289.04939 * 17 16 14 26 26 H 1.08996 * 109.46061 * 50.17334 * 18 17 16 27 27 H 1.08999 * 109.45954 * 170.14223 * 18 17 16 28 28 H 1.09001 * 109.57963 * 43.01094 * 19 13 12 29 29 H 1.09003 * 109.58565 * 282.59548 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.3815 2.1073 -1.3948 5 1 1.4934 2.6200 0.8028 6 1 3.5856 1.4120 0.5920 7 6 2.0070 -1.2153 0.0005 8 1 3.0822 -1.2181 0.1023 9 6 1.3052 -2.4382 -0.1322 10 8 0.0862 -2.4445 -0.1320 11 6 2.0482 -3.7025 -0.2706 12 6 1.4985 -4.9645 -0.4073 13 7 2.5326 -5.8243 -0.5026 14 6 3.6870 -5.0998 -0.4244 15 7 3.3924 -3.8427 -0.2871 16 6 5.0681 -5.7104 -0.4893 17 6 4.9376 -7.2197 -0.2494 18 6 3.8342 -7.7810 -1.1508 19 6 2.4705 -7.2799 -0.6634 20 1 -0.4850 0.8401 -0.0004 21 1 0.4475 -5.2125 -0.4319 22 1 5.7017 -5.2692 0.2801 23 1 5.5038 -5.5306 -1.4721 24 1 5.8831 -7.7086 -0.4839 25 1 4.6823 -7.4015 0.7946 26 1 3.9983 -7.4484 -2.1757 27 1 3.8549 -8.8702 -1.1148 28 1 1.7046 -7.5341 -1.3961 29 1 2.2316 -7.7434 0.2938 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606260858.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:29 Heat of formation + Delta-G solvation = -20.363812 kcal Electronic energy + Delta-G solvation = -14438.842455 eV Core-core repulsion = 11940.210211 eV Total energy + Delta-G solvation = -2498.632245 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.00620 -38.64776 -37.12357 -34.76712 -34.23717 -30.91492 -29.32124 -28.83830 -25.35909 -23.81541 -22.94090 -20.87580 -19.80919 -18.49381 -17.80113 -16.93319 -16.81387 -15.53632 -15.39921 -15.05632 -14.93982 -14.58745 -14.45163 -14.02328 -13.97263 -13.27645 -12.83283 -12.53355 -12.39901 -12.05225 -12.02385 -11.90181 -11.83398 -10.98097 -10.90556 -10.46056 -9.69170 -9.12177 -8.36033 -7.03258 0.86803 1.35931 1.36671 1.54965 1.78345 1.90542 2.24080 2.59216 3.44442 3.66075 3.73483 3.78110 3.84278 4.16216 4.35034 4.44735 4.54507 4.59238 4.71572 4.88355 4.99027 5.00720 5.11718 5.21507 5.31824 5.34697 5.82782 6.09377 6.33617 6.73117 6.79916 7.24146 8.26186 8.49574 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.052886 B = 0.007186 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.312711 B = 3895.403632 C = 4371.716225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.022 3.978 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.254 1.254 7 C -0.531 4.531 8 H 0.077 0.923 9 C 0.401 3.599 10 O -0.599 6.599 11 C -0.076 4.076 12 C -0.022 4.022 13 N -0.451 5.451 14 C 0.182 3.818 15 N -0.498 5.498 16 C -0.030 4.030 17 C -0.117 4.117 18 C -0.127 4.127 19 C 0.090 3.910 20 H 0.283 0.717 21 H 0.183 0.817 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.114 0.886 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.696 -15.319 -1.968 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.196 4.196 3 Si 0.817 3.183 4 H -0.182 1.182 5 H -0.183 1.183 6 H -0.177 1.177 7 C -0.562 4.562 8 H 0.095 0.905 9 C 0.301 3.699 10 O -0.493 6.493 11 C -0.204 4.204 12 C -0.160 4.160 13 N -0.134 5.134 14 C -0.082 4.082 15 N -0.217 5.217 16 C -0.069 4.069 17 C -0.154 4.154 18 C -0.164 4.164 19 C -0.030 4.030 20 H 0.094 0.906 21 H 0.200 0.800 22 H 0.112 0.888 23 H 0.116 0.884 24 H 0.132 0.868 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.143 0.857 28 H 0.119 0.881 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.482 -14.826 -1.914 18.258 hybrid contribution -0.843 0.347 -0.018 0.912 sum 9.639 -14.479 -1.932 17.501 Atomic orbital electron populations 1.70096 1.09760 1.29888 1.31839 1.27303 0.95606 1.05476 0.91225 0.85004 0.78952 0.74590 0.79745 1.18163 1.18299 1.17731 1.21230 0.95987 0.92586 1.46400 0.90477 1.17747 0.87302 0.86766 0.78043 1.90438 1.16244 1.88982 1.53591 1.22728 0.90347 0.96360 1.11009 1.22960 0.94465 0.89729 1.08842 1.45464 1.05501 1.09268 1.53127 1.24594 0.91671 0.86423 1.05479 1.70018 1.14451 1.17871 1.19396 1.20441 0.85818 0.96071 1.04547 1.21688 1.01082 0.92266 1.00405 1.21933 0.91055 1.03412 1.00027 1.22487 1.02124 0.74350 1.04079 0.90607 0.80006 0.88794 0.88432 0.86760 0.91332 0.90974 0.85679 0.88087 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -49.45 11.75 21.89 0.26 -49.19 15 2 C 0.02 1.32 5.49 85.40 0.47 1.79 15 3 Si 1.00 43.45 29.57 68.60 2.03 45.48 15 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 15 5 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 6 H -0.25 -10.66 7.11 99.48 0.71 -9.95 15 7 C -0.53 -34.08 9.12 23.61 0.22 -33.86 15 8 H 0.08 4.81 7.70 -2.91 -0.02 4.79 15 9 C 0.40 26.61 6.91 25.49 0.18 26.78 15 10 O -0.60 -42.91 15.46 -4.99 -0.08 -42.99 15 11 C -0.08 -4.26 6.93 41.04 0.28 -3.98 15 12 C -0.02 -1.01 11.43 84.26 0.96 -0.05 15 13 N -0.45 -15.67 3.12 -510.89 -1.59 -17.27 15 14 C 0.18 6.86 7.64 137.99 1.05 7.92 15 15 N -0.50 -25.20 10.95 -175.09 -1.92 -27.12 15 16 C -0.03 -0.71 6.33 30.12 0.19 -0.52 15 17 C -0.12 -1.68 5.95 30.77 0.18 -1.50 15 18 C -0.13 -1.68 5.93 30.72 0.18 -1.50 15 19 C 0.09 1.80 6.95 86.44 0.60 2.41 15 20 H 0.28 15.72 8.29 -92.71 -0.77 14.95 15 21 H 0.18 7.73 8.06 -2.91 -0.02 7.71 15 22 H 0.09 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.10 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.11 0.92 8.14 -2.39 -0.02 0.90 15 25 H 0.07 1.04 8.12 -2.39 -0.02 1.02 15 26 H 0.07 1.05 8.11 -2.39 -0.02 1.03 15 27 H 0.13 0.76 8.14 -2.39 -0.02 0.74 15 28 H 0.10 1.75 8.14 -2.39 -0.02 1.74 15 29 H 0.10 1.66 8.14 -2.39 -0.02 1.64 15 Total: -1.00 -88.50 254.00 4.17 -84.34 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.15 Total: 9.26 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 4.32 Total: -2.51 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -3.25 Total: -93.58 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -0.08 Total: -42.99 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -88.50 4.17 -84.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606260858.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.972 kcal (2) G-P(sol) polarization free energy of solvation -88.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds